Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

10041040 .. 10045317

Gene Structure 4278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCAGATAGTGTTTGTGGTGTTTACACCCTCCCTCATGTTTGCAAGTGTTGCCAAAACTGTCACATTTGATGACATCATTTCATGGTGGTTTATGATTGTCAATGTGGGACTTACATTTTTGTTTGGAACCATTCTTGGATGGTTAGTGGTAAAGATACTGAAACCAAAGCCTTATCAGGAAGGCCTTGTAATTGCTACATGTTCATCAGCAAACTTGGGAAACCTTCTACTTATAGTTGTGCCAGCAATTTGTCATGAGGATGGGAACCCTTTCGGCGATCATGAAGTTTGTAGCGCAGTTGGACTCTCCTATGTCTCGTTTTCCATGGCGCTTGGTGGTTTCTTCATTTGGACTTATACTTATCAGCTGATAAAGTCCTCATCTGTGAAATTTATAGCGCTTCAAGAAGCAGAAAATGAGACCGTGAAGAGGCCAAACAAGGATTTAGATGCTGATGGAGCAACTCACCTTCTCAAAGGAGGAGATGAGGAGCAGGGCTCTATTGTAGTCTCATCTAAATCTGCGGATCACCCCCCTGCTATAGTACCTCACGAACCAGATGTATCATTCCCCCAAAAAGTATTAGCGTTCTTTAAACAGATTTTACATGAGTTACTGGCACCACCAACTCTAGCTGCATTTATTGGATTTGTCTTTGGGGCAATTCCATGGCTTAAACGCTTGATAATTGGTGACTCCGCCCCCCTCCGAGTGATCCAAGATTCAATTGCACAACTTGGGAATGGAACTATTCCTTGTATCACACTTATTCTTGGAGGCAATCTCATCCAAGGCTTACGAGCATCGACAATCAAAATACCTGTCATCCTTGGAATCATCGTTGCACGATATATTCTACTTCCAGTAATTGGTATTTGGATTGTAAAAGGAGCAGACCAACTAGGGTTTCTCCCACCAGACCCTTTGTTCAAGTTTGTGCTGATGGTTCAATTCACATTGCCACCTGCCATGAACATTGGTACCATAACCCAGCTGTTTGATGTTGCCGAGGCAGAGTGCTCGGTCATCTTCCTGTGGACATACTTGGTCTGTGCCCTAGCACTTACCGTGTGGTCTACAGTCTACATGTGGATCTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

368

Amino Acids

40.18

Weight (kDa)

