Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Reverse (-)

33830494 .. 33834954

Gene Structure 4461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTGCTATTTCGAATTCGCTGGCTCTCACTACAAATCCTTCTGGATCTTCTCTGAAGCAATCCCAACAATGTCTTGGGTTTATGGCCCCTACAAACTTGTCACTCAATTCAAACCGTGCCGGTAATGTTCAACTTTCGAGCTCCAATAGGTCTTTCGCGGTTCGAGCCTCATACAGTGATGGTGGGAGGTCAAACAGTGGAAGCATCTTTATCAGTGGCTTTGTTTTGGGAGGACTTATAGTTGGCACACTGGGTTGTGTATATGCTCCTCAGATCAGTAAAACACTTGCTGGAGCTGACCGAAAGGAACTAATGAGAAAGCTTCCCAATTTCTTGTATGATGAAGAAAAAGAAGTGGAGAAAACACGAAAAGTACTGGCTGAGAAGATTGCACAGCTGAACTCTGCTATTGATGGTGTCTCTGGTCAGCTCCGAACCAAAGAGGAGCCAGATGAAGTACCTGTGAGTGCAGATGATGTTGAAGCTACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.49

Weight (kDa)

6.31

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	161
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	378, 462
AgsI	TTSAA	3 cut(s)	114, 134, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	6 cut(s)	144, 299, 325, 400, 433, 488
AluI	AGCT	6 cut(s)	144, 299, 325, 400, 433, 488
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BccI	CCATC	2 cut(s)	176, 410
BcoDI	GTCTC	1 cut(s)	427
BmcAI	AGTACT	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	90, 450
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	258, 384
BseMII	CTCAG	2 cut(s)	287, 375
BseNI	ACTGG	2 cut(s)	258, 384
BseRI	GAGGAG	2 cut(s)	261, 461
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	47, 276
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	286, 376
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	90, 450
BspPI	GGATC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	258, 384
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	2 cut(s)	47, 276
Bst4CI	ACNGT	3 cut(s)	119, 179, 200
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	273, 384
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	50, 279
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	2 cut(s)	47, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstUI	CGCG	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	89
BtsIMutI	CAGTG	4 cut(s)	184, 205, 223, 251
Cac8I	GCNNGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	377, 461
CviQI	GTAC	2 cut(s)	377, 461
DdeI	CTNAG	2 cut(s)	273, 384
DpnI	GATC	2 cut(s)	49, 278
DpnII	GATC	2 cut(s)	47, 276
Ecl136II	GAGCTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	146
FaiI	YATR	8 cut(s)	86, 175, 242, 265, 267, 342, 494, 496
FauNDI	CATATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	323
HpaII	CCGG	1 cut(s)	123
Hpy188I	TCNGA	3 cut(s)	57, 276, 437
Hpy188III	TCNNGA	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	3 cut(s)	119, 179, 200
HpyCH4V	TGCA	2 cut(s)	395, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	273, 384
Kzo9I	GATC	2 cut(s)	47, 276
LmnI	GCTCC	5 cut(s)	149, 274, 296, 438, 448
LpnPI	CCDG	9 cut(s)	8, 30, 136, 239, 279, 365, 411, 465, 477
LweI	GCATC	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	2 cut(s)	49, 278
MboI	GATC	2 cut(s)	47, 276
MboII	GAAGA	3 cut(s)	42, 359, 400
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	3 cut(s)	16, 109, 331
MnlI	CCTC	5 cut(s)	181, 183, 227, 282, 439
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	2 cut(s)	47, 276
NlaIV	GGNNCC	2 cut(s)	90, 450
NmuCI	GTSAC	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	90, 450
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	378, 462
RsaNI	GTAC	2 cut(s)	377, 461
SacI	GAGCTC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	47, 276
Sau96I	GGNCC	1 cut(s)	88
ScaI	AGTACT	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	9 cut(s)	146, 155, 194, 301, 327, 402, 435, 466, 490
SfaNI	GCATC	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	14
Sse9I	AATT	3 cut(s)	16, 109, 331
SsiI	CCGC	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	119, 179, 200
TaqI	TCGA	3 cut(s)	14, 140, 166
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	16, 109, 331
TatI	WGTACW	1 cut(s)	376
TscAI	CASTG	4 cut(s)	184, 205, 223, 258
TseFI	GTSAC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	360, 471
TspRI	CASTG	4 cut(s)	184, 205, 223, 258
XapI	RAATTY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.