Rmu_sc0001651.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001651.1
OG0002670
Physical Location & Seq
Forward (+)
8976 .. 13646
4671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001651.1_g000004.1.cds

Sequence Viewer

Length: 423 bp
atgagtgctctttcgagctccttcgtttcacttcagaatcacaagacccacttcttgactggttcttcttcgaagccagtgaaccattgtattttaaatgttacgcccagtaagcttacatcaaacaaaaggccacttgttgtgcgagcaggtagtgaaaaaagtaccgcaggcatcttcgttggtggatttgtgttggggggcataattgttggagcattaggctgcgtgtatgcacctcagataagcaaggcacttgcagtagctggatcagatagaaaagagttgatgaagaagctgccaaaattcatatatgatgaagaaaaagctcttgagaaaacccgcaaaatactggccgagaagatttcacagctaaattctgccatagatgatgtttctgcttccaaagattaccttctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.98

Weight (kDa)

9.63

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AciI CCGC 2 cut(s) 168, 343
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 2 cut(s) 305, 376
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 1 cut(s) 166
AluBI AGCT 6 cut(s) 18, 115, 266, 298, 329, 373
AluI AGCT 6 cut(s) 18, 115, 266, 298, 329, 373
Alw21I GWGCWC 2 cut(s) 10, 20
AlwI GGATC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 2 cut(s) 131, 354
ApeKI GCWGC 2 cut(s) 225, 298
ApoI RAATTY 2 cut(s) 305, 376
AsuII TTCGAA 1 cut(s) 71
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 10, 20
BbvI GCAGC 2 cut(s) 212, 285
BfmI CTRYAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 226, 299
BlsI GCNGC 2 cut(s) 227, 300
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 353
Bse1I ACTGG 4 cut(s) 64, 77, 108, 357
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 4 cut(s) 64, 77, 108, 357
BseXI GCAGC 2 cut(s) 212, 285
BshFI GGCC 2 cut(s) 133, 356
BsiHKAI GWGCWC 2 cut(s) 10, 20
BsnI GGCC 2 cut(s) 133, 356
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 10, 20
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 2 cut(s) 168, 343
BspANI GGCC 2 cut(s) 133, 356
BspCNI CTCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 277
BspT104I TTCGAA 1 cut(s) 71
BsrI ACTGG 4 cut(s) 64, 77, 108, 357
BssMI GATC 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 147, 172
BstDEI CTNAG 1 cut(s) 240
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 212, 285
BsuRI GGCC 2 cut(s) 133, 356
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 147, 172
CaiI CAGNNNCTG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 165
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DraI TTTAAA 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaiI YATR 6 cut(s) 206, 234, 311, 313, 315, 386
FalI AAGNNNNNCTT 3 cut(s) 35, 67, 399
FauI CCCGC 1 cut(s) 350
Fnu4HI GCNGC 2 cut(s) 226, 299
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 226, 299
GluI GCNGC 2 cut(s) 226, 299
HaeIII GGCC 2 cut(s) 133, 356
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 36, 243, 274
Hpy188III TCNNGA 2 cut(s) 55, 332
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 236, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 240
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 23, 215
LpnPI CCDG 7 cut(s) 45, 90, 121, 135, 156, 252, 338
Lsp1109I GCAGC 2 cut(s) 212, 285
LweI GCATC 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 6 cut(s) 57, 60, 169, 304, 332, 373
MhlI GDGCHC 2 cut(s) 10, 20
MluCI AATT 3 cut(s) 207, 305, 376
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 1 cut(s) 249
MseI TTAA 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 269
NmeAIII GCCGAG 1 cut(s) 382
NspV TTCGAA 1 cut(s) 71
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 227, 300
Psp124BI GAGCTC 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 226, 299
Sau3AI GATC 1 cut(s) 269
SduI GDGCHC 2 cut(s) 10, 20
SetI ASST 9 cut(s) 20, 117, 154, 241, 268, 300, 331, 375, 417
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 419
SfuI TTCGAA 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 3 cut(s) 207, 305, 376
SsiI CCGC 2 cut(s) 168, 343
SstI GAGCTC 1 cut(s) 20
TaqI TCGA 2 cut(s) 14, 71
TasI AATT 3 cut(s) 207, 305, 376
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 84
TseI GCWGC 2 cut(s) 225, 298
TspDTI ATGAA 3 cut(s) 298, 305, 333
TspRI CASTG 1 cut(s) 84
XapI RAATTY 2 cut(s) 305, 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.