Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

9460630 .. 9463139

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGTGCTCTTTCGAGCTCCTTCGTTTCACTTCAGAATCACAAGACCCACTTCTTGACTGGTTCTTCTTTGAAGCCAGTGAACCATTGTATTTTAAATGTTACGCCCAGTAAGCTTACATCAAACAAAAGGCCACTTGTTGTGCGAGCAGGTAGTGAAAAAAGTACTGCAGGCATCTTCGTTGGTGGATTTGTGTTGGGGGGCATAATTGTTGGAGCATTAGGCTGCGTGTATGCACCTCAGATAAGCAAGGCACTTGCAGTAGCTGGATCAGATAGAAAAGAGTTGATGAAGAAGCTGCCAAAATTCATATATGATGAAGAAAAAGCTCTTGAGAAAACCCGCAAAATACTGGCCGAGAAGATTTCACAGCTAAATTCTGCCATAGATGATGTTTCTGCTCAGCTGCATGCAGATGATGCCCCCCCAAATGGAGTTGCAGTATCTTCAGATGAAATTGAAGCTTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.6

Weight (kDa)

8.89

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	305, 376
AcuI	CTGAAG	2 cut(s)	17, 432
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	73, 461
AluBI	AGCT	8 cut(s)	18, 115, 266, 298, 329, 373, 406, 464
AluI	AGCT	8 cut(s)	18, 115, 266, 298, 329, 373, 406, 464
Alw21I	GWGCWC	2 cut(s)	10, 20
AlwI	GGATC	1 cut(s)	277
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	131, 354
ApeKI	GCWGC	3 cut(s)	225, 298, 406
ApoI	RAATTY	2 cut(s)	305, 376
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	10, 20
BbvI	GCAGC	3 cut(s)	212, 285, 393
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	226, 299, 407
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	3 cut(s)	227, 300, 408
BmcAI	AGTACT	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	183, 409
BmuI	ACTGGG	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	4 cut(s)	64, 77, 108, 357
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	254, 416
BseNI	ACTGG	4 cut(s)	64, 77, 108, 357
BseXI	GCAGC	3 cut(s)	212, 285, 393
BshFI	GGCC	2 cut(s)	133, 356
BsiHKAI	GWGCWC	2 cut(s)	10, 20
BslI	CCNNNNNNNGG	1 cut(s)	431
BsnI	GGCC	2 cut(s)	133, 356
Bsp1286I	GDGCHC	2 cut(s)	10, 20
Bsp143I	GATC	1 cut(s)	269
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	133, 356
BspCNI	CTCAG	2 cut(s)	253, 415
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	277
BsrI	ACTGG	4 cut(s)	64, 77, 108, 357
BssMI	GATC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	147, 172, 411
BstDEI	CTNAG	2 cut(s)	240, 402
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 419
BstNSI	RCATGY	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	212, 285, 393
BsuRI	GGCC	2 cut(s)	133, 356
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	147, 172, 411
CaiI	CAGNNNCTG	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	240, 402
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
DraI	TTTAAA	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	17, 432
EcoICRI	GAGCTC	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	1 cut(s)	413
FaiI	YATR	9 cut(s)	206, 234, 311, 313, 315, 386, 411, 470, 472
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	1 cut(s)	409
FauI	CCCGC	1 cut(s)	350
FauNDI	CATATG	1 cut(s)	470
Fnu4HI	GCNGC	3 cut(s)	226, 299, 407
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	226, 299, 407
GluI	GCNGC	3 cut(s)	226, 299, 407
HaeIII	GGCC	2 cut(s)	133, 356
Hin1II	CATG	1 cut(s)	413
HindIII	AAGCTT	2 cut(s)	113, 462
HinfI	GANTC	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	36, 243, 274, 451
Hpy188III	TCNNGA	2 cut(s)	55, 332
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	6 cut(s)	170, 236, 260, 409, 413, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 419
HpyF3I	CTNAG	2 cut(s)	240, 402
Hsp92II	CATG	1 cut(s)	413
Kzo9I	GATC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	23, 215
LpnPI	CCDG	7 cut(s)	45, 90, 121, 135, 156, 252, 338
Lsp1109I	GCAGC	3 cut(s)	212, 285, 393
LweI	GCATC	2 cut(s)	183, 409
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	6 cut(s)	57, 169, 304, 332, 373, 438
MhlI	GDGCHC	2 cut(s)	10, 20
MluCI	AATT	4 cut(s)	207, 305, 376, 456
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	112, 419
NdeI	CATATG	1 cut(s)	470
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	1 cut(s)	413
NmeAIII	GCCGAG	1 cut(s)	382
NspI	RCATGY	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	227, 300, 408
Psp124BI	GAGCTC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	3 cut(s)	226, 299, 407
Sau3AI	GATC	1 cut(s)	269
ScaI	AGTACT	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	10, 20
SfaNI	GCATC	2 cut(s)	183, 409
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	4 cut(s)	207, 305, 376, 456
SsiI	CCGC	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	20
TaqI	TCGA	1 cut(s)	14
TasI	AATT	4 cut(s)	207, 305, 376, 456
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	3 cut(s)	225, 298, 406
TspDTI	ATGAA	4 cut(s)	298, 305, 333, 468
TspRI	CASTG	1 cut(s)	84
XapI	RAATTY	2 cut(s)	305, 376
XceI	RCATGY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.