FvH4_1g10160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002670
Physical Location & Seq
Forward (+)
5522318 .. 5525329
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10160.t1

Sequence Viewer

Length: 471 bp
ATGAGTGCTGTTTCGAGCTCCTTCGTTTCAGTTCAGAATCACAAGACCCACTTCTTGACTGGTTCCTCTACAAAGCCAGTGAACCACTGTATTGTGAATGTTACGCCCAGCAAGCTTACATCAAACAAAAGGACACTTGTTGTGCGAGCAGGTAGTGGAAAAAGTACTGCTGGCATCTTCGTTGGTGGATTTGTGTTGGGAGGCATAATTGTTGGAGCATTAGGCTGCGTGTATGCACCTCAGATAAGCAAGGCACTTGCGGTAGCCGGAGCTGATAGAAAAGATTTGATGAGGAAGCTGCCAAAATTCATATATGATGAAGAGAAAGCTCTAGAGAAAACTCGCAAAATCTTGGCTGAGAAGATTGCACAGCTAAACTCTGCCATAGATGATGTTTCTGCCCAGCTACATGCTGATGATGCCCCAAATGGAGTTGCAGTATCTTCAGATGAAGTTGAAGCTTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.35

Weight (kDa)

9.14

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AciI CCGC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 458
AluBI AGCT 8 cut(s) 18, 115, 272, 298, 329, 373, 406, 461
AluI AGCT 8 cut(s) 18, 115, 272, 298, 329, 373, 406, 461
Alw21I GWGCWC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 225, 298
ApoI RAATTY 1 cut(s) 305
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 212, 285
BfaI CTAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 226, 299
BlsI GCNGC 2 cut(s) 227, 300
BmcAI AGTACT 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 64
BmsI GCATC 2 cut(s) 183, 409
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bse1I ACTGG 2 cut(s) 64, 77
BseMII CTCAG 2 cut(s) 254, 348
BseNI ACTGG 2 cut(s) 64, 77
BseXI GCAGC 2 cut(s) 212, 285
BseYI CCCAGC 2 cut(s) 107, 402
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 20
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 253, 349
BspLI GGNNCC 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 140
BsrI ACTGG 2 cut(s) 64, 77
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 113, 147, 172
BstDEI CTNAG 2 cut(s) 240, 357
BstMWI GCNNNNNNNGC 2 cut(s) 112, 419
BstNSI RCATGY 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 212, 285
BtsIMutI CAGTG 2 cut(s) 84, 85
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 113, 147, 172
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 410
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 240, 357
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 1 cut(s) 413
FaiI YATR 9 cut(s) 206, 234, 311, 313, 315, 386, 411, 467, 469
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 1 cut(s) 409
FauNDI CATATG 1 cut(s) 467
Fnu4HI GCNGC 2 cut(s) 226, 299
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 226, 299
FspBI CTAG 1 cut(s) 332
GluI GCNGC 2 cut(s) 226, 299
GsaI CCCAGC 2 cut(s) 111, 406
HapII CCGG 1 cut(s) 267
Hin1II CATG 1 cut(s) 413
HindIII AAGCTT 2 cut(s) 113, 459
HinfI GANTC 1 cut(s) 37
HpaII CCGG 1 cut(s) 267
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 36, 243, 448
Hpy188III TCNNGA 2 cut(s) 55, 332
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 236, 368, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 419
HpyF3I CTNAG 2 cut(s) 240, 357
Hsp92II CATG 1 cut(s) 413
LmnI GCTCC 3 cut(s) 23, 215, 269
LpnPI CCDG 7 cut(s) 45, 90, 121, 135, 156, 280, 416
Lsp1109I GCAGC 2 cut(s) 212, 285
LweI GCATC 2 cut(s) 183, 409
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 4 cut(s) 169, 332, 373, 435
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 207, 305
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 76, 194, 249, 285
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 112, 419
NdeI CATATG 1 cut(s) 467
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 1 cut(s) 64
NspI RCATGY 1 cut(s) 413
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 227, 300
Psp124BI GAGCTC 1 cut(s) 20
PspFI CCCAGC 2 cut(s) 107, 402
PspN4I GGNNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 20
SatI GCNGC 2 cut(s) 226, 299
ScaI AGTACT 1 cut(s) 166
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 2 cut(s) 183, 409
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 2 cut(s) 207, 305
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 1 cut(s) 20
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 14
TasI AATT 2 cut(s) 207, 305
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 2 cut(s) 84, 92
TseI GCWGC 2 cut(s) 225, 298
TspDTI ATGAA 3 cut(s) 298, 333, 465
TspRI CASTG 2 cut(s) 84, 92
XapI RAATTY 1 cut(s) 305
XbaI TCTAGA 1 cut(s) 331
XceI RCATGY 1 cut(s) 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.