Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

26392336 .. 26394768

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGTTTCTTAGAGTTGTTGGAGGTGGCTTCAATGCCAATCGTTCAAGTTCTTCTTATCAGCGTCCTTGGCGCTTTCTTGGCAACCGATTACTGCTCTCTTCTCTCTGCTGACACCCGAAGATCCGTGAACAAGCTCGTCTTCGTGGTATTCACCCCCTGCATCATGTTTGCCAACCTTGCCGAGACTGTCACATTGCAGGACATTATTTCATGGTGGTTTATGCCCATAAATGTTGGAATCACCTTTCTAGTAGGAGGCATTCTTGGATGGTTGGTGGTCAAGCTACTGAACCCCAAACCTCAACTTCATGGCCTCATAATTGCTACTTGTGCCTCAGGCAATATGGGGAACCTTATGCTTATACTGGTCCCTGCCATCTGTGACGAGGAAGGCAGTCCTTTTGGGAATCGTAGTGTCTGCAGATCCATTGGGCTCTCCTACGCATCTTTCTCTATGGCCCTCGGGGGTTTCTACATATGGACGTACAGTTACCAACTGGTAAGAAGCTCTGCTACACAGTTTAGAGCTCTTGAAGCCGCCGGGTTGGTCAAGTCTCCCAACAAGGACATCGACTCTGATCCCCACGCTCTTCTCCTCAAGCCGCACCAAAACCAAGACCTTGAAATCCAAGGCAAACAAAAAGTGTCTACCAGGACATACATCAAGGACTTGCTCCATCAGATTCTTGAGGAACTCTTCGCACCACCCACCATTGGTGCCATTCTTGGCTTCGTCTTCGGAGCAACCAATTGGCTAAGGAATCTTATAATTGGGGAGAATGCCCCGTTGCGAGTGATCCAAGACTCAGTAAAGCTACTTGGGGAGGGCACAATTCCTTGCATCACACTCATACTGGGGGGAAACCTGATTCAGGGTCTGCGTTCATCAGCTGTGAAGAAATCAGTGATTGTGGGAGTGATAATTGTGCGCTATATCCTCCTTCCCGTGGTGGGAGTCGGGGTGGTCCAATTAGCAGGAAATCTAGGCTATCTTCCTCCAGACCCTCTCTTTCGATACGTTCTCATGCTTCAGTTCGCACTACCGCCTGCCATGAATATTAGCACAATGGCACAACTGTTCGACGTGGCTCAAGATGAGTGCTCGGTCATCTTCTTGTGGACCTACCTGGTTGCATCTTTAGCCCTCACCGTCTGGTCAACCATCTTCCTCTCCATCCTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

395

Amino Acids

43.07

Weight (kDa)

