Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

5529597 .. 5534578

Gene Structure 4982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10180.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGGTTTCTGGACTCTGTTTGAGGTGGCATCTATGCCAGTTCTGCAAGTTTTGATAATCAGTTTGTTGGGAGCTTACATGGCTACTGAGTATTGCAATCTTCTTCCTTTGGGTGCCAGAAGATCCTTGAATAAGATTGTGTTTGTGGTGTTCACACCTTCCCTCATGTTTGCAAGTGTTGCCGAGACTGTCACATTTGATGACATCATTTCATGGTGGTTCATGATTGTCAATGTGGCACTTACATTTTTTATTGGATCCATTCTTGGATGGTTAGTGGTAAAGATACTGAAACCAAAGCCTTATCAGGAAGGCGTTGTAATTGCTTCATGTTCATCAGCAAACTTGGGAAACCTTCTGCTTATACTTGTGCCTGCAACCTGTCATGAGGCCGGAAACCCCTTCGGCGATCATGAAGTTTGTAGTGCAGTTGGACTCGCATATGCCTCGTTTTCCATGGCGCTTGGTGGTTTCTTCATTTGGACTTATACGTATCAGCTGATAAGATCCTCATCTGTGAAATTTAAAGCACTTCAAGAAGCTGAAAAGGTGGCCATGAAGAGGCCGAATAAGGACTTGGATGCTGATGGGGCAACTCACCTTCTCAAAGAAGGAGATGAAGAGCAGGGCTCTATTGTAGTCTCATCTAAATCCGCAGATCACCCCCCTGCTATAGTGACTCATGAACCAGATGTATCATTTGCCCGAACAATACTAGCATTTTTTCAACAGATTTTACATGAGTTAATGGCACCACCAACTGTAGCTGCAATCATTGGATTTGTCTTCGGGGCAGTTCCATGGCTTAAAAGCTTGATAATTGGTGACAGCGCCCCCCTCCGAGTGATCCAAGACTCAGTTACACAACTCGGGAATGGAACTATTCCTTGTATCACACTTATTCTTGGAGGCAATCTCATGCAAGGCTTAAGAGCATCGACAATCAAAATACCTGTCCTCCTTGCAATCATCCTTGTTCGATACATTCTACTTCCAGTAATTGGAATTTGGATTGTAAAAGGAGCAGACCAACTAGGGTTTCTCCCACCAGACCCTTTATTCAAGTTTGTGCTGATGGTTCAGTTCACATTGCCACCTGCTATGAACATTGGTACCATAACCCAGCTGTTTGACGTCGCCGAGGCAGAGTGCTCAGTCATCTTCCTGTGGACATACTTGGTCTGTGCCCTAGCACTCACTGTGTGGTCTACTGTCTACATGTGGATCTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

412

Amino Acids

44.89

Weight (kDa)

