Transporter
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980 |
| fragaria_vesca | FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 |
| malus_domestica | MD02G1113800.v1.1 MD15G1228900.v1.1 |
| prunus_persica | Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 |
| pyrus_communis | pycom15g20410 |
| rosa_chinensis | RchiOBHm_Chr2g0096951 |
| rosa_laevigata | RLG00000016686 |
| rosa_multiflora | Rmu_sc0001651.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00145130 |
| rosa_rugosa | Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300 |
| rosa_samantha | Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200 |
| rosa_wichuraiana | Rw2G008520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1015 |
| Acc36I | ACCTGC | 1 cut(s) | 1015 |
| AccB1I | GGYRCC | 1 cut(s) | 757 |
| AccI | GTMKAC | 1 cut(s) | 111 |
| AciI | CCGC | 2 cut(s) | 121, 847 |
| AcoI | YGGCCR | 1 cut(s) | 180 |
| AcsI | RAATTY | 1 cut(s) | 954 |
| AcuI | CTGAAG | 1 cut(s) | 495 |
| AcyI | GRCGYC | 1 cut(s) | 114 |
| AfaI | GTAC | 2 cut(s) | 66, 702 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 163, 322, 613, 846, 847 |
| AflII | CTTAAG | 1 cut(s) | 812 |
| AgsI | TTSAA | 3 cut(s) | 200, 213, 536 |
| AjnI | CCWGG | 1 cut(s) | 315 |
| AluBI | AGCT | 7 cut(s) | 74, 499, 530, 551, 677, 773, 1036 |
| AluI | AGCT | 7 cut(s) | 74, 499, 530, 551, 677, 773, 1036 |
| Alw21I | GWGCWC | 1 cut(s) | 1064 |
| AoxI | GGCC | 3 cut(s) | 180, 313, 558 |
| ApeKI | GCWGC | 4 cut(s) | 326, 548, 773, 1094 |
| ApoI | RAATTY | 1 cut(s) | 954 |
| AspLEI | GCGC | 3 cut(s) | 463, 839, 1105 |
| AspS9I | GGNCC | 1 cut(s) | 123 |
| AsuC2I | CCSGG | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 3 cut(s) | 145, 842, 862 |
| AvaII | GGWCC | 1 cut(s) | 123 |
| BalI | TGGCCA | 1 cut(s) | 182 |
| BanI | GGYRCC | 1 cut(s) | 757 |
| BbsI | GAAGAC | 2 cut(s) | 207, 864 |
| Bbv12I | GWGCWC | 1 cut(s) | 1064 |
| BbvCI | CCTCAGC | 3 cut(s) | 552, 591, 1050 |
| BbvI | GCAGC | 4 cut(s) | 313, 560, 760, 1106 |
| BccI | CCATC | 3 cut(s) | 264, 386, 896 |
| BciT130I | CCWGG | 1 cut(s) | 317 |
| BciVI | GTATCC | 1 cut(s) | 255 |
| BclI | TGATCA | 1 cut(s) | 975 |
| BcnI | CCSGG | 1 cut(s) | 118 |
| BfaI | CTAG | 1 cut(s) | 663 |
| BfmI | CTRYAG | 3 cut(s) | 108, 639, 678 |
| BfoI | RGCGCY | 3 cut(s) | 464, 840, 1106 |
| BfrI | CTTAAG | 1 cut(s) | 812 |
| BfuAI | ACCTGC | 1 cut(s) | 1015 |
| BfuI | GTATCC | 1 cut(s) | 255 |
| BisI | GCNGC | 4 cut(s) | 327, 549, 774, 1095 |
| BlsI | GCNGC | 4 cut(s) | 328, 550, 775, 1096 |
| Bme1390I | CCNGG | 2 cut(s) | 118, 317 |
| Bme18I | GGWCC | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 1 cut(s) | 123 |
