Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

9227628 .. 9230606

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1113600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGTGCTCTTCCGAGTTCCTTCGTTTCAGTTCCGAATCACAAAACCCACTTCTTAACTGGTTCTTCAAAGCCAACCTACCATTGTCTTTTGAACGTTAGTCCCAGTAATACAAATGCCGCATTTCAGGACAAAGCAAAGCTCACTTCACACAGGTCACTTGTTGTCCGAGCTGGAGCGGATAGACCAAATTCAGCAAGTATCTTCGTTGGTGGTTTTATATTGGGGGGGATAGTTGTTGGAGCATTAGGTTGTGTATATGCACCTCAGATAAGCAAGGCACTAGCTGGAGCCGACAGAAAAGACTTGATGAGAAAGCTACCAAAATTTATTTATGATGAAGAGAAAGCTCTTGAGAAAACCCGCAAAATACTGGCTGAGAAGATAGCGCAGCTAAATTCCGCCATAGATGACGTTTCTGCTCAGCTGCATGGAGATGATGCCCCGAATGGAGCCGCAGTGGCTTCCGATGAAGTTGAAGCTTCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.22

Weight (kDa)

8.55

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	179
AciI	CCGC	5 cut(s)	120, 179, 364, 402, 456
AclI	AACGTT	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	190, 326, 397
AgsI	TTSAA	3 cut(s)	69, 94, 479
AluBI	AGCT	8 cut(s)	142, 173, 287, 319, 350, 394, 427, 482
AluI	AGCT	8 cut(s)	142, 173, 287, 319, 350, 394, 427, 482
Alw21I	GWGCWC	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	391, 427
ApoI	RAATTY	3 cut(s)	190, 326, 397
AspLEI	GCGC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	403, 414
BfaI	CTAG	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	4 cut(s)	120, 392, 428, 456
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	4 cut(s)	121, 393, 429, 457
BmiI	GGNNCC	2 cut(s)	292, 454
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	195, 309
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse1I	ACTGG	3 cut(s)	64, 105, 378
BseMII	CTCAG	3 cut(s)	281, 369, 437
BseNI	ACTGG	3 cut(s)	64, 105, 378
BseXI	GCAGC	2 cut(s)	403, 414
BsiHKAI	GWGCWC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	5 cut(s)	120, 179, 364, 402, 456
BspCNI	CTCAG	3 cut(s)	280, 370, 436
BspLI	GGNNCC	2 cut(s)	292, 454
BspQI	GCTCTTC	1 cut(s)	15
BsrBI	CCGCTC	1 cut(s)	179
BsrI	ACTGG	3 cut(s)	64, 105, 378
Bst6I	CTCTTC	2 cut(s)	15, 336
BstDEI	CTNAG	3 cut(s)	267, 378, 423
BstHHI	GCGC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	403, 414
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
CfoI	GCGC	1 cut(s)	391
CviAII	CATG	1 cut(s)	431
DdeI	CTNAG	3 cut(s)	267, 378, 423
Eam1104I	CTCTTC	2 cut(s)	15, 336
EarI	CTCTTC	2 cut(s)	15, 336
EciI	GGCGGA	1 cut(s)	391
FaeI	CATG	1 cut(s)	434
FaiI	YATR	8 cut(s)	221, 259, 261, 336, 407, 432, 488, 490
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	430
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	4 cut(s)	120, 392, 428, 456
Fsp4HI	GCNGC	4 cut(s)	120, 392, 428, 456
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	4 cut(s)	120, 392, 428, 456
GsuI	CTGGAG	2 cut(s)	195, 309
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	1 cut(s)	434
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	1 cut(s)	37
Hpy188I	TCNGA	5 cut(s)	15, 36, 170, 270, 469
Hpy188III	TCNNGA	2 cut(s)	128, 353
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	96, 414
HpyCH4V	TGCA	2 cut(s)	263, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	3 cut(s)	267, 378, 423
HpySE526I	ACGT	2 cut(s)	96, 414
Hsp92II	CATG	1 cut(s)	434
HspAI	GCGC	1 cut(s)	389
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	4 cut(s)	176, 242, 290, 452
LpnPI	CCDG	7 cut(s)	45, 113, 118, 139, 159, 273, 359
Lsp1109I	GCAGC	2 cut(s)	403, 414
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	96, 414
MaeIII	GTNAC	1 cut(s)	156
MbiI	CCGCTC	1 cut(s)	179
MboII	GAAGA	4 cut(s)	57, 196, 353, 394
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	3 cut(s)	190, 326, 397
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	461
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	2 cut(s)	292, 454
NmuCI	GTSAC	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	121, 393, 429, 457
Psp1406I	AACGTT	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	292, 454
PvuII	CAGCTG	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	4 cut(s)	120, 392, 428, 456
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	190, 326, 397
SsiI	CCGC	5 cut(s)	120, 179, 364, 402, 456
SspMI	CTAG	1 cut(s)	284
TaiI	ACGT	2 cut(s)	99, 417
TasI	AATT	3 cut(s)	190, 326, 397
TauI	GCSGC	2 cut(s)	122, 458
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	2 cut(s)	391, 427
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	354, 486
TspRI	CASTG	1 cut(s)	465
XapI	RAATTY	3 cut(s)	190, 326, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.