5.53

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 402	2.4e-86	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1105
AatII	GACGTC	1 cut(s)	1137
Acc36I	ACCTGC	1 cut(s)	1105
Acc65I	GGTACC	1 cut(s)	1112
AccB1I	GGYRCC	3 cut(s)	113, 751, 1112
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccI	GTMKAC	2 cut(s)	1208, 1215
AciI	CCGC	1 cut(s)	654
AclWI	GGATC	6 cut(s)	117, 252, 265, 501, 841, 1232
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	521, 1005
AcyI	GRCGYC	1 cut(s)	1134
AdeI	CACNNNGTG	1 cut(s)	1203
AfaI	GTAC	1 cut(s)	1114
AfiI	CCNNNNNNNGG	2 cut(s)	561, 1001
AflII	CTTAAG	1 cut(s)	928
AflIII	ACRYGT	1 cut(s)	1218
AgsI	TTSAA	4 cut(s)	130, 536, 728, 1063
AjuI	GAANNNNNNNTTGG	4 cut(s)	560, 592, 1023, 1055
AluBI	AGCT	6 cut(s)	74, 499, 542, 767, 813, 1126
AluI	AGCT	6 cut(s)	74, 499, 542, 767, 813, 1126
Alw21I	GWGCWC	1 cut(s)	1154
Alw26I	GTCTC	2 cut(s)	179, 646
AlwI	GGATC	6 cut(s)	117, 252, 265, 501, 841, 1232
Ama87I	CYCGRG	1 cut(s)	869
AoxI	GGCC	3 cut(s)	390, 552, 563
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	2 cut(s)	521, 1005
ArsI	GACNNNNNNTTYG	2 cut(s)	939, 971
Asp718I	GGTACC	1 cut(s)	1112
AspLEI	GCGC	2 cut(s)	463, 833
AsuHPI	GGTGA	3 cut(s)	590, 653, 836
AvaI	CYCGRG	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	1189
BaeI	ACNNNNGTAYC	2 cut(s)	1096, 1129
BalI	TGGCCA	1 cut(s)	554
BamHI	GGATCC	1 cut(s)	257
BanI	GGYRCC	3 cut(s)	113, 751, 1112
BanII	GRGCYC	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	778
Bbv12I	GWGCWC	1 cut(s)	1154
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	3 cut(s)	264, 581, 1069
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BcoDI	GTCTC	2 cut(s)	179, 646
BfaI	CTAG	3 cut(s)	716, 1034, 1190
BfmI	CTRYAG	2 cut(s)	672, 762
BfoI	RGCGCY	2 cut(s)	464, 834
BfrI	CTTAAG	1 cut(s)	928
BfuAI	ACCTGC	1 cut(s)	1105
BisI	GCNGC	1 cut(s)	768
BlsI	GCNGC	1 cut(s)	769
BmeT110I	CYCGRG	1 cut(s)	869
BmiI	GGNNCC	4 cut(s)	115, 259, 753, 1114
BmsI	GCATC	3 cut(s)	38, 571, 944
BpiI	GAAGAC	1 cut(s)	778
BplI	GAGNNNNNCTC	4 cut(s)	614, 646, 900, 932
BsaAI	YACGTR	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	511
BsaHI	GRCGYC	1 cut(s)	1134
BsaJI	CCNNGG	3 cut(s)	456, 800, 1140
BsaXI	ACNNNNNCTCC	2 cut(s)	942, 972
Bsc4I	CCNNNNNNNGG	2 cut(s)	561, 1001
Bse1I	ACTGG	2 cut(s)	38, 995
Bse3DI	GCAATG	1 cut(s)	1088
Bse8I	GATNNNNATC	1 cut(s)	511
BseDI	CCNNGG	3 cut(s)	456, 800, 1140
BseGI	GGATG	3 cut(s)	275, 586, 969
BseJI	GATNNNNATC	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	561, 1001
BseMI	GCAATG	1 cut(s)	1088
BseMII	CTCAG	3 cut(s)	78, 870, 1167
BseNI	ACTGG	2 cut(s)	38, 995
BseSI	GKGCMC	1 cut(s)	1189
BseXI	GCAGC	1 cut(s)	754
BseYI	CCCAGC	1 cut(s)	1122
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	3 cut(s)	392, 554, 565
BshNI	GGYRCC	3 cut(s)	113, 751, 1112
BsiHKAI	GWGCWC	1 cut(s)	1154
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	561, 1001
BsmAI	GTCTC	2 cut(s)	179, 646
BsnI	GGCC	3 cut(s)	392, 554, 565
BsoBI	CYCGRG	1 cut(s)	869
Bsp1286I	GDGCHC	3 cut(s)	632, 1154, 1189
Bsp143I	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
Bsp19I	CCATGG	2 cut(s)	456, 800
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	3 cut(s)	392, 554, 565
