Rh2AG110100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002670
Physical Location & Seq
Forward (+)
9796788 .. 9799899
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG110100.1

Sequence Viewer

Length: 432 bp
ATGTCTTTCCTGTCAGCTAATTCTGCTGTTTTGAGTATAACTTTTCATGGATACCAATTTAATCAACTTCAATTACTTCTCCCCGCTTCTTTTTCTTTTTGCATGTACAGTAGTGAAAAAAGTACTGCAGGCATCTTCGTTGGTGGATTTGTGTTGGGGGGCATAATTGTTGGAGCATTAGGCTGCGTGTATGCACCTCAGATAAGCAAGGCACTTGCAGTAGCTGGATCAGATAGAAAAGAGTTGATGAAGAAGCTGCCAAAATTCATATATGATGAAGAAAAAGCTCTTGAGAAAACCCGCAAAATACTGGCCGAGAAGATTTCACAGCTAAATTCTGCCATAGATGATGTTTCTGCTCAGCTGCATGCAGATGATGCCCCCCCAAATGGAGTTGCGGTATCTTCAGATGAAATTGAAGCTTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.26

Weight (kDa)

5.3

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 84, 301, 398
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 2 cut(s) 263, 334
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 2 cut(s) 107, 124
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 2 cut(s) 71, 419
AluBI AGCT 7 cut(s) 17, 224, 256, 287, 331, 364, 422
AluI AGCT 7 cut(s) 17, 224, 256, 287, 331, 364, 422
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 3 cut(s) 183, 256, 364
ApoI RAATTY 2 cut(s) 263, 334
BbvI GCAGC 3 cut(s) 170, 243, 351
BciVI GTATCC 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 3 cut(s) 184, 257, 365
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 3 cut(s) 185, 258, 366
BmcAI AGTACT 1 cut(s) 124
BmsI GCATC 2 cut(s) 141, 367
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 212, 374
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 3 cut(s) 170, 243, 351
BshFI GGCC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 389
BsnI GGCC 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 1 cut(s) 227
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 3 cut(s) 84, 301, 398
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 211, 373
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 315
BssMI GATC 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 130, 369
BstDEI CTNAG 2 cut(s) 198, 360
BstKTI GATC 1 cut(s) 230
BstMBI GATC 1 cut(s) 227
BstMWI GCNNNNNNNGC 2 cut(s) 23, 377
BstNSI RCATGY 2 cut(s) 106, 371
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 170, 243, 351
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 130, 369
CaiI CAGNNNCTG 1 cut(s) 224
Csp6I GTAC 2 cut(s) 106, 123
CviAII CATG 3 cut(s) 47, 103, 368
CviJI RGCY 9 cut(s) 17, 183, 224, 256, 287, 314, 331, 364, 422
CviKI_1 RGCY 9 cut(s) 17, 183, 224, 256, 287, 314, 331, 364, 422
CviQI GTAC 2 cut(s) 106, 123
DdeI CTNAG 2 cut(s) 198, 360
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 390
FaeI CATG 3 cut(s) 50, 106, 371
FatI CATG 3 cut(s) 46, 102, 367
FauI CCCGC 2 cut(s) 91, 308
FauNDI CATATG 1 cut(s) 428
Fnu4HI GCNGC 3 cut(s) 184, 257, 365
Fsp4HI GCNGC 3 cut(s) 184, 257, 365
GluI GCNGC 3 cut(s) 184, 257, 365
HaeIII GGCC 1 cut(s) 314
Hin1II CATG 3 cut(s) 50, 106, 371
HindIII AAGCTT 1 cut(s) 420
Hpy188I TCNGA 3 cut(s) 201, 232, 409
Hpy188III TCNNGA 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 6 cut(s) 102, 128, 194, 218, 367, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 377
HpyF3I CTNAG 2 cut(s) 198, 360
Hsp92II CATG 3 cut(s) 50, 106, 371
Kzo9I GATC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 23, 114, 210, 296
Lsp1109I GCAGC 3 cut(s) 170, 243, 351
LweI GCATC 2 cut(s) 141, 367
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MboII GAAGA 5 cut(s) 127, 262, 290, 331, 396
MluCI AATT 7 cut(s) 19, 56, 71, 165, 263, 334, 414
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 1 cut(s) 207
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 23, 377
NdeI CATATG 1 cut(s) 428
NdeII GATC 1 cut(s) 227
NlaIII CATG 3 cut(s) 50, 106, 371
NmeAIII GCCGAG 1 cut(s) 340
NspI RCATGY 2 cut(s) 106, 371
PaeI GCATGC 1 cut(s) 371
PkrI GCNGC 3 cut(s) 185, 258, 366
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 107, 124
RsaNI GTAC 2 cut(s) 106, 123
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 3 cut(s) 184, 257, 365
Sau3AI GATC 1 cut(s) 227
ScaI AGTACT 1 cut(s) 124
SetI ASST 8 cut(s) 19, 199, 226, 258, 289, 333, 366, 424
SfaNI GCATC 2 cut(s) 141, 367
SfcI CTRYAG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 371
Sse9I AATT 7 cut(s) 19, 56, 71, 165, 263, 334, 414
SsiI CCGC 3 cut(s) 84, 301, 398
TaaI ACNGT 1 cut(s) 110
TasI AATT 7 cut(s) 19, 56, 71, 165, 263, 334, 414
TatI WGTACW 2 cut(s) 105, 122
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseI GCWGC 3 cut(s) 183, 256, 364
TspDTI ATGAA 5 cut(s) 35, 256, 263, 291, 426
XapI RAATTY 2 cut(s) 263, 334
XceI RCATGY 2 cut(s) 106, 371
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.