| BmiI | GGNNCC | 4 cut(s) | 398, 759, 886, 1024 |
| BmrFI | CCNGG | 2 cut(s) | 118, 317 |
| BmrI | ACTGGG | 1 cut(s) | 77 |
| BmuI | ACTGGG | 1 cut(s) | 77 |
| BpiI | GAAGAC | 2 cut(s) | 207, 864 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 545, 577, 906, 938 |
| Bpu10I | CCTNAGC | 3 cut(s) | 552, 591, 1050 |
| BpuEI | CTTGAG | 1 cut(s) | 596 |
| BpuMI | CCSGG | 1 cut(s) | 118 |
| BsaAI | YACGTR | 1 cut(s) | 991 |
| BsaHI | GRCGYC | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 3 cut(s) | 456, 928, 1098 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 163, 322, 613, 846, 847 |
| Bse1I | ACTGG | 3 cut(s) | 72, 168, 759 |
| BseBI | CCWGG | 1 cut(s) | 317 |
| BseDI | CCNNGG | 3 cut(s) | 456, 928, 1098 |
| BseGI | GGATG | 4 cut(s) | 275, 397, 888, 924 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 163, 322, 613, 846, 847 |
| BseMII | CTCAG | 5 cut(s) | 78, 543, 582, 1041, 1077 |
| BseNI | ACTGG | 3 cut(s) | 72, 168, 759 |
| BseRI | GAGGAG | 1 cut(s) | 569 |
| BseXI | GCAGC | 4 cut(s) | 313, 560, 760, 1106 |
| BseYI | CCCAGC | 1 cut(s) | 1032 |
| BshFI | GGCC | 3 cut(s) | 182, 315, 560 |
| BshNI | GGYRCC | 1 cut(s) | 757 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1064 |
| BsiSI | CCGG | 1 cut(s) | 118 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 163, 322, 613, 846, 847 |
| BsnI | GGCC | 3 cut(s) | 182, 315, 560 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1064 |
| Bsp143I | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| Bsp19I | CCATGG | 1 cut(s) | 456 |
| BspACI | CCGC | 2 cut(s) | 121, 847 |
| BspANI | GGCC | 3 cut(s) | 182, 315, 560 |
| BspCNI | CTCAG | 5 cut(s) | 79, 544, 583, 1042, 1076 |
| BspLI | GGNNCC | 4 cut(s) | 398, 759, 886, 1024 |
| BspMI | ACCTGC | 1 cut(s) | 1015 |
| BspQI | GCTCTTC | 2 cut(s) | 537, 621 |
| BspT107I | GGYRCC | 1 cut(s) | 757 |
| BspTI | CTTAAG | 1 cut(s) | 812 |
| BsrI | ACTGG | 3 cut(s) | 72, 168, 759 |
| BssECI | CCNNGG | 3 cut(s) | 456, 928, 1098 |
| BssMI | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| BssNI | GRCGYC | 1 cut(s) | 114 |
| BssT1I | CCWWGG | 3 cut(s) | 456, 928, 1098 |
| Bst2UI | CCWGG | 1 cut(s) | 317 |
| Bst4CI | ACNGT | 4 cut(s) | 491, 578, 769, 1123 |
| Bst6I | CTCTTC | 3 cut(s) | 381, 537, 621 |
| BstACI | GRCGYC | 1 cut(s) | 114 |
| BstAFI | CTTAAG | 1 cut(s) | 812 |
| BstBAI | YACGTR | 1 cut(s) | 991 |
| BstDEI | CTNAG | 5 cut(s) | 87, 552, 591, 1050, 1063 |
| BstDSI | CCRYGG | 1 cut(s) | 456 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 611 |
| BstF5I | GGATG | 4 cut(s) | 275, 397, 888, 924 |
| BstH2I | RGCGCY | 3 cut(s) | 464, 840, 1106 |
