Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

851472 .. 854802

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G007900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACTGCTATTGCCAATTCGCTGGCTTTGACTACAAATCCTCATGTCCAGCTCTCTTCTGGGTCTCCTCTGAAACCATCACAACAATATCTTGGGAGTGTGGCCCCTACAAACTTGTCACTCAATTCAAAGCATATTGGGAAAGCTCAGCTATCTACCTCCAAGAGGTCCTTCACAGTTCAGGCTGGATATAGTGATGGCGGTAGGTCAAACAGTTCAAGCATCTTCATTAGTGGCTTTGTTTTGGGAGGACTTATAGTTGGCACACTGGGTGCTGTATATGCACCTCAGATCAGTAAAGCACTGGCTGGAGCTGACCGGAAGGATCTAATGAGAAAACTGCCCAAGTTCATATATGATGAGGACAAAGCTTTGGAGAAAACACGAAAGGTACTGGCTGAGAAGATAGCGCAGCTGAACTCTGCTATAGATGATGTTTCTGGCCAGCTCCGATCGGAAGATGAACCAAATGAAGTACCCGTGAGCTCTGATGAAGTTGAAGCTGTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

17.99

Weight (kDa)

7.92

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	442
AdeI	CACNNNGTG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	393, 477
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	129, 219, 500
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	9 cut(s)	52, 146, 151, 314, 371, 415, 448, 486, 503
AluI	AGCT	9 cut(s)	52, 146, 151, 314, 371, 415, 448, 486, 503
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	2 cut(s)	102, 442
ApeKI	GCWGC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	103, 168
AvaII	GGWCC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	85, 191
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	1 cut(s)	413
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	103, 168
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	3 cut(s)	273, 309, 399
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	3 cut(s)	161, 302, 390
BseNI	ACTGG	3 cut(s)	273, 309, 399
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	104, 444
BsiEI	CGRYCG	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	104, 444
Bso31I	GGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	291, 325, 452
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	104, 444
BspCNI	CTCAG	3 cut(s)	160, 301, 391
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	273, 309, 399
BssMI	GATC	3 cut(s)	291, 325, 452
Bst4CI	ACNGT	2 cut(s)	178, 215
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	24, 446
BstDEI	CTNAG	3 cut(s)	147, 288, 399
BstENI	CCTNNNNNAGG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	3 cut(s)	294, 328, 455
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	291, 325, 452
BstMCI	CGRYCG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	104, 444
BtsIMutI	CAGTG	2 cut(s)	266, 302
Cac8I	GCNNGC	2 cut(s)	24, 446
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	103, 168
Csp6I	GTAC	2 cut(s)	392, 476
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	2 cut(s)	392, 476
DdeI	CTNAG	3 cut(s)	147, 288, 399
DpnI	GATC	3 cut(s)	293, 327, 454
DpnII	GATC	3 cut(s)	291, 325, 452
DraIII	CACNNNGTG	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	1 cut(s)	47
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	1 cut(s)	43
FauNDI	CATATG	1 cut(s)	509
Fnu4HI	GCNGC	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	413
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	1 cut(s)	413
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	104, 444
HapII	CCGG	1 cut(s)	319
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	369
HpaII	CCGG	1 cut(s)	319
Hpy188I	TCNGA	5 cut(s)	72, 291, 452, 457, 490
HpyAV	CCTTC	2 cut(s)	181, 316
HpyCH4III	ACNGT	2 cut(s)	178, 215
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	3 cut(s)	147, 288, 399
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	3 cut(s)	291, 325, 452
LmnI	GCTCC	2 cut(s)	311, 453
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	3 cut(s)	293, 327, 454
MboI	GATC	3 cut(s)	291, 325, 452
MboII	GAAGA	4 cut(s)	48, 217, 415, 470
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	488
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	2 cut(s)	16, 124
MluNI	TGGCCA	1 cut(s)	444
MnlI	CCTC	7 cut(s)	51, 78, 159, 169, 242, 297, 355
Mox20I	TGGCCA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeI	CATATG	1 cut(s)	509
NdeII	GATC	3 cut(s)	291, 325, 452
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	414
Ple19I	CGATCG	1 cut(s)	455
PpuMI	RGGWCCY	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	103, 168
PspPPI	RGGWCCY	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	325
PvuI	CGATCG	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	393, 477
RsaNI	GTAC	2 cut(s)	392, 476
SacI	GAGCTC	1 cut(s)	488
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	3 cut(s)	291, 325, 452
Sau96I	GGNCC	2 cut(s)	103, 168
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	2 cut(s)	16, 124
SsiI	CCGC	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	178, 215
TasI	AATT	2 cut(s)	16, 124
TscAI	CASTG	2 cut(s)	273, 309
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	5 cut(s)	217, 340, 477, 486, 507
TspRI	CASTG	2 cut(s)	273, 309
VpaK11BI	GGWCC	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.