Rh7DG299200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002670
Physical Location & Seq
Reverse (-)
34177741 .. 34182297
4557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG299200.1

Sequence Viewer

Length: 432 bp
ATGTCTGCTATTTCGAATTCGCTGGCTCTCACTACAAATGCTTCTGGATCTTCTCTGAAGCAAGCCCAACAATGTCTTGGGTTTATGGCCCCTACGAACTTGTCACTCAATTCAAACCGTGCCGGTAATGTTCAACTTTCGAGCTCCAAGAGGTCTTTCGCGGTTCGAGCCTCATACAGTGATGGTGGGAGGTCAAACAGTGGAAGCATCTTTATCAGTGGCTTTGTTTTGGGAGGACTTATAGTTGGCACACTGGGTTGTGTATATGCTCCTCAGATCAGTAAAACACTTGCTGGAGCTGACCGAAAGGAGCTAATGAGAAAGCTTCCCAATTTCTTGTATGATGAAGAAAAAGAAGTGGAGGTGAGAAGTCGCCCTTGCAATGATGTTTTGAACTGGCATTCTCTGTTTGCTATTCTATGTGTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.31

Weight (kDa)

9.27

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 77
AgsI TTSAA 3 cut(s) 114, 134, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 144, 299, 313, 325
AluI AGCT 4 cut(s) 144, 299, 313, 325
Alw21I GWGCWC 1 cut(s) 146
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 376
AsuII TTCGAA 1 cut(s) 14
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BccI CCATC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 90
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 258, 401
Bse3DI GCAATG 1 cut(s) 388
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 258, 401
BseRI GAGGAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 123
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 47, 276
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 258, 401
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 2 cut(s) 47, 276
Bst4CI ACNGT 3 cut(s) 119, 179, 200
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 24, 63
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 2 cut(s) 50, 279
BstMBI GATC 2 cut(s) 47, 276
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstUI CGCG 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 1 cut(s) 89
BtsIMutI CAGTG 4 cut(s) 184, 205, 223, 251
Cac8I GCNNGC 2 cut(s) 24, 63
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 88
CviJI RGCY 9 cut(s) 26, 65, 89, 144, 170, 222, 299, 313, 325
CviKI_1 RGCY 9 cut(s) 26, 65, 89, 144, 170, 222, 299, 313, 325
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 49, 278
DpnII GATC 2 cut(s) 47, 276
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 146
FaiI YATR 7 cut(s) 86, 175, 242, 265, 267, 342, 421
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FriOI GRGCYC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 323
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 57, 276
Hpy188III TCNNGA 1 cut(s) 45
HpyCH4III ACNGT 3 cut(s) 119, 179, 200
HpyCH4V TGCA 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 273
Kzo9I GATC 2 cut(s) 47, 276
LmnI GCTCC 4 cut(s) 149, 274, 296, 310
LpnPI CCDG 6 cut(s) 8, 30, 136, 239, 279, 382
LweI GCATC 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 102
MalI GATC 2 cut(s) 49, 278
MboI GATC 2 cut(s) 47, 276
MboII GAAGA 2 cut(s) 42, 359
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 3 cut(s) 16, 109, 331
MnlI CCTC 6 cut(s) 144, 181, 183, 227, 282, 355
MspI CCGG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 400
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 47, 276
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 102
NspV TTCGAA 1 cut(s) 14
PctI GAATGC 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 47
SacI GAGCTC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 47, 276
Sau96I GGNCC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 146
SetI ASST 7 cut(s) 146, 155, 194, 301, 315, 327, 366
SfaNI GCATC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 14
Sse9I AATT 3 cut(s) 16, 109, 331
SsiI CCGC 1 cut(s) 161
SstI GAGCTC 1 cut(s) 146
TaaI ACNGT 3 cut(s) 119, 179, 200
TaqI TCGA 3 cut(s) 14, 140, 166
TaqII GACCGA 1 cut(s) 318
TasI AATT 3 cut(s) 16, 109, 331
TscAI CASTG 4 cut(s) 184, 205, 223, 258
TseFI GTSAC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 360
TspRI CASTG 4 cut(s) 184, 205, 223, 258
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.