MD02G1113800.v1.1

Transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
9257435 .. 9260214
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1113800.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGGTTTCTGGACGCTGTTGGAGGTGGCTTGCATGCCAATTTTCCAAGTTCTCATAATCAGTGTGTTGGGAGCTTTGATGGCAACTGAGTACTGGAATCTTCTCCCATCGGGCGCCCGAAGGTCCATGAACAAGGTTGTGTTTGTGGTGTTCACTCCCTCACTGGTGTTTGCAAATGTGGCCAAGACTATTACATTTGGGGACATTGTTTCATGGTGGTTTATGATTGTCAACGTCGCGCTTACCTTTGTAGTTGGAGGGATTCTTGGATGGATTGTGGTAAAGATTTTCAAACCAAAACCTTACCAGGAAGGTGTGATAATTGCTGCAGTCTCATCAGCAAACTTGGGAAACCTTCCCCTCATACTTGTCCCTGCAATCTGCAATGAGGACGGAAACCCCTTTGGCAATCATAGTGTTTGTAGTACGATTGGACTCTCATACGTATCTTTTTCCATGGCGCTTGGTGGTTTCTTCATTTGGACCTACACTTACCAGCTGATTCGAACTTCATCTATTACATGGAAAAAGCTTCAAGCAGCCGAGGAAGCTCAGGAGGCCACAAAGAGGCCCAACACAGATTTGGATGCTAACGGGGATACTCACCTTCTCAAAGGAGAAGATGAAGAGCAGGGTGCTATTGTAGCGTCTGAAACTTCTGTAAACCAAGCTATAGTAGCCCCTGATGAATCAAACGTACCATTCAGCCATAAAGTATTAGCATTCGTTCGCCAGATTTTGCATGAGTTACTGGCACCACCAACACTTGCTGCGGTTGTGGGATTCGTCGTTGGGGCAATTCCATTTCTTAAGAAAATAATAATTGGTGACGACGCCCCTCTACGTGCGATCGAAGACTCTATTACACAACTCGGGAACGGTACAATCCCTTGCATCACACTCATTCTCGGAGGCAATCTGATCCAAGGCTTACGTAAATCAACGATCAAACTCCCTGCCCTCCTCGGAGTGATTGTTGCCAAATACGTAGTAATGCCTGCAATCGGTATTCTCATTGTAAGAGCAGCAGACAAACTAGGGTTTCTCCCATCAGACCCCTTGTTCCACTTTGTGCTGATGATTCAGTTTACCCTGCCGCCTGCCATGAATATCGGTACGATGACACAGCTGTTTGATGTGGCTGAGGCAGAGTGCTCAGTGCTCTTCCTGTGGACGTACTTGGTTGCAGCCTTGGCACTTACCATTTGGTCAACAATCTTCATGTGGATCTTGTCTTGA

Protein Analysis

413

Amino Acids

44.74

Weight (kDa)