5.5

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	3 - 359	4.7e-76	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	976
Acc36I	ACCTGC	1 cut(s)	976
Acc65I	GGTACC	1 cut(s)	983
AccB1I	GGYRCC	2 cut(s)	622, 983
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccI	GTMKAC	2 cut(s)	1079, 1086
AciI	CCGC	2 cut(s)	527, 702
AclWI	GGATC	3 cut(s)	537, 712, 1103
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	2 cut(s)	549, 985
AfeI	AGCGCT	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	432, 872
AflIII	ACRYGT	2 cut(s)	200, 1089
AgsI	TTSAA	4 cut(s)	407, 729, 934, 953
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AluBI	AGCT	3 cut(s)	370, 638, 997
AluI	AGCT	3 cut(s)	370, 638, 997
Alw21I	GWGCWC	1 cut(s)	1025
Alw26I	GTCTC	3 cut(s)	322, 416, 517
AlwI	GGATC	3 cut(s)	537, 712, 1103
Aor51HI	AGCGCT	1 cut(s)	402
AoxI	GGCC	2 cut(s)	184, 434
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	983
AspLEI	GCGC	3 cut(s)	299, 334, 403
AsuHPI	GGTGA	3 cut(s)	461, 524, 707
BaeGI	GKGCMC	1 cut(s)	1060
BaeI	ACNNNNGTAYC	2 cut(s)	967, 1000
BanI	GGYRCC	2 cut(s)	622, 983
BanII	GRGCYC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	1025
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	4 cut(s)	135, 257, 452, 940
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BcoDI	GTCTC	3 cut(s)	322, 416, 517
BfaI	CTAG	3 cut(s)	635, 905, 1061
BfmI	CTRYAG	2 cut(s)	543, 1080
BfoI	RGCGCY	2 cut(s)	335, 404
BfuAI	ACCTGC	1 cut(s)	976
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
BmiI	GGNNCC	4 cut(s)	130, 269, 624, 985
BmsI	GCATC	2 cut(s)	442, 815
BplI	GAGNNNNNCTC	4 cut(s)	485, 517, 771, 803
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	5 cut(s)	327, 671, 793, 832, 1011
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 872
Bse1I	ACTGG	2 cut(s)	624, 866
Bse3DI	GCAATG	1 cut(s)	959
BseDI	CCNNGG	5 cut(s)	327, 671, 793, 832, 1011
BseGI	GGATG	4 cut(s)	146, 268, 789, 828
BseLI	CCNNNNNNNGG	2 cut(s)	432, 872
BseMI	GCAATG	1 cut(s)	959
BseNI	ACTGG	2 cut(s)	624, 866
BseRI	GAGGAG	2 cut(s)	498, 506
BseSI	GKGCMC	1 cut(s)	1060
BseXI	GCAGC	1 cut(s)	625
BseYI	CCCAGC	1 cut(s)	993
BshFI	GGCC	2 cut(s)	186, 436
BshNI	GGYRCC	2 cut(s)	622, 983
BsiHKAI	GWGCWC	1 cut(s)	1025
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	432, 872
BsmAI	GTCTC	3 cut(s)	322, 416, 517
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	186, 436
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	3 cut(s)	503, 1025, 1060
Bsp143I	GATC	4 cut(s)	280, 529, 717, 1095
Bsp19I	CCATGG	2 cut(s)	327, 671
BspACI	CCGC	2 cut(s)	527, 702
BspANI	GGCC	2 cut(s)	186, 436
BspHI	TCATGA	2 cut(s)	256, 283
BspLI	GGNNCC	4 cut(s)	130, 269, 624, 985
BspMI	ACCTGC	1 cut(s)	976
BspPI	GGATC	3 cut(s)	537, 712, 1103
BspT107I	GGYRCC	2 cut(s)	622, 983
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	959
BsrI	ACTGG	2 cut(s)	624, 866
BssECI	CCNNGG	5 cut(s)	327, 671, 793, 832, 1011
BssMI	GATC	4 cut(s)	280, 529, 717, 1095
BssT1I	CCWWGG	4 cut(s)	327, 671, 793, 832
Bst4CI	ACNGT	4 cut(s)	61, 427, 1072, 1084
Bst6I	CTCTTC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	246
BstDSI	CCRYGG	2 cut(s)	327, 671
BstF5I	GGATG	4 cut(s)	146, 268, 789, 828
BstH2I	RGCGCY	2 cut(s)	335, 404
BstHHI	GCGC	3 cut(s)	299, 334, 403
BstKTI	GATC	4 cut(s)	283, 532, 720, 1098
BstMAI	GTCTC	3 cut(s)	322, 416, 517
BstMBI	GATC	4 cut(s)	280, 529, 717, 1095
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 461
BstNSI	RCATGY	2 cut(s)	204, 1093
BstSFI	CTRYAG	2 cut(s)	543, 1080
BstSLI	GKGCMC	1 cut(s)	1060
BstV1I	GCAGC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	1095
BstYI	RGATCY	1 cut(s)	1095
BsuRI	GGCC	2 cut(s)	186, 436
BtgI	CCRYGG	2 cut(s)	327, 671
BtsCI	GGATG	4 cut(s)	146, 268, 789, 828
BveI	ACCTGC	1 cut(s)	976
Cac8I	GCNNGC	1 cut(s)	246
CciI	TCATGA	2 cut(s)	256, 283
CfoI	GCGC	3 cut(s)	299, 334, 403
Csp6I	GTAC	2 cut(s)	548, 984
CviJI	RGCY	9 cut(s)	172, 186, 370, 436, 501, 638, 676, 798, 997
CviKI_1	RGCY	9 cut(s)	172, 186, 370, 436, 501, 638, 676, 798, 997
CviQI	GTAC	2 cut(s)	548, 984
DpnI	GATC	4 cut(s)	282, 531, 719, 1097
