Rroxscaffold_2G00145140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002670
Physical Location & Seq
Reverse (-)
83020094 .. 83022687
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145140.1

Sequence Viewer

Length: 582 bp
ATGAGTGCTGTTTCGAGCTCCTTCGTTTCACTTCAGAATCACAAGACCCACTTCTTGACTGGTTCTTCTTCGAAGCCAGTGAACCATTGTATTTTGAACGTTACGCCCAGTAAGCTTACATCAAACAAAAGGCCACTTGTTGTGCGAGCAGGTAGTGAAAAAAGTACTGCAGGCATCTTCGTTGGTGGATTTGTGTTGGGGGGCATAATTGTTGGAGCATTAGGCTGCGTGTATGCACCTCAGATAAGCAAGGCACTTGCAGTAGCTGGATCAGATAGAAAAGAGTTGATGAAGAAGCTGCCAAAATTCATATATGATGAAGAAAAAGCTCTTGAGAAAACCCGCAAAATACTGGCTGAGAAGATTTCACAGCTAAATTCTGCCATAGATGATGTTTCTGCTCAGCTGCATGCAGATGATGCCCCCCAAATGGAGTTGCAGTATCTTCAGATGAAATTGAAGCTTCCATATGATATAGTATCTGCAGAGTTTTTTGTTGAACTTGTTACATGTGTTTGGCATCGAGAAATAATGTTTAAAGTCTTCTTCTCATTTGTTTACCTTGTTTATAAACACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.37

Weight (kDa)

9.19

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 140
AciI CCGC 1 cut(s) 343
AclI AACGTT 1 cut(s) 99
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 305, 376
AcuI CTGAAG 2 cut(s) 17, 431
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 3 cut(s) 97, 460, 500
AluBI AGCT 8 cut(s) 18, 115, 266, 298, 329, 373, 406, 463
AluI AGCT 8 cut(s) 18, 115, 266, 298, 329, 373, 406, 463
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 225, 298, 406
ApoI RAATTY 2 cut(s) 305, 376
AsuII TTCGAA 1 cut(s) 71
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 212, 285, 393
BfmI CTRYAG 2 cut(s) 168, 483
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 3 cut(s) 226, 299, 407
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 3 cut(s) 227, 300, 408
BmcAI AGTACT 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 3 cut(s) 183, 409, 529
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 535
Bpu1102I GCTNAGC 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 4 cut(s) 64, 77, 108, 357
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 3 cut(s) 254, 348, 416
BseNI ACTGG 4 cut(s) 64, 77, 108, 357
BseXI GCAGC 3 cut(s) 212, 285, 393
BshFI GGCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 430
BsnI GGCC 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 269
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 3 cut(s) 253, 349, 415
BspMAI CTGCAG 2 cut(s) 172, 487
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 277
BspT104I TTCGAA 1 cut(s) 71
BsrI ACTGG 4 cut(s) 64, 77, 108, 357
BssMI GATC 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 3 cut(s) 147, 172, 411
BstDEI CTNAG 3 cut(s) 240, 357, 402
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 112, 419
BstNSI RCATGY 2 cut(s) 413, 513
BstSFI CTRYAG 2 cut(s) 168, 483
BstV1I GCAGC 3 cut(s) 212, 285, 393
BstV2I GAAGAC 1 cut(s) 535
BsuRI GGCC 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 147, 172, 411
CaiI CAGNNNCTG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 410, 510
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 3 cut(s) 240, 357, 402
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DraI TTTAAA 1 cut(s) 538
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 17, 431
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 2 cut(s) 413, 513
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 2 cut(s) 409, 509
FauI CCCGC 1 cut(s) 350
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 3 cut(s) 226, 299, 407
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 226, 299, 407
GluI GCNGC 3 cut(s) 226, 299, 407
HaeIII GGCC 1 cut(s) 133
Hin1II CATG 2 cut(s) 413, 513
HindIII AAGCTT 2 cut(s) 113, 461
HinfI GANTC 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 82, 559
Hpy188I TCNGA 4 cut(s) 36, 243, 274, 450
Hpy188III TCNNGA 3 cut(s) 55, 332, 524
Hpy8I GTNNAC 2 cut(s) 82, 559
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 578
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 7 cut(s) 170, 236, 260, 409, 413, 439, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 419
HpyF3I CTNAG 3 cut(s) 240, 357, 402
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 2 cut(s) 413, 513
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 23, 215
LpnPI CCDG 7 cut(s) 45, 90, 121, 135, 156, 252, 338
Lsp1109I GCAGC 3 cut(s) 212, 285, 393
LweI GCATC 3 cut(s) 183, 409, 529
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 100, 505
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 9 cut(s) 57, 60, 169, 304, 332, 373, 437, 535, 538
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 4 cut(s) 207, 305, 376, 455
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 1 cut(s) 249
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 112, 419
NdeI CATATG 1 cut(s) 469
NdeII GATC 1 cut(s) 269
NlaIII CATG 2 cut(s) 413, 513
NspI RCATGY 2 cut(s) 413, 513
NspV TTCGAA 1 cut(s) 71
PaeI GCATGC 1 cut(s) 413
PciI ACATGT 1 cut(s) 509
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 3 cut(s) 227, 300, 408
PscI ACATGT 1 cut(s) 509
PsiI TTATAA 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 20
Psp1406I AACGTT 1 cut(s) 99
PstI CTGCAG 2 cut(s) 172, 487
PstNI CAGNNNCTG 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 226, 299, 407
Sau3AI GATC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 166
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 3 cut(s) 183, 409, 529
SfcI CTRYAG 2 cut(s) 168, 483
SfuI TTCGAA 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 413
Sse9I AATT 4 cut(s) 207, 305, 376, 455
SsiI CCGC 1 cut(s) 343
SstI GAGCTC 1 cut(s) 20
TaaI ACNGT 1 cut(s) 578
TaiI ACGT 1 cut(s) 102
TaqI TCGA 3 cut(s) 14, 71, 523
TasI AATT 4 cut(s) 207, 305, 376, 455
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 84
TseI GCWGC 3 cut(s) 225, 298, 406
TspDTI ATGAA 4 cut(s) 298, 305, 333, 467
TspRI CASTG 1 cut(s) 84
XapI RAATTY 2 cut(s) 305, 376
XceI RCATGY 2 cut(s) 413, 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.