5.58

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 403 3.6e-84 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 113, 754
AccII CGCG 1 cut(s) 239
AciI CCGC 2 cut(s) 773, 1097
AclWI GGATC 2 cut(s) 916, 1235
AcoI YGGCCR 1 cut(s) 180
AcyI GRCGYC 2 cut(s) 114, 834
AdeI CACNNNGTG 1 cut(s) 1072
AfaI GTAC 6 cut(s) 92, 427, 699, 883, 1117, 1178
AfiI CCNNNNNNNGG 2 cut(s) 567, 1004
AflII CTTAAG 1 cut(s) 809
AgsI TTSAA 2 cut(s) 292, 536
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 6 cut(s) 74, 499, 532, 551, 671, 1129
AluI AGCT 6 cut(s) 74, 499, 532, 551, 671, 1129
Alw21I GWGCWC 2 cut(s) 1157, 1164
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 2 cut(s) 916, 1235
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 3 cut(s) 180, 558, 569
ApeKI GCWGC 5 cut(s) 326, 539, 770, 1025, 1187
AspLEI GCGC 3 cut(s) 116, 241, 463
AspS9I GGNCC 3 cut(s) 123, 483, 570
AsuHPI GGTGA 2 cut(s) 596, 839
AsuII TTCGAA 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 2 cut(s) 123, 483
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 2 cut(s) 113, 754
BbsI GAAGAC 1 cut(s) 861
Bbv12I GWGCWC 2 cut(s) 1157, 1164
BbvCI CCTCAGC 1 cut(s) 1143
BbvI GCAGC 5 cut(s) 313, 551, 757, 1037, 1199
BccI CCATC 4 cut(s) 73, 115, 264, 1057
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 1037
BfmI CTRYAG 2 cut(s) 327, 672
BfoI RGCGCY 2 cut(s) 117, 464
BfrI CTTAAG 1 cut(s) 809
BfuI GTATCC 1 cut(s) 592
BisI GCNGC 6 cut(s) 327, 540, 771, 1026, 1097, 1188
BlsI GCNGC 6 cut(s) 328, 541, 772, 1027, 1098, 1189
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 123, 483
BmeT110I CYCGRG 1 cut(s) 872
BmgT120I GGNCC 3 cut(s) 123, 483, 570
BmiI GGNNCC 2 cut(s) 115, 756
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 577, 903
BpiI GAAGAC 1 cut(s) 861
Bpu10I CCTNAGC 2 cut(s) 552, 1143
Bpu14I TTCGAA 1 cut(s) 505
BsaAI YACGTR 4 cut(s) 445, 845, 935, 988
BsaHI GRCGYC 2 cut(s) 114, 834
BsaJI CCNNGG 5 cut(s) 456, 543, 925, 964, 1191
BsaXI ACNNNNNCTCC 2 cut(s) 960, 990
Bsc4I CCNNNNNNNGG 2 cut(s) 567, 1004
Bse1I ACTGG 3 cut(s) 98, 168, 756
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 5 cut(s) 456, 543, 925, 964, 1191
BseGI GGATG 2 cut(s) 275, 592
BseLI CCNNNNNNNGG 2 cut(s) 567, 1004
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 4 cut(s) 78, 566, 1134, 1170
BseNI ACTGG 3 cut(s) 98, 168, 756
BseRI GAGGAG 1 cut(s) 953
BseXI GCAGC 5 cut(s) 313, 551, 757, 1037, 1199
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 852
BshFI GGCC 3 cut(s) 182, 560, 571
BshNI GGYRCC 2 cut(s) 113, 754
BsiEI CGRYCG 1 cut(s) 852
BsiHKAI GWGCWC 2 cut(s) 1157, 1164
BsiHKCI CYCGRG 1 cut(s) 872
BslFI GGGAC 2 cut(s) 215, 356
BslI CCNNNNNNNGG 2 cut(s) 567, 1004
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 2 cut(s) 215, 356
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 3 cut(s) 182, 560, 571
BsoBI CYCGRG 1 cut(s) 872
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 1157, 1164
Bsp143I GATC 4 cut(s) 849, 921, 945, 1227
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 2 cut(s) 773, 1097
BspANI GGCC 3 cut(s) 182, 560, 571
BspCNI CTCAG 4 cut(s) 79, 565, 1135, 1169
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 2 cut(s) 115, 756
BspMAI CTGCAG 1 cut(s) 331
BspPI GGATC 2 cut(s) 916, 1235
BspQI GCTCTTC 2 cut(s) 621, 1169
BspT104I TTCGAA 1 cut(s) 505
BspT107I GGYRCC 2 cut(s) 113, 754
BspTI CTTAAG 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 3 cut(s) 98, 168, 756
BssECI CCNNGG 5 cut(s) 456, 543, 925, 964, 1191
BssMI GATC 4 cut(s) 849, 921, 945, 1227
BssNI GRCGYC 2 cut(s) 114, 834
BssT1I CCWWGG 3 cut(s) 456, 925, 1191
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 881