BspCNI	CTCAG	3 cut(s)	79, 869, 1166
BspHI	TCATGA	4 cut(s)	222, 385, 412, 682
BspLI	GGNNCC	4 cut(s)	115, 259, 753, 1114
BspMI	ACCTGC	1 cut(s)	1105
BspPI	GGATC	6 cut(s)	117, 252, 265, 501, 841, 1232
BspQI	GCTCTTC	1 cut(s)	615
BspT107I	GGYRCC	3 cut(s)	113, 751, 1112
BspTI	CTTAAG	1 cut(s)	928
BsrDI	GCAATG	1 cut(s)	1088
BsrI	ACTGG	2 cut(s)	38, 995
BssECI	CCNNGG	3 cut(s)	456, 800, 1140
BssMI	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
BssNI	GRCGYC	1 cut(s)	1134
BssT1I	CCWWGG	2 cut(s)	456, 800
Bst4CI	ACNGT	4 cut(s)	190, 763, 1201, 1213
Bst6I	CTCTTC	2 cut(s)	554, 615
BstACI	GRCGYC	1 cut(s)	1134
BstAFI	CTTAAG	1 cut(s)	928
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	87, 856, 1153
BstDSI	CCRYGG	2 cut(s)	456, 800
BstF5I	GGATG	3 cut(s)	275, 586, 969
BstH2I	RGCGCY	2 cut(s)	464, 834
BstHHI	GCGC	2 cut(s)	463, 833
BstKTI	GATC	7 cut(s)	125, 260, 412, 509, 661, 849, 1227
BstMAI	GTCTC	2 cut(s)	179, 646
BstMBI	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 80, 179, 590
BstNSI	RCATGY	1 cut(s)	1222
BstSFI	CTRYAG	2 cut(s)	672, 762
BstSLI	GKGCMC	1 cut(s)	1189
BstSNI	TACGTA	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	754
BstV2I	GAAGAC	1 cut(s)	778
BstX2I	RGATCY	4 cut(s)	122, 257, 506, 1224
BstYI	RGATCY	4 cut(s)	122, 257, 506, 1224
BsuRI	GGCC	3 cut(s)	392, 554, 565
BtgI	CCRYGG	2 cut(s)	456, 800
BtsCI	GGATG	3 cut(s)	275, 586, 969
BtsIMutI	CAGTG	1 cut(s)	1197
BveI	ACCTGC	1 cut(s)	1105
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	4 cut(s)	222, 385, 412, 682
CfoI	GCGC	2 cut(s)	463, 833
Csp6I	GTAC	1 cut(s)	1113
CviQI	GTAC	1 cut(s)	1113
DdeI	CTNAG	3 cut(s)	87, 856, 1153
DpnI	GATC	7 cut(s)	124, 259, 411, 508, 660, 848, 1226
DpnII	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
DraI	TTTAAA	1 cut(s)	526
DraIII	CACNNNGTG	1 cut(s)	1203
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	554, 615
EarI	CTCTTC	2 cut(s)	554, 615
Eco105I	TACGTA	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	456, 800
Eco24I	GRGCYC	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	869
EcoT14I	CCWWGG	2 cut(s)	456, 800
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	2 cut(s)	456, 800
FauNDI	CATATG	1 cut(s)	442
FblI	GTMKAC	2 cut(s)	1208, 1215
Fnu4HI	GCNGC	1 cut(s)	768
FokI	GGATG	3 cut(s)	282, 593, 956
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	768
FspBI	CTAG	3 cut(s)	716, 1034, 1190
GlaI	GCGC	2 cut(s)	462, 832
GluI	GCNGC	1 cut(s)	768
GsaI	CCCAGC	1 cut(s)	1126
HaeII	RGCGCY	2 cut(s)	464, 834
HaeIII	GGCC	3 cut(s)	392, 554, 565
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	2 cut(s)	463, 833
Hin1I	GRCGYC	1 cut(s)	1134
Hin6I	GCGC	2 cut(s)	461, 831
HinP1I	GCGC	2 cut(s)	461, 831
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	4 cut(s)	13, 435, 679, 854
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	590, 653, 836
Hpy166II	GTNNAC	5 cut(s)	153, 1086, 1170, 1209, 1216
Hpy188I	TCNGA	1 cut(s)	842
Hpy188III	TCNNGA	9 cut(s)	10, 223, 308, 386, 413, 536, 683, 871, 1233
Hpy8I	GTNNAC	5 cut(s)	153, 1086, 1170, 1209, 1216
Hpy99I	CGWCG	1 cut(s)	1139
HpyAV	CCTTC	6 cut(s)	168, 305, 365, 412, 605, 611
HpyCH4III	ACNGT	4 cut(s)	190, 763, 1201, 1213
HpyCH4IV	ACGT	2 cut(s)	491, 1134