DpnII	GATC	4 cut(s)	280, 529, 717, 1095
DraI	TTTAAA	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
EciI	GGCGGA	1 cut(s)	691
Eco130I	CCWWGG	4 cut(s)	327, 671, 793, 832
Eco147I	AGGCCT	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	416
Eco47III	AGCGCT	1 cut(s)	402
EcoT14I	CCWWGG	4 cut(s)	327, 671, 793, 832
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	4 cut(s)	327, 671, 793, 832
FaqI	GGGAC	1 cut(s)	123
FblI	GTMKAC	2 cut(s)	1079, 1086
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	4 cut(s)	153, 275, 776, 815
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	3 cut(s)	635, 905, 1061
GlaI	GCGC	3 cut(s)	298, 333, 402
GluI	GCNGC	1 cut(s)	639
GsaI	CCCAGC	1 cut(s)	997
HaeII	RGCGCY	2 cut(s)	335, 404
HaeIII	GGCC	2 cut(s)	186, 436
HhaI	GCGC	3 cut(s)	299, 334, 403
Hin6I	GCGC	3 cut(s)	297, 332, 401
HinP1I	GCGC	3 cut(s)	297, 332, 401
HinfI	GANTC	4 cut(s)	306, 698, 725, 837
HphI	GGTGA	3 cut(s)	461, 524, 707
Hpy166II	GTNNAC	4 cut(s)	24, 1041, 1080, 1087
Hpy188I	TCNGA	1 cut(s)	713
Hpy188III	TCNNGA	6 cut(s)	179, 257, 284, 407, 554, 1104
Hpy8I	GTNNAC	4 cut(s)	24, 1041, 1080, 1087
HpyAV	CCTTC	3 cut(s)	176, 236, 482
HpyCH4III	ACNGT	4 cut(s)	61, 427, 1072, 1084
HpyCH4V	TGCA	5 cut(s)	4, 44, 641, 734, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 461
HspAI	GCGC	3 cut(s)	297, 332, 401
KpnI	GGTACC	1 cut(s)	987
Kzo9I	GATC	4 cut(s)	280, 529, 717, 1095
LmnI	GCTCC	3 cut(s)	461, 493, 893
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	2 cut(s)	442, 815
MaeI	CTAG	3 cut(s)	635, 905, 1061
MaeIII	GTNAC	3 cut(s)	61, 615, 695
MalI	GATC	4 cut(s)	282, 531, 719, 1097
MboI	GATC	4 cut(s)	280, 529, 717, 1095
MboII	GAAGA	3 cut(s)	337, 442, 1024
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	1 cut(s)	1095
MhlI	GDGCHC	3 cut(s)	503, 1025, 1060
MluCI	AATT	8 cut(s)	192, 249, 392, 666, 690, 729, 870, 953
MlyI	GAGTC	2 cut(s)	300, 692
MmeI	TCCRAC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	2 cut(s)	597, 678
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	370, 997
MunI	CAATTG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	50, 461
NcoI	CCATGG	2 cut(s)	327, 671
NdeII	GATC	4 cut(s)	280, 529, 717, 1095
NlaIV	GGNNCC	4 cut(s)	130, 269, 624, 985
NmeAIII	GCCGAG	1 cut(s)	1036
NmuCI	GTSAC	2 cut(s)	61, 695
NspI	RCATGY	2 cut(s)	204, 1093
PagI	TCATGA	2 cut(s)	256, 283
PaqCI	CACCTGC	1 cut(s)	976
PceI	AGGCCT	1 cut(s)	186
PciI	ACATGT	2 cut(s)	200, 1089
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	725, 837
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	2 cut(s)	300, 692
PpsI	GAGTC	2 cut(s)	300, 692
PscI	ACATGT	2 cut(s)	200, 1089
PspFI	CCCAGC	1 cut(s)	993
PspN4I	GGNNCC	4 cut(s)	130, 269, 624, 985
PsuI	RGATCY	1 cut(s)	1095
PvuII	CAGCTG	2 cut(s)	370, 997
RsaI	GTAC	2 cut(s)	549, 985
RsaNI	GTAC	2 cut(s)	548, 984
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	597, 678
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	4 cut(s)	280, 529, 717, 1095
SchI	GAGTC	2 cut(s)	300, 692
SduI	GDGCHC	3 cut(s)	503, 1025, 1060
SetI	ASST	8 cut(s)	228, 372, 474, 553, 640, 826, 970, 999
SfaNI	GCATC	2 cut(s)	442, 815
SfcI	CTRYAG	2 cut(s)	543, 1080
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	8 cut(s)	192, 249, 392, 666, 690, 729, 870, 953
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	2 cut(s)	527, 702
SspMI	CTAG	3 cut(s)	635, 905, 1061
StuI	AGGCCT	1 cut(s)	186
StyI	CCWWGG	4 cut(s)	327, 671, 793, 832
TaaI	ACNGT	4 cut(s)	61, 427, 1072, 1084
TaqI	TCGA	1 cut(s)	809
TaqII	GACCGA	1 cut(s)	1015
TasI	AATT	8 cut(s)	192, 249, 392, 666, 690, 729, 870, 953
TfiI	GAWTC	2 cut(s)	725, 837
Tru1I	TTAA	2 cut(s)	597, 678
Tru9I	TTAA	2 cut(s)	597, 678
TseFI	GTSAC	2 cut(s)	61, 695
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	2 cut(s)	61, 695
TspDTI	ATGAA	5 cut(s)	72, 195, 300, 337, 989
Van91I	CCANNNNNTGG	1 cut(s)	872
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	2 cut(s)	204, 1093
XmiI	GTMKAC	2 cut(s)	1079, 1086
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	635, 905, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.