| BstHHI | GCGC | 3 cut(s) | 463, 839, 1105 |
| BstKTI | GATC | 6 cut(s) | 228, 412, 855, 951, 978, 1071 |
| BstMBI | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 80, 179, 536, 545, 557, 683, 1100 |
| BstNI | CCWGG | 1 cut(s) | 317 |
| BstNSI | RCATGY | 1 cut(s) | 333 |
| BstSCI | CCNGG | 2 cut(s) | 116, 315 |
| BstSFI | CTRYAG | 3 cut(s) | 108, 639, 678 |
| BstSNI | TACGTA | 1 cut(s) | 991 |
| BstV1I | GCAGC | 4 cut(s) | 313, 560, 760, 1106 |
| BstV2I | GAAGAC | 2 cut(s) | 207, 864 |
| BsuI | GTATCC | 1 cut(s) | 255 |
| BsuRI | GGCC | 3 cut(s) | 182, 315, 560 |
| BtgI | CCRYGG | 1 cut(s) | 456 |
| BtgZI | GCGATG | 1 cut(s) | 530 |
| BtsCI | GGATG | 4 cut(s) | 275, 397, 888, 924 |
| BtsIMutI | CAGTG | 4 cut(s) | 67, 161, 583, 1071 |
| BveI | ACCTGC | 1 cut(s) | 1015 |
| CfoI | GCGC | 3 cut(s) | 463, 839, 1105 |
| Cfr13I | GGNCC | 1 cut(s) | 123 |
| CseI | GACGC | 2 cut(s) | 122, 596 |
| Csp6I | GTAC | 2 cut(s) | 65, 701 |
| CviAII | CATG | 7 cut(s) | 79, 127, 330, 457, 746, 1012, 1027 |
| CviQI | GTAC | 2 cut(s) | 65, 701 |
| DdeI | CTNAG | 5 cut(s) | 87, 552, 591, 1050, 1063 |
| DpnI | GATC | 6 cut(s) | 227, 411, 854, 950, 977, 1070 |
| DpnII | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| EaeI | YGGCCR | 1 cut(s) | 180 |
| Eam1104I | CTCTTC | 3 cut(s) | 381, 537, 621 |
| EarI | CTCTTC | 3 cut(s) | 381, 537, 621 |
| Eco105I | TACGTA | 1 cut(s) | 991 |
| Eco130I | CCWWGG | 3 cut(s) | 456, 928, 1098 |
| Eco147I | AGGCCT | 2 cut(s) | 315, 560 |
| Eco47I | GGWCC | 1 cut(s) | 123 |
| Eco57I | CTGAAG | 1 cut(s) | 495 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 611 |
| EcoRII | CCWGG | 1 cut(s) | 315 |
| EcoT14I | CCWWGG | 3 cut(s) | 456, 928, 1098 |
| ErhI | CCWWGG | 3 cut(s) | 456, 928, 1098 |
| FaeI | CATG | 7 cut(s) | 82, 130, 333, 460, 749, 1015, 1030 |
| FatI | CATG | 7 cut(s) | 78, 126, 329, 456, 745, 1011, 1026 |
| FauI | CCCGC | 1 cut(s) | 840 |
| FauNDI | CATATG | 1 cut(s) | 442 |
| FbaI | TGATCA | 1 cut(s) | 975 |
| FblI | GTMKAC | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 4 cut(s) | 327, 549, 774, 1095 |
| FokI | GGATG | 4 cut(s) | 282, 404, 875, 911 |
| Fsp4HI | GCNGC | 4 cut(s) | 327, 549, 774, 1095 |
| FspBI | CTAG | 1 cut(s) | 663 |
| GlaI | GCGC | 3 cut(s) | 462, 838, 1104 |
| GluI | GCNGC | 4 cut(s) | 327, 549, 774, 1095 |
| GsaI | CCCAGC | 1 cut(s) | 1036 |
| HaeII | RGCGCY | 3 cut(s) | 464, 840, 1106 |
| HaeIII | GGCC | 3 cut(s) | 182, 315, 560 |
| HapII | CCGG | 1 cut(s) | 118 |
| HgaI | GACGC | 2 cut(s) | 122, 596 |
| HhaI | GCGC | 3 cut(s) | 463, 839, 1105 |
| Hin1I | GRCGYC | 1 cut(s) | 114 |
| Hin1II | CATG | 7 cut(s) | 82, 130, 333, 460, 749, 1015, 1030 |
