Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003545.1

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Reverse (-)

22481 .. 26464

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003545.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgtctgctatttcgaattcgctggctctcactacaaatgcttctggatcttctctgaagcaatcccaacaatgtcttgggtttatggcccctacaaacttgtcactcaattcaaaccgtaaagttcaactttcgagctccaagaggtctttcgcggttcgagcctcatacagtgatggcaggaggtcaaacagtggaagcatctttatcagtggctttgttttgggaggacttatagttggcacactgggttgtgtatatgctcctcagatcagtaaaacacttgctggagctgaccgaaaggaactaatgagaaagcttcccaatttcttgtatgatgaagaaaaagaagtggagaaaacacgaaaagtactggctgagaagattgcacagctgaactctgctattgatggtgtctctggtcagctccgaaccaaagaggacccagatgaagtacctgtgagtgcagatgatgttgaagctaccatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.45

Weight (kDa)

8.93

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	372, 456
AgsI	TTSAA	3 cut(s)	114, 128, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	6 cut(s)	138, 293, 319, 394, 427, 482
AluI	AGCT	6 cut(s)	138, 293, 319, 394, 427, 482
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	88, 442
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BccI	CCATC	2 cut(s)	170, 404
BcoDI	GTCTC	1 cut(s)	421
BmcAI	AGTACT	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	88, 442
BmiI	GGNNCC	2 cut(s)	90, 444
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	252, 378
BseMII	CTCAG	2 cut(s)	281, 369
BseNI	ACTGG	2 cut(s)	252, 378
BseRI	GAGGAG	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	47, 270
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	280, 370
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	90, 444
BspPI	GGATC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	252, 378
BssMI	GATC	2 cut(s)	47, 270
Bst4CI	ACNGT	3 cut(s)	119, 173, 194
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	267, 378
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	50, 273
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	2 cut(s)	47, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	89
BtsIMutI	CAGTG	4 cut(s)	178, 199, 217, 245
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	88, 442
Csp6I	GTAC	2 cut(s)	371, 455
CviQI	GTAC	2 cut(s)	371, 455
DdeI	CTNAG	2 cut(s)	267, 378
DpnI	GATC	2 cut(s)	49, 272
DpnII	GATC	2 cut(s)	47, 270
Ecl136II	GAGCTC	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	140
FaiI	YATR	8 cut(s)	86, 169, 236, 259, 261, 336, 488, 490
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FauNDI	CATATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	57, 270, 431
Hpy188III	TCNNGA	1 cut(s)	45
HpyCH4III	ACNGT	3 cut(s)	119, 173, 194
HpyCH4V	TGCA	2 cut(s)	389, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	267, 378
Kzo9I	GATC	2 cut(s)	47, 270
LmnI	GCTCC	4 cut(s)	143, 268, 290, 432
LpnPI	CCDG	9 cut(s)	8, 30, 166, 233, 273, 359, 405, 459, 471
LweI	GCATC	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	2 cut(s)	49, 272
MboI	GATC	2 cut(s)	47, 270
MboII	GAAGA	3 cut(s)	42, 353, 394
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	3 cut(s)	16, 109, 325
MnlI	CCTC	6 cut(s)	138, 175, 177, 221, 276, 433
MspA1I	CMGCKG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	488
NdeII	GATC	2 cut(s)	47, 270
NlaIV	GGNNCC	2 cut(s)	90, 444
NmuCI	GTSAC	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	90, 444
PspPI	GGNCC	2 cut(s)	88, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	372, 456
RsaNI	GTAC	2 cut(s)	371, 455
SacI	GAGCTC	1 cut(s)	140
Sau3AI	GATC	2 cut(s)	47, 270
Sau96I	GGNCC	2 cut(s)	88, 442
ScaI	AGTACT	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	9 cut(s)	140, 149, 188, 295, 321, 396, 429, 460, 484
SfaNI	GCATC	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	442
Sse9I	AATT	3 cut(s)	16, 109, 325
SsiI	CCGC	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	140
TaaI	ACNGT	3 cut(s)	119, 173, 194
TaqI	TCGA	3 cut(s)	14, 134, 160
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	3 cut(s)	16, 109, 325
TatI	WGTACW	1 cut(s)	370
TscAI	CASTG	4 cut(s)	178, 199, 217, 252
TseFI	GTSAC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	354, 465
TspRI	CASTG	4 cut(s)	178, 199, 217, 252
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.