Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

16125743 .. 16127298

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G42960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGTCTCTTTCTTCTACCTCTCTCTCTCTCCCCAAGAATTCTCACCAACTCCATCCTTCATCTGGTTTTTCTCTGAATCCAAATGCTCGTTGTGTCAGTGTTTCATTTGGACTGAATCACTCCAACAAACTTCATATTTCTGCTCCTAGAACCAAAAGGATCCTAACCATTCAATCTGCATACAGAGATGATGATGGTTCAGGCAGCACAGGCCTATTCGTCGGAGGGTTTATTTTGGGCGGACTTATAGTCGGTGCCCTCGGATGTGTATATGCACCACAGATCAGCAAGGCTATAGCTGGAGCAGACCGAAAGGATCTCATGAGGAAGTTGCCTAAATTCATATATGACGAGGAAAAAGCTTTGGAGAAAACACGTAAGGTACTAGCTGAGAAAATTGCTCAGCTTAACTCTGCTATCGACGATGTCTCCTCTCAGCTCAAATCAGAAGATACTCCGAATGGTGCAGCTCTAAGCACCGATGAAATCGAGGCTACAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

17.83

Weight (kDa)

8.55

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	3 cut(s)	157, 170, 327
AcsI	RAATTY	2 cut(s)	40, 341
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	176
AhdI	GACNNNNNGTC	1 cut(s)	251
AluBI	AGCT	6 cut(s)	302, 365, 392, 409, 442, 473
AluI	AGCT	6 cut(s)	302, 365, 392, 409, 442, 473
Alw26I	GTCTC	2 cut(s)	12, 436
AlwI	GGATC	3 cut(s)	157, 170, 327
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	207, 470
ApoI	RAATTY	2 cut(s)	40, 341
AsuHPI	GGTGA	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	219, 482
BccI	CCATC	2 cut(s)	63, 191
BcoDI	GTCTC	2 cut(s)	12, 436
BfaI	CTAG	2 cut(s)	150, 389
BfmI	CTRYAG	2 cut(s)	297, 498
BisI	GCNGC	2 cut(s)	208, 471
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	2 cut(s)	209, 472
BmeRI	GACNNNNNGTC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	164, 259
BpmI	CTGGAG	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	55, 272
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	3 cut(s)	384, 419, 452
BseRI	GAGGAG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	219, 482
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	12, 436
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	162, 285, 319
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	3 cut(s)	385, 418, 451
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	164, 259
BspPI	GGATC	3 cut(s)	157, 170, 327
BspT107I	GGYRCC	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	162, 285, 319
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	380
BstDEI	CTNAG	4 cut(s)	393, 405, 438, 476
BstF5I	GGATG	2 cut(s)	55, 272
BstKTI	GATC	3 cut(s)	165, 288, 322
BstMAI	GTCTC	2 cut(s)	12, 436
BstMBI	GATC	3 cut(s)	162, 285, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSFI	CTRYAG	2 cut(s)	297, 498
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	219, 482
BstX2I	RGATCY	2 cut(s)	162, 319
BstYI	RGATCY	2 cut(s)	162, 319
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	55, 272
BtsIMutI	CAGTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	4 cut(s)	393, 405, 438, 476
DpnI	GATC	3 cut(s)	164, 287, 321
DpnII	GATC	3 cut(s)	162, 285, 319
DriI	GACNNNNNGTC	1 cut(s)	251
Eam1105I	GACNNNNNGTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	328
FatI	CATG	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	208, 471
FokI	GGATG	2 cut(s)	42, 279
Fsp4HI	GCNGC	2 cut(s)	208, 471
FspBI	CTAG	2 cut(s)	150, 389
GluI	GCNGC	2 cut(s)	208, 471
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	216
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	79, 118
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	5 cut(s)	78, 227, 266, 451, 462
Hpy188III	TCNNGA	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	227, 428
HpyAV	CCTTC	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	182, 278, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	4 cut(s)	393, 405, 438, 476
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	162, 285, 319
LmnI	GCTCC	2 cut(s)	151, 305
LpnPI	CCDG	4 cut(s)	51, 189, 198, 288
Lsp1109I	GCAGC	2 cut(s)	219, 482
MaeI	CTAG	2 cut(s)	150, 389
MaeII	ACGT	1 cut(s)	379
MalI	GATC	3 cut(s)	164, 287, 321
MboI	GATC	3 cut(s)	162, 285, 319
MboII	GAAGA	2 cut(s)	6, 464
MflI	RGATCY	2 cut(s)	162, 319
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	40, 341, 399
MmeI	TCCRAC	2 cut(s)	150, 205
MnlI	CCTC	7 cut(s)	31, 221, 272, 321, 349, 445, 487
MseI	TTAA	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	3 cut(s)	162, 285, 319
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	164, 259
PagI	TCATGA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	79, 118
PflFI	GACNNNGTC	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	209, 472
Ppu21I	YACGTR	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	164, 259
PsuI	RGATCY	2 cut(s)	162, 319
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	208, 471
Sau3AI	GATC	3 cut(s)	162, 285, 319
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	9 cut(s)	23, 304, 367, 382, 387, 394, 411, 444, 475
SfcI	CTRYAG	2 cut(s)	297, 498
Sse9I	AATT	3 cut(s)	40, 341, 399
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	150, 389
StuI	AGGCCT	1 cut(s)	216
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	423, 492
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	3 cut(s)	40, 341, 399
TfiI	GAWTC	2 cut(s)	79, 118
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	2 cut(s)	207, 470
TspDTI	ATGAA	5 cut(s)	51, 96, 125, 334, 501
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	428
XapI	RAATTY	2 cut(s)	40, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	2 cut(s)	150, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.