Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

6114703 .. 6117084

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGTGCTCTTCCGAGTTCCTTCGTTTCAGTTCCGAATCACAAAACCCACTTCTTAACTGGTTCTTCAAAGCCAACCTACCATTGTCTTTTGAACGTTGGTCCCAGTAATCTAAATGCTGCATTTCAGGACAAAGCAAAGCTTACTTCACATAGAAGGTCACTTGTTGTCCGAGCTGGAGCGGATAGACCAAGTTCTGCAAGTATCTTCATTGGCGGGTTTGTATTGGGGGGGATAGTTGTTGGAGCATTAGGTTGTGTATATGCACCTCAGATAAGCAAGGCACTAGCTGGAGCCGACAGAAAAGACTTGATGAGGAAGCTACCAAAATTTATTTATGATGAAGAGAAAGCTCTTGAGAAAACCCGCAAAATACTGGCTGAGAAGATTGCGCAGCTAAATTCCGCCATAGATGACGTTTCTGCTCAGCTGCATGGAGATGATGCCCCGAATGGAGCTGCAGTGGCTTCCGATGAAGTTGAAGCTTCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.33

Weight (kDa)

8.91

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	4 cut(s)	182, 216, 367, 405
AclI	AACGTT	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	329, 400
AgsI	TTSAA	3 cut(s)	69, 94, 482
AluBI	AGCT	9 cut(s)	142, 176, 290, 322, 353, 397, 430, 458, 485
AluI	AGCT	9 cut(s)	142, 176, 290, 322, 353, 397, 430, 458, 485
Alw21I	GWGCWC	1 cut(s)	10
ApeKI	GCWGC	4 cut(s)	119, 394, 430, 458
ApoI	RAATTY	2 cut(s)	329, 400
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	4 cut(s)	106, 406, 417, 445
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	4 cut(s)	120, 395, 431, 459
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	121, 396, 432, 460
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	103, 295
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	198, 312
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bse1I	ACTGG	3 cut(s)	64, 105, 381
BseMII	CTCAG	3 cut(s)	284, 372, 440
BseNI	ACTGG	3 cut(s)	64, 105, 381
BseXI	GCAGC	4 cut(s)	106, 406, 417, 445
BsiHKAI	GWGCWC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	4 cut(s)	182, 216, 367, 405
BspCNI	CTCAG	3 cut(s)	283, 373, 439
BspLI	GGNNCC	2 cut(s)	103, 295
BspMAI	CTGCAG	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	15
BsrBI	CCGCTC	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	64, 105, 381
Bst6I	CTCTTC	2 cut(s)	15, 339
BstDEI	CTNAG	3 cut(s)	270, 381, 426
BstHHI	GCGC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	106, 406, 417, 445
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	101
CviAII	CATG	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	270, 381, 426
Eam1104I	CTCTTC	2 cut(s)	15, 339
EarI	CTCTTC	2 cut(s)	15, 339
EciI	GGCGGA	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	101
FaeI	CATG	1 cut(s)	437
FaiI	YATR	8 cut(s)	153, 262, 264, 339, 410, 435, 491, 493
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	433
FauI	CCCGC	2 cut(s)	209, 374
Fnu4HI	GCNGC	4 cut(s)	120, 395, 431, 459
Fsp4HI	GCNGC	4 cut(s)	120, 395, 431, 459
FspBI	CTAG	1 cut(s)	287
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	4 cut(s)	120, 395, 431, 459
GsuI	CTGGAG	2 cut(s)	198, 312
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HindIII	AAGCTT	2 cut(s)	140, 483
HinfI	GANTC	1 cut(s)	37
Hpy188I	TCNGA	5 cut(s)	15, 36, 173, 273, 472
Hpy188III	TCNNGA	2 cut(s)	128, 356
HpyAV	CCTTC	2 cut(s)	31, 150
HpyCH4IV	ACGT	2 cut(s)	96, 417
HpyCH4V	TGCA	5 cut(s)	122, 200, 266, 433, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	3 cut(s)	270, 381, 426
HpySE526I	ACGT	2 cut(s)	96, 417
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	1 cut(s)	392
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	4 cut(s)	179, 245, 293, 455
LpnPI	CCDG	6 cut(s)	45, 113, 118, 162, 276, 362
Lsp1109I	GCAGC	4 cut(s)	106, 406, 417, 445
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	2 cut(s)	96, 417
MaeIII	GTNAC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	182
MboII	GAAGA	4 cut(s)	57, 199, 356, 397
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	329, 400
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	279, 309
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	430
MwoI	GCNNNNNNNGC	1 cut(s)	464
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	2 cut(s)	103, 295
NmuCI	GTSAC	1 cut(s)	159
NsbI	TGCGCA	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	121, 396, 432, 460
Psp1406I	AACGTT	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	103, 295
PspPI	GGNCC	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	4 cut(s)	120, 395, 431, 459
Sau96I	GGNCC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	329, 400
SsiI	CCGC	4 cut(s)	182, 216, 367, 405
SspMI	CTAG	1 cut(s)	287
TaiI	ACGT	2 cut(s)	99, 420
TasI	AATT	2 cut(s)	329, 400
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	4 cut(s)	119, 394, 430, 458
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	199, 357, 489
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	329, 400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.