HpyCH4V	TGCA	8 cut(s)	46, 96, 173, 377, 428, 770, 922, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 80, 179, 590
HpyF3I	CTNAG	3 cut(s)	87, 856, 1153
HpySE526I	ACGT	2 cut(s)	491, 1134
Hsp92I	GRCGYC	1 cut(s)	1134
HspAI	GCGC	2 cut(s)	461, 831
KpnI	GGTACC	1 cut(s)	1116
Kzo9I	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	2 cut(s)	71, 1022
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	3 cut(s)	38, 571, 944
MaeI	CTAG	3 cut(s)	716, 1034, 1190
MaeII	ACGT	2 cut(s)	491, 1134
MaeIII	GTNAC	4 cut(s)	190, 676, 824, 859
MalI	GATC	7 cut(s)	124, 259, 411, 508, 660, 848, 1226
MboI	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
MboII	GAAGA	8 cut(s)	92, 95, 132, 466, 571, 632, 778, 1153
MflI	RGATCY	4 cut(s)	122, 257, 506, 1224
MhlI	GDGCHC	3 cut(s)	632, 1154, 1189
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	5 cut(s)	321, 521, 819, 999, 1005
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	4 cut(s)	7, 429, 673, 848
MmeI	TCCRAC	1 cut(s)	412
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	4 cut(s)	525, 746, 807, 929
Msp20I	TGGCCA	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	499, 1126
MspCI	CTTAAG	1 cut(s)	928
MspI	CCGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	43, 80, 179, 590
NcoI	CCATGG	2 cut(s)	456, 800
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
NlaIV	GGNNCC	4 cut(s)	115, 259, 753, 1114
NmeAIII	GCCGAG	2 cut(s)	208, 1165
NmuCI	GTSAC	3 cut(s)	190, 676, 824
NspI	RCATGY	1 cut(s)	1222
PagI	TCATGA	4 cut(s)	222, 385, 412, 682
PaqCI	CACCTGC	1 cut(s)	1105
PciI	ACATGT	1 cut(s)	1218
PciSI	GCTCTTC	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	1001
PkrI	GCNGC	1 cut(s)	769
PleI	GAGTC	4 cut(s)	7, 429, 673, 848
PpsI	GAGTC	4 cut(s)	7, 429, 673, 848
Ppu21I	YACGTR	1 cut(s)	492
PscI	ACATGT	1 cut(s)	1218
PspFI	CCCAGC	1 cut(s)	1122
PspN4I	GGNNCC	4 cut(s)	115, 259, 753, 1114
PsuI	RGATCY	4 cut(s)	122, 257, 506, 1224
PvuII	CAGCTG	2 cut(s)	499, 1126
RsaI	GTAC	1 cut(s)	1114
RsaNI	GTAC	1 cut(s)	1113
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	4 cut(s)	525, 746, 807, 929
SatI	GCNGC	1 cut(s)	768
Sau3AI	GATC	7 cut(s)	122, 257, 409, 506, 658, 846, 1224
SchI	GAGTC	4 cut(s)	7, 429, 673, 848
SduI	GDGCHC	3 cut(s)	632, 1154, 1189
SfaNI	GCATC	3 cut(s)	38, 571, 944
SfcI	CTRYAG	2 cut(s)	672, 762
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
SnaBI	TACGTA	1 cut(s)	492
Sse9I	AATT	5 cut(s)	321, 521, 819, 999, 1005
SsiI	CCGC	1 cut(s)	654
SspMI	CTAG	3 cut(s)	716, 1034, 1190
StyI	CCWWGG	2 cut(s)	456, 800
TaaI	ACNGT	4 cut(s)	190, 763, 1201, 1213
TaiI	ACGT	2 cut(s)	494, 1137
TaqI	TCGA	2 cut(s)	938, 979
TasI	AATT	5 cut(s)	321, 521, 819, 999, 1005
Tru1I	TTAA	4 cut(s)	525, 746, 807, 929
Tru9I	TTAA	4 cut(s)	525, 746, 807, 929
TscAI	CASTG	1 cut(s)	1204
TseFI	GTSAC	3 cut(s)	190, 676, 824
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	3 cut(s)	190, 676, 824
TspRI	CASTG	1 cut(s)	1204
Van91I	CCANNNNNTGG	1 cut(s)	1001
Vha464I	CTTAAG	1 cut(s)	928
XapI	RAATTY	2 cut(s)	521, 1005
XceI	RCATGY	1 cut(s)	1222
XmiI	GTMKAC	2 cut(s)	1208, 1215
XspI	CTAG	3 cut(s)	716, 1034, 1190
ZraI	GACGTC	1 cut(s)	1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.