Bst6I CTCTTC 2 cut(s) 621, 1169
BstACI GRCGYC 2 cut(s) 114, 834
BstAFI CTTAAG 1 cut(s) 809
BstBAI YACGTR 4 cut(s) 445, 845, 935, 988
BstBI TTCGAA 1 cut(s) 505
BstC8I GCNNGC 4 cut(s) 31, 35, 999, 1101
BstDEI CTNAG 4 cut(s) 87, 552, 1143, 1156
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 275, 592
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 2 cut(s) 117, 464
BstHHI GCGC 3 cut(s) 116, 241, 463
BstKTI GATC 4 cut(s) 852, 924, 948, 1230
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 4 cut(s) 849, 921, 945, 1227
BstMCI CGRYCG 1 cut(s) 852
BstMWI GCNNNNNNNGC 7 cut(s) 80, 179, 548, 557, 644, 677, 1193
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 2 cut(s) 327, 672
BstSNI TACGTA 3 cut(s) 445, 935, 988
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 5 cut(s) 313, 551, 757, 1037, 1199
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 1227
BstYI RGATCY 1 cut(s) 1227
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 3 cut(s) 182, 560, 571
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 275, 592
BtsIMutI CAGTG 3 cut(s) 67, 161, 1164
Cac8I GCNNGC 4 cut(s) 31, 35, 999, 1101
CfoI GCGC 3 cut(s) 116, 241, 463
Cfr13I GGNCC 3 cut(s) 123, 483, 570
CseI GACGC 3 cut(s) 22, 636, 842
Csp6I GTAC 6 cut(s) 91, 426, 698, 882, 1116, 1177
CviAII CATG 8 cut(s) 34, 127, 213, 457, 522, 743, 1105, 1222
CviQI GTAC 6 cut(s) 91, 426, 698, 882, 1116, 1177
DdeI CTNAG 4 cut(s) 87, 552, 1143, 1156
DinI GGCGCC 1 cut(s) 115
DpnI GATC 4 cut(s) 851, 923, 947, 1229
DpnII GATC 4 cut(s) 849, 921, 945, 1227
DraIII CACNNNGTG 1 cut(s) 1072
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 621, 1169
EarI CTCTTC 2 cut(s) 621, 1169
Eco105I TACGTA 3 cut(s) 445, 935, 988
Eco130I CCWWGG 3 cut(s) 456, 925, 1191
Eco47I GGWCC 2 cut(s) 123, 483
Eco88I CYCGRG 1 cut(s) 872
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 3 cut(s) 456, 925, 1191
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 3 cut(s) 456, 925, 1191
FaeI CATG 8 cut(s) 37, 130, 216, 460, 525, 746, 1108, 1225
FaqI GGGAC 2 cut(s) 215, 356
FatI CATG 8 cut(s) 33, 126, 212, 456, 521, 742, 1104, 1221
Fnu4HI GCNGC 6 cut(s) 327, 540, 771, 1026, 1097, 1188
FokI GGATG 2 cut(s) 282, 599
Fsp4HI GCNGC 6 cut(s) 327, 540, 771, 1026, 1097, 1188
FspBI CTAG 1 cut(s) 1037
GlaI GCGC 3 cut(s) 115, 240, 462
GluI GCNGC 6 cut(s) 327, 540, 771, 1026, 1097, 1188
HaeII RGCGCY 2 cut(s) 117, 464
HaeIII GGCC 3 cut(s) 182, 560, 571
HgaI GACGC 3 cut(s) 22, 636, 842
HhaI GCGC 3 cut(s) 116, 241, 463
Hin1I GRCGYC 2 cut(s) 114, 834
Hin1II CATG 8 cut(s) 37, 130, 216, 460, 525, 746, 1108, 1225
Hin6I GCGC 3 cut(s) 114, 239, 461
HinP1I GCGC 3 cut(s) 114, 239, 461
HincII GTYRAC 2 cut(s) 232, 1212
HindII GTYRAC 2 cut(s) 232, 1212
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 8 cut(s) 97, 262, 435, 502, 689, 783, 857, 1081
HphI GGTGA 2 cut(s) 596, 839
Hpy166II GTNNAC 6 cut(s) 153, 232, 664, 1089, 1173, 1212
Hpy188I TCNGA 5 cut(s) 652, 911, 921, 968, 1054
Hpy188III TCNNGA 4 cut(s) 10, 554, 874, 1236
Hpy8I GTNNAC 6 cut(s) 153, 232, 664, 1089, 1173, 1212
Hpy99I CGWCG 3 cut(s) 239, 791, 836
HpyAV CCTTC 4 cut(s) 114, 305, 365, 617
HpyCH4III ACNGT 1 cut(s) 881
HpyCH4IV ACGT 7 cut(s) 234, 444, 696, 844, 934, 987, 1175
HpyCH4V TGCA 9 cut(s) 33, 173, 329, 377, 384, 742, 894, 1001, 1187
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 179, 548, 557, 644, 677, 1193
HpyF3I CTNAG 4 cut(s) 87, 552, 1143, 1156
HpySE526I ACGT 7 cut(s) 234, 444, 696, 844, 934, 987, 1175
Hsp92I GRCGYC 2 cut(s) 114, 834
Hsp92II CATG 8 cut(s) 37, 130, 216, 460, 525, 746, 1108, 1225
HspAI GCGC 3 cut(s) 114, 239, 461
