Rh7CG316900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002670
Physical Location & Seq
Reverse (-)
33821601 .. 33825624
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG316900.1

Sequence Viewer

Length: 492 bp
ATGTCTGCTATTTCGAATTCGCTGGCTCTCACTACAAATCCTTCTGGATCTTCTCTGAAGCAATCCCAACAACGTCTTGGGTTTATGGCCCCTACAAACTTGTCACTCAATTCAAACCGTAAAGTTCAACTTTCGAGCTCCAAGAGGTCTTTCGCGGTTCGAGCCTCATACAGTGATGGTGGGAGGTCAAACAGTGGAAGCATCTTTATCAGTGGCTTTGTTTTGGGAGGACTTATAGTTGGCACACTGGGTTGTGTATATGCTCCTCAGATCAGTAAAACACTTGCTGGAGCTGACCGAAAGGAACTAATGAGAAAGCTTCCCAATTTCTTGTATGATGAAGAAAAAGAAGTGGAGAAAACACGAAAAGTACTGGCTGAGAAGATTGCACAGCTGAACTCTGCTATTGATGGTGTCTCTGGTCAGCTCCGAACCAAAGAGGAGCCAGATGAAGTACCTGTGAGTGCAGATGATGTTGAAGCTACCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.44

Weight (kDa)

9.07

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 2 cut(s) 372, 456
AgsI TTSAA 3 cut(s) 114, 128, 479
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 6 cut(s) 138, 293, 319, 394, 427, 482
AluI AGCT 6 cut(s) 138, 293, 319, 394, 427, 482
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 14
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 2 cut(s) 170, 404
BcoDI GTCTC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 90, 444
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 252, 378
BseMII CTCAG 2 cut(s) 281, 369
BseNI ACTGG 2 cut(s) 252, 378
BseRI GAGGAG 2 cut(s) 255, 455
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 421
BsnI GGCC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 47, 270
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 280, 370
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 90, 444
BspPI GGATC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 14
BsrI ACTGG 2 cut(s) 252, 378
BssMI GATC 2 cut(s) 47, 270
Bst4CI ACNGT 3 cut(s) 119, 173, 194
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 267, 378
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 2 cut(s) 50, 273
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 2 cut(s) 47, 270
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstUI CGCG 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 1 cut(s) 89
BtsIMutI CAGTG 4 cut(s) 178, 199, 217, 245
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 371, 455
CviQI GTAC 2 cut(s) 371, 455
DdeI CTNAG 2 cut(s) 267, 378
DpnI GATC 2 cut(s) 49, 272
DpnII GATC 2 cut(s) 47, 270
Ecl136II GAGCTC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 140
FaiI YATR 8 cut(s) 86, 169, 236, 259, 261, 336, 488, 490
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FauNDI CATATG 1 cut(s) 488
FriOI GRGCYC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 317
Hpy188I TCNGA 3 cut(s) 57, 270, 431
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 3 cut(s) 119, 173, 194
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 389, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 267, 378
HpySE526I ACGT 1 cut(s) 73
Kzo9I GATC 2 cut(s) 47, 270
LmnI GCTCC 5 cut(s) 143, 268, 290, 432, 442
LpnPI CCDG 8 cut(s) 8, 30, 233, 273, 359, 405, 459, 471
LweI GCATC 1 cut(s) 210
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 102
MalI GATC 2 cut(s) 49, 272
MboI GATC 2 cut(s) 47, 270
MboII GAAGA 3 cut(s) 42, 353, 394
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 3 cut(s) 16, 109, 325
MnlI CCTC 6 cut(s) 138, 175, 177, 221, 276, 433
MspA1I CMGCKG 1 cut(s) 394
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeI CATATG 1 cut(s) 488
NdeII GATC 2 cut(s) 47, 270
NlaIV GGNNCC 2 cut(s) 90, 444
NmuCI GTSAC 1 cut(s) 102
NspV TTCGAA 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 90, 444
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 2 cut(s) 372, 456
RsaNI GTAC 2 cut(s) 371, 455
SacI GAGCTC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 47, 270
Sau96I GGNCC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 372
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 14
Sse9I AATT 3 cut(s) 16, 109, 325
SsiI CCGC 1 cut(s) 155
SstI GAGCTC 1 cut(s) 140
TaaI ACNGT 3 cut(s) 119, 173, 194
TaiI ACGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 14, 134, 160
TaqII GACCGA 1 cut(s) 312
TasI AATT 3 cut(s) 16, 109, 325
TatI WGTACW 1 cut(s) 370
TscAI CASTG 4 cut(s) 178, 199, 217, 252
TseFI GTSAC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 354, 465
TspRI CASTG 4 cut(s) 178, 199, 217, 252
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.