| Hin6I | GCGC | 3 cut(s) | 461, 837, 1103 |
| HinP1I | GCGC | 3 cut(s) | 461, 837, 1103 |
| HincII | GTYRAC | 1 cut(s) | 1119 |
| HindII | GTYRAC | 1 cut(s) | 1119 |
| HinfI | GANTC | 5 cut(s) | 97, 435, 568, 692, 860 |
| HpaII | CCGG | 1 cut(s) | 118 |
| HphI | GGTGA | 3 cut(s) | 145, 842, 862 |
| Hpy166II | GTNNAC | 6 cut(s) | 65, 112, 232, 935, 1080, 1119 |
| Hpy188I | TCNGA | 2 cut(s) | 293, 697 |
| Hpy188III | TCNNGA | 5 cut(s) | 10, 308, 481, 663, 1143 |
| Hpy8I | GTNNAC | 6 cut(s) | 65, 112, 232, 935, 1080, 1119 |
| Hpy99I | CGWCG | 1 cut(s) | 949 |
| HpyAV | CCTTC | 3 cut(s) | 305, 365, 617 |
| HpyCH4III | ACNGT | 4 cut(s) | 491, 578, 769, 1123 |
| HpyCH4IV | ACGT | 3 cut(s) | 234, 699, 990 |
| HpyCH4V | TGCA | 4 cut(s) | 173, 329, 377, 1094 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 80, 179, 536, 545, 557, 683, 1100 |
| HpyF3I | CTNAG | 5 cut(s) | 87, 552, 591, 1050, 1063 |
| HpySE526I | ACGT | 3 cut(s) | 234, 699, 990 |
| Hsp92I | GRCGYC | 1 cut(s) | 114 |
| Hsp92II | CATG | 7 cut(s) | 82, 130, 333, 460, 749, 1015, 1030 |
| HspAI | GCGC | 3 cut(s) | 461, 837, 1103 |
| Ksp22I | TGATCA | 1 cut(s) | 975 |
| Kzo9I | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| LguI | GCTCTTC | 2 cut(s) | 537, 621 |
| LmnI | GCTCC | 1 cut(s) | 71 |
| Lsp1109I | GCAGC | 4 cut(s) | 313, 560, 760, 1106 |
| MaeI | CTAG | 1 cut(s) | 663 |
| MaeII | ACGT | 3 cut(s) | 234, 699, 990 |
| MaeIII | GTNAC | 3 cut(s) | 491, 750, 830 |
| MalI | GATC | 6 cut(s) | 227, 411, 854, 950, 977, 1070 |
| MboI | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| MfeI | CAATTG | 1 cut(s) | 540 |
| MhlI | GDGCHC | 1 cut(s) | 1064 |
| MlsI | TGGCCA | 1 cut(s) | 182 |
| MluCI | AATT | 4 cut(s) | 540, 801, 825, 954 |
| MluNI | TGGCCA | 1 cut(s) | 182 |
| MlyI | GAGTC | 2 cut(s) | 429, 854 |
| MmeI | TCCRAC | 1 cut(s) | 412 |
| Mox20I | TGGCCA | 1 cut(s) | 182 |
| MscI | TGGCCA | 1 cut(s) | 182 |
| MseI | TTAA | 2 cut(s) | 732, 813 |
| MslI | CAYNNNNRTG | 1 cut(s) | 971 |
| Msp20I | TGGCCA | 1 cut(s) | 182 |
| MspA1I | CMGCKG | 3 cut(s) | 499, 551, 1036 |
| MspCI | CTTAAG | 1 cut(s) | 812 |
| MspI | CCGG | 1 cut(s) | 118 |
| MspR9I | CCNGG | 2 cut(s) | 118, 317 |
| MunI | CAATTG | 1 cut(s) | 540 |
| MvaI | CCWGG | 1 cut(s) | 317 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 80, 179, 536, 545, 557, 683, 1100 |
| NciI | CCSGG | 1 cut(s) | 118 |
| NcoI | CCATGG | 1 cut(s) | 456 |
| NdeI | CATATG | 1 cut(s) | 442 |
| NdeII | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| NlaIII | CATG | 7 cut(s) | 82, 130, 333, 460, 749, 1015, 1030 |
| NlaIV | GGNNCC | 4 cut(s) | 398, 759, 886, 1024 |
| NmuCI | GTSAC | 1 cut(s) | 830 |