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 4 cut(s) 849, 921, 945, 1227
LguI GCTCTTC 2 cut(s) 621, 1169
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 5 cut(s) 313, 551, 757, 1037, 1199
LweI GCATC 2 cut(s) 577, 903
MaeI CTAG 1 cut(s) 1037
MaeII ACGT 7 cut(s) 234, 444, 696, 844, 934, 987, 1175
MaeIII GTNAC 2 cut(s) 747, 827
MalI GATC 4 cut(s) 851, 923, 947, 1229
MboI GATC 4 cut(s) 849, 921, 945, 1227
MboII GAAGA 7 cut(s) 92, 466, 632, 638, 866, 1156, 1210
MflI RGATCY 1 cut(s) 1227
MhlI GDGCHC 2 cut(s) 1157, 1164
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 4 cut(s) 39, 321, 798, 822
MluNI TGGCCA 1 cut(s) 182
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 2 cut(s) 429, 851
MmeI TCCRAC 1 cut(s) 235
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 810
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 499, 1129
MspCI CTTAAG 1 cut(s) 809
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 7 cut(s) 80, 179, 548, 557, 644, 677, 1193
NarI GGCGCC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 456
NdeII GATC 4 cut(s) 849, 921, 945, 1227
NlaIII CATG 8 cut(s) 37, 130, 216, 460, 525, 746, 1108, 1225
NlaIV GGNNCC 2 cut(s) 115, 756
NmeAIII GCCGAG 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 827
NspI RCATGY 1 cut(s) 37
NspV TTCGAA 1 cut(s) 505
PaeI GCATGC 1 cut(s) 37
PciSI GCTCTTC 2 cut(s) 621, 1169
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 6 cut(s) 97, 262, 502, 689, 783, 1081
PkrI GCNGC 6 cut(s) 328, 541, 772, 1027, 1098, 1189
Ple19I CGATCG 1 cut(s) 852
PleI GAGTC 2 cut(s) 429, 851
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 2 cut(s) 429, 851
Ppu21I YACGTR 4 cut(s) 445, 845, 935, 988
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 115, 756
PspPI GGNCC 3 cut(s) 123, 483, 570
PstI CTGCAG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 1227
PvuI CGATCG 1 cut(s) 852
PvuII CAGCTG 2 cut(s) 499, 1129
RsaI GTAC 6 cut(s) 92, 427, 699, 883, 1117, 1178
RsaNI GTAC 6 cut(s) 91, 426, 698, 882, 1116, 1177
SapI GCTCTTC 2 cut(s) 621, 1169
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 6 cut(s) 327, 540, 771, 1026, 1097, 1188
Sau3AI GATC 4 cut(s) 849, 921, 945, 1227
Sau96I GGNCC 3 cut(s) 123, 483, 570
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 2 cut(s) 429, 851
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 1157, 1164
SfaNI GCATC 2 cut(s) 577, 903
SfcI CTRYAG 2 cut(s) 327, 672
SfoI GGCGCC 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 2 cut(s) 123, 483
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
SnaBI TACGTA 3 cut(s) 445, 935, 988
SphI GCATGC 1 cut(s) 37
Sse9I AATT 4 cut(s) 39, 321, 798, 822
SsiI CCGC 2 cut(s) 773, 1097
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 1037
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 3 cut(s) 456, 925, 1191
TaaI ACNGT 1 cut(s) 881
TaiI ACGT 7 cut(s) 237, 447, 699, 847, 937, 990, 1178
TaqI TCGA 2 cut(s) 505, 852
TasI AATT 4 cut(s) 39, 321, 798, 822
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 1099
TfiI GAWTC 6 cut(s) 97, 262, 502, 689, 783, 1081
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TscAI CASTG 3 cut(s) 67, 168, 1164
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 5 cut(s) 326, 539, 770, 1025, 1187
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 8 cut(s) 143, 201, 466, 501, 639, 702, 1121, 1210
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 3 cut(s) 67, 168, 1164
Vha464I CTTAAG 1 cut(s) 809
VpaK11BI GGWCC 2 cut(s) 123, 483
XceI RCATGY 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XspI CTAG 1 cut(s) 1037
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.