Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Reverse (-)

17254515 .. 17258588

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTGCTATTTCCAATTCGCTGACTTCTCCCCACCTATCTTCTGGATCTTCTCTGAAGCAATCCCAACAATGTCTCGGGCTTACAAACTTGTCACTCAATTCAAACCGTGCCGGTAAAGTTCAACTTTCAAGCTCCAAGAGGTCCTTCGCTGTTCAAGCCTCATATAGTGATGGTGGAAGATCAAACAGTGGAAGCATCTTTATCAGTGGCTTTGTTTTGGGAGGACTTATAGTTGGCACTCTGGGTTGTGTATATGCTCCTCAGATCAGTAAGACACTCGCTGGAGCTGACCGAAAGGAATTAATGAGAAAGCTTCCCAATTTCTTATATGATGAAGAGAAAGAAGTGGAGAAAACACGAAAAATACTGGCTGAGAAGATTGCGCAGCTGAACTCAGCTATTGATGGTGTCTCTGGTCAGCTCCAAACCAAAGAGGACCCTGATGAAGTACATGTGAACGGAGATGAAGTTGAAGCTGCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.17

Weight (kDa)

6.73

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	387
AclWI	GGATC	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	5 cut(s)	105, 125, 132, 158, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	7 cut(s)	135, 290, 316, 391, 401, 424, 479
AluI	AGCT	7 cut(s)	135, 290, 316, 391, 401, 424, 479
Alw26I	GTCTC	2 cut(s)	80, 418
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	5, 388, 479
AseI	ATTAAT	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	144, 439
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	144, 439
BbvI	GCAGC	2 cut(s)	400, 466
BccI	CCATC	2 cut(s)	167, 401
BcoDI	GTCTC	2 cut(s)	80, 418
BisI	GCNGC	3 cut(s)	6, 389, 480
BlsI	GCNGC	3 cut(s)	7, 390, 481
Bme18I	GGWCC	2 cut(s)	144, 439
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	144, 439
BmiI	GGNNCC	1 cut(s)	441
BmsI	GCATC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	375
BseMII	CTCAG	3 cut(s)	278, 366, 411
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	400, 466
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	80, 418
BsoBI	CYCGRG	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	47, 182, 267
BspCNI	CTCAG	3 cut(s)	277, 367, 410
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	3 cut(s)	47, 182, 267
Bst4CI	ACNGT	2 cut(s)	110, 191
Bst6I	CTCTTC	1 cut(s)	333
BstDEI	CTNAG	3 cut(s)	264, 375, 397
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	50, 185, 270
BstMAI	GTCTC	2 cut(s)	80, 418
BstMBI	GATC	3 cut(s)	47, 182, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	458
BstV1I	GCAGC	2 cut(s)	400, 466
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	196, 214
CfoI	GCGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	144, 439
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	3 cut(s)	264, 375, 397
DpnI	GATC	3 cut(s)	49, 184, 269
DpnII	GATC	3 cut(s)	47, 182, 267
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	144, 439
Eco57I	CTGAAG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	77
EcoO109I	RGGNCCY	2 cut(s)	144, 439
FaeI	CATG	1 cut(s)	458
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 131, 163
FatI	CATG	1 cut(s)	454
FauNDI	CATATG	1 cut(s)	485
Fnu4HI	GCNGC	3 cut(s)	6, 389, 480
Fsp4HI	GCNGC	3 cut(s)	6, 389, 480
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	3 cut(s)	6, 389, 480
GsuI	CTGGAG	1 cut(s)	306
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	314
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	57, 267
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	110, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	264, 375, 397
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	47, 182, 267
LmnI	GCTCC	4 cut(s)	140, 265, 287, 429
LpnPI	CCDG	7 cut(s)	30, 127, 230, 270, 356, 402, 456
Lsp1109I	GCAGC	2 cut(s)	400, 466
LweI	GCATC	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	3 cut(s)	49, 184, 269
MboI	GATC	3 cut(s)	47, 182, 267
MboII	GAAGA	5 cut(s)	33, 42, 192, 350, 391
MflI	RGATCY	1 cut(s)	47
MluCI	AATT	4 cut(s)	16, 100, 302, 322
MnlI	CCTC	5 cut(s)	135, 172, 218, 273, 430
MseI	TTAA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeI	CATATG	1 cut(s)	485
NdeII	GATC	3 cut(s)	47, 182, 267
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	93
NsbI	TGCGCA	1 cut(s)	387
NspI	RCATGY	1 cut(s)	458
PciI	ACATGT	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	7, 390, 481
PpuMI	RGGWCCY	2 cut(s)	144, 439
PscI	ACATGT	1 cut(s)	454
PshBI	ATTAAT	1 cut(s)	305
Psp5II	RGGWCCY	2 cut(s)	144, 439
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	144, 439
PspPPI	RGGWCCY	2 cut(s)	144, 439
PsuI	RGATCY	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	3 cut(s)	6, 389, 480
Sau3AI	GATC	3 cut(s)	47, 182, 267
Sau96I	GGNCC	2 cut(s)	144, 439
SetI	ASST	9 cut(s)	39, 137, 146, 292, 318, 393, 403, 426, 481
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	2 cut(s)	144, 439
Sse9I	AATT	4 cut(s)	16, 100, 302, 322
TaaI	ACNGT	2 cut(s)	110, 191
TaqII	GACCGA	1 cut(s)	309
TasI	AATT	4 cut(s)	16, 100, 302, 322
TatI	WGTACW	1 cut(s)	451
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	2 cut(s)	196, 214
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	3 cut(s)	5, 388, 479
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	3 cut(s)	351, 462, 483
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	196, 214
VpaK11BI	GGWCC	2 cut(s)	144, 439
VspI	ATTAAT	1 cut(s)	305
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.