Rh2CG114000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002670
Physical Location & Seq
Forward (+)
10022272 .. 10024883
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG114000.1

Sequence Viewer

Length: 402 bp
ATGAGTGCTCTTTCGAGCTCCTTCGTTTCACTTCAGAATCACAAGACCCACTTCTTGACTGGTTCTTCTTTGAAGCCAGTGAACCATTGTATTTTAAATGTTACGCCCAGTAAGCTTACATCAAACAAAAGGCCACTTGTTGTGCGAGCAGGTAGTGAAAAAAGTACTGCAGGCATCTTCGTTGGTGGATTTGTGTTGGGGGGCATAATTGTTGGAGCATTAGGCTGCGTGTATGCACCTCAGATAAGCAAGGCACTTGCAGTAGCTGGATCAGATAGAAAAGAGTTGATGAAGAAGCTGCCAAAATTCATATATGATGAAGAAAAAGCTCTTGAGGTGAGAATTTATTTGTTCCTGCATTTAGCTTTGGTGATGAGAAAGGTTAGGATTATGCAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.48

Weight (kDa)

10.07

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 140, 385
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 305, 342
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 6 cut(s) 18, 115, 266, 298, 329, 365
AluI AGCT 6 cut(s) 18, 115, 266, 298, 329, 365
Alw21I GWGCWC 2 cut(s) 10, 20
AlwI GGATC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 225, 298
ApoI RAATTY 2 cut(s) 305, 342
AsuHPI GGTGA 2 cut(s) 349, 382
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 10, 20
BbvI GCAGC 2 cut(s) 212, 285
BfaI CTAG 1 cut(s) 400
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 2 cut(s) 140, 385
BisI GCNGC 2 cut(s) 226, 299
BlsI GCNGC 2 cut(s) 227, 300
BmcAI AGTACT 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 64, 77, 108
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 3 cut(s) 64, 77, 108
BseXI GCAGC 2 cut(s) 212, 285
BshFI GGCC 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 10, 20
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 10, 20
Bsp143I GATC 1 cut(s) 269
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 172
BspMI ACCTGC 2 cut(s) 140, 385
BspPI GGATC 1 cut(s) 277
BsrI ACTGG 3 cut(s) 64, 77, 108
BssMI GATC 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 147, 172
BstDEI CTNAG 1 cut(s) 240
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 212, 285
BsuRI GGCC 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 2 cut(s) 140, 385
Cac8I GCNNGC 2 cut(s) 147, 172
CaiI CAGNNNCTG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 165
CviJI RGCY 9 cut(s) 18, 76, 115, 133, 225, 266, 298, 329, 365
CviKI_1 RGCY 9 cut(s) 18, 76, 115, 133, 225, 266, 298, 329, 365
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DraI TTTAAA 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaiI YATR 6 cut(s) 206, 234, 311, 313, 315, 392
FalI AAGNNNNNCTT 2 cut(s) 35, 67
Fnu4HI GCNGC 2 cut(s) 226, 299
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 226, 299
FspBI CTAG 1 cut(s) 400
GluI GCNGC 2 cut(s) 226, 299
HaeIII GGCC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 37
HphI GGTGA 2 cut(s) 349, 382
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 36, 243, 274
Hpy188III TCNNGA 2 cut(s) 55, 332
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 5 cut(s) 170, 236, 260, 358, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 240
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 23, 215
LpnPI CCDG 8 cut(s) 45, 90, 121, 135, 156, 252, 368, 380
Lsp1109I GCAGC 2 cut(s) 212, 285
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 4 cut(s) 57, 169, 304, 332
MhlI GDGCHC 2 cut(s) 10, 20
MluCI AATT 3 cut(s) 207, 305, 342
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 2 cut(s) 249, 328
MseI TTAA 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 227, 300
Psp124BI GAGCTC 1 cut(s) 20
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 226, 299
Sau3AI GATC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 166
SduI GDGCHC 2 cut(s) 10, 20
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 3 cut(s) 207, 305, 342
SspMI CTAG 1 cut(s) 400
SstI GAGCTC 1 cut(s) 20
TaqI TCGA 1 cut(s) 14
TasI AATT 3 cut(s) 207, 305, 342
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 84
TseI GCWGC 2 cut(s) 225, 298
TspDTI ATGAA 3 cut(s) 298, 305, 333
TspRI CASTG 1 cut(s) 84
XapI RAATTY 2 cut(s) 305, 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XspI CTAG 1 cut(s) 400
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.