| NspI | RCATGY | 1 cut(s) | 333 |
| PaqCI | CACCTGC | 1 cut(s) | 1015 |
| PceI | AGGCCT | 2 cut(s) | 315, 560 |
| PciSI | GCTCTTC | 2 cut(s) | 537, 621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 773 |
| PfeI | GAWTC | 3 cut(s) | 97, 568, 692 |
| PkrI | GCNGC | 4 cut(s) | 328, 550, 775, 1096 |
| PleI | GAGTC | 2 cut(s) | 429, 854 |
| PpsI | GAGTC | 2 cut(s) | 429, 854 |
| Ppu21I | YACGTR | 1 cut(s) | 991 |
| Psp6I | CCWGG | 1 cut(s) | 315 |
| PspFI | CCCAGC | 1 cut(s) | 1032 |
| PspGI | CCWGG | 1 cut(s) | 315 |
| PspN4I | GGNNCC | 4 cut(s) | 398, 759, 886, 1024 |
| PspPI | GGNCC | 1 cut(s) | 123 |
| PvuII | CAGCTG | 3 cut(s) | 499, 551, 1036 |
| RsaI | GTAC | 2 cut(s) | 66, 702 |
| RsaNI | GTAC | 2 cut(s) | 65, 701 |
| RseI | CAYNNNNRTG | 1 cut(s) | 971 |
| SapI | GCTCTTC | 2 cut(s) | 537, 621 |
| SaqAI | TTAA | 2 cut(s) | 732, 813 |
| SatI | GCNGC | 4 cut(s) | 327, 549, 774, 1095 |
| Sau3AI | GATC | 6 cut(s) | 225, 409, 852, 948, 975, 1068 |
| Sau96I | GGNCC | 1 cut(s) | 123 |
| SchI | GAGTC | 2 cut(s) | 429, 854 |
| ScrFI | CCNGG | 2 cut(s) | 118, 317 |
| SduI | GDGCHC | 1 cut(s) | 1064 |
| SfcI | CTRYAG | 3 cut(s) | 108, 639, 678 |
| SinI | GGWCC | 1 cut(s) | 123 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 971 |
| SmlI | CTYRAG | 2 cut(s) | 611, 812 |
| SmoI | CTYRAG | 2 cut(s) | 611, 812 |
| SnaBI | TACGTA | 1 cut(s) | 991 |
| Sse9I | AATT | 4 cut(s) | 540, 801, 825, 954 |
| SseBI | AGGCCT | 2 cut(s) | 315, 560 |
| SsiI | CCGC | 2 cut(s) | 121, 847 |
| SspI | AATATT | 1 cut(s) | 1018 |
| SspMI | CTAG | 1 cut(s) | 663 |
| StuI | AGGCCT | 2 cut(s) | 315, 560 |
| StyD4I | CCNGG | 2 cut(s) | 116, 315 |
| StyI | CCWWGG | 3 cut(s) | 456, 928, 1098 |
| TaaI | ACNGT | 4 cut(s) | 491, 578, 769, 1123 |
| TaiI | ACGT | 3 cut(s) | 237, 702, 993 |
| TaqI | TCGA | 2 cut(s) | 855, 944 |
| TasI | AATT | 4 cut(s) | 540, 801, 825, 954 |
| TatI | WGTACW | 1 cut(s) | 64 |
| TfiI | GAWTC | 3 cut(s) | 97, 568, 692 |
| Tru1I | TTAA | 2 cut(s) | 732, 813 |
| Tru9I | TTAA | 2 cut(s) | 732, 813 |
| TscAI | CASTG | 4 cut(s) | 67, 168, 583, 1071 |
| TseFI | GTSAC | 1 cut(s) | 830 |
| TseI | GCWGC | 4 cut(s) | 326, 548, 773, 1094 |
| Tsp45I | GTSAC | 1 cut(s) | 830 |
| TspDTI | ATGAA | 9 cut(s) | 67, 143, 324, 466, 533, 639, 639, 705, 1028 |
| TspRI | CASTG | 4 cut(s) | 67, 168, 583, 1071 |
| Vha464I | CTTAAG | 1 cut(s) | 812 |
| VpaK11BI | GGWCC | 1 cut(s) | 123 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 611 |
| XapI | RAATTY | 1 cut(s) | 954 |
| XbaI | TCTAGA | 1 cut(s) | 662 |
| XceI | RCATGY | 1 cut(s) | 333 |
| XmiI | GTMKAC | 1 cut(s) | 111 |
| XspI | CTAG | 1 cut(s) | 663 |