6.43

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 386	4.2e-88	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	650
AciI	CCGC	3 cut(s)	540, 605, 1046
AclWI	GGATC	4 cut(s)	117, 420, 575, 793
AcuI	CTGAAG	1 cut(s)	1016
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	4 cut(s)	716, 874, 949, 953
AgsI	TTSAA	4 cut(s)	33, 47, 536, 626
AjiI	CACGTC	1 cut(s)	1087
AjnI	CCWGG	2 cut(s)	653, 1128
AluBI	AGCT	6 cut(s)	136, 286, 510, 530, 817, 893
AluI	AGCT	6 cut(s)	136, 286, 510, 530, 817, 893
Alw21I	GWGCWC	2 cut(s)	532, 1106
Alw26I	GTCTC	2 cut(s)	179, 561
AlwI	GGATC	4 cut(s)	117, 420, 575, 793
AlwNI	CAGNNNCTG	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	2 cut(s)	313, 459
AspLEI	GCGC	2 cut(s)	74, 933
AspS9I	GGNCC	4 cut(s)	370, 460, 967, 1122
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	3 cut(s)	145, 235, 1141
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	3 cut(s)	370, 967, 1122
AxyI	CCTNAGG	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	2 cut(s)	438, 532
BarI	GAAGNNNNNNTAC	2 cut(s)	499, 531
BbsI	GAAGAC	2 cut(s)	133, 730
Bbv12I	GWGCWC	2 cut(s)	532, 1106
BccI	CCATC	5 cut(s)	264, 386, 687, 1172, 1184
BciT130I	CCWGG	2 cut(s)	655, 1130
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	179, 561
BfaI	CTAG	2 cut(s)	251, 986
BfmI	CTRYAG	1 cut(s)	421
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	2 cut(s)	540, 605
BlsI	GCNGC	2 cut(s)	541, 606
Bme1390I	CCNGG	3 cut(s)	544, 655, 1130
Bme18I	GGWCC	3 cut(s)	370, 967, 1122
BmeT110I	CYCGRG	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	1087
BmgT120I	GGNCC	4 cut(s)	370, 460, 967, 1122
BmiI	GGNNCC	3 cut(s)	353, 372, 721
BmrFI	CCNGG	3 cut(s)	544, 655, 1130
BmrI	ACTGGG	1 cut(s)	866
BmsI	GCATC	4 cut(s)	171, 455, 852, 1145
BmuI	ACTGGG	1 cut(s)	866
BpiI	GAAGAC	2 cut(s)	133, 730
BpmI	CTGGAG	1 cut(s)	984
Bpu10I	CCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	3 cut(s)	584, 710, 1077
BpuMI	CCSGG	1 cut(s)	544
BsaJI	CCNNGG	4 cut(s)	67, 463, 631, 948
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	4 cut(s)	716, 874, 949, 953
Bse1I	ACTGG	3 cut(s)	372, 504, 861
Bse21I	CCTNAGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	655, 1130
BseDI	CCNNGG	4 cut(s)	67, 463, 631, 948
BseGI	GGATG	2 cut(s)	275, 1176
BseLI	CCNNNNNNNGG	4 cut(s)	716, 874, 949, 953
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	351, 822
BseNI	ACTGG	3 cut(s)	372, 504, 861
BseRI	GAGGAG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	833
BshFI	GGCC	2 cut(s)	315, 461
BshNI	GGYRCC	1 cut(s)	719
BsiHKAI	GWGCWC	2 cut(s)	532, 1106
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	4 cut(s)	716, 874, 949, 953
BsmAI	GTCTC	2 cut(s)	179, 561
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	2 cut(s)	261, 787
BsnI	GGCC	2 cut(s)	315, 461
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	4 cut(s)	438, 532, 833, 1106
Bsp143I	GATC	4 cut(s)	122, 425, 580, 798
BspACI	CCGC	3 cut(s)	540, 605, 1046
BspANI	GGCC	2 cut(s)	315, 461
BspCNI	CTCAG	2 cut(s)	350, 821
BspLI	GGNNCC	3 cut(s)	353, 372, 721
BspMAI	CTGCAG	1 cut(s)	425
BspPI	GGATC	4 cut(s)	117, 420, 575, 793
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	372, 504, 861
BssECI	CCNNGG	4 cut(s)	67, 463, 631, 948
BssMI	GATC	4 cut(s)	122, 425, 580, 798
BssT1I	CCWWGG	2 cut(s)	67, 631
Bst2UI	CCWGG	2 cut(s)	655, 1130
Bst4CI	ACNGT	5 cut(s)	190, 491, 522, 1080, 1153
Bst6I	CTCTTC	3 cut(s)	105, 597, 704
BstC8I	GCNNGC	1 cut(s)	1050
BstDEI	CTNAG	4 cut(s)	10, 337, 758, 808
BstDSI	CCRYGG	1 cut(s)	948
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	275, 1176
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 933
BstKTI	GATC	4 cut(s)	125, 428, 583, 801
BstMAI	GTCTC	2 cut(s)	179, 561
BstMBI	GATC	4 cut(s)	122, 425, 580, 798
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 80, 179, 332, 536, 1142
BstNI	CCWGG	2 cut(s)	655, 1130
BstSCI	CCNGG	3 cut(s)	542, 653, 1128
BstSFI	CTRYAG	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	833
BstV2I	GAAGAC	2 cut(s)	133, 730
BstX2I	RGATCY	2 cut(s)	122, 425
BstYI	RGATCY	2 cut(s)	122, 425
Bsu36I	CCTNAGG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	315, 461
BtgI	CCRYGG	1 cut(s)	948
BtrI	CACGTC	1 cut(s)	1087
BtsCI	GGATG	2 cut(s)	275, 1176
BtsIMutI	CAGTG	1 cut(s)	912
Cac8I	GCNNGC	1 cut(s)	1050
CaiI	CAGNNNCTG	1 cut(s)	880
CfoI	GCGC	2 cut(s)	74, 933
Cfr13I	GGNCC	4 cut(s)	370, 460, 967, 1122
CseI	GACGC	1 cut(s)	52
CsiI	ACCWGGT	1 cut(s)	1128
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	5 cut(s)	166, 213, 311, 1027, 1054
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	4 cut(s)	10, 337, 758, 808
DpnI	GATC	4 cut(s)	124, 427, 582, 800
DpnII	GATC	4 cut(s)	122, 425, 580, 798
Eam1104I	CTCTTC	3 cut(s)	105, 597, 704
EarI	CTCTTC	3 cut(s)	105, 597, 704
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	2 cut(s)	67, 631
Eco24I	GRGCYC	2 cut(s)	438, 532
Eco47I	GGWCC	3 cut(s)	370, 967, 1122
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	1016
Eco81I	CCTNAGG	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	530
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	653, 1128
EcoT14I	CCWWGG	2 cut(s)	67, 631
EcoT38I	GRGCYC	2 cut(s)	438, 532
ErhI	CCWWGG	2 cut(s)	67, 631
FaeI	CATG	5 cut(s)	169, 216, 314, 1030, 1057
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 125, 157
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	5 cut(s)	165, 212, 310, 1026, 1053
FauNDI	CATATG	1 cut(s)	479
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	2 cut(s)	540, 605
FokI	GGATG	2 cut(s)	282, 1163
FriOI	GRGCYC	2 cut(s)	438, 532
Fsp4HI	GCNGC	2 cut(s)	540, 605
FspBI	CTAG	2 cut(s)	251, 986
GlaI	GCGC	2 cut(s)	73, 932
GluI	GCNGC	2 cut(s)	540, 605
GsuI	CTGGAG	1 cut(s)	984
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	315, 461
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	74, 933
Hin1II	CATG	5 cut(s)	169, 216, 314, 1030, 1057
Hin6I	GCGC	2 cut(s)	72, 931
HinP1I	GCGC	2 cut(s)	72, 931
HincII	GTYRAC	1 cut(s)	1161
HindII	GTYRAC	1 cut(s)	1161
HinfI	GANTC	8 cut(s)	240, 409, 575, 685, 763, 806, 871, 957
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	3 cut(s)	145, 235, 1141
Hpy166II	GTNNAC	4 cut(s)	130, 651, 1122, 1161
Hpy188I	TCNGA	3 cut(s)	580, 684, 743
Hpy188III	TCNNGA	5 cut(s)	533, 689, 1001, 1094, 1185
Hpy8I	GTNNAC	4 cut(s)	130, 651, 1122, 1161
Hpy99I	CGWCG	1 cut(s)	1088
HpyAV	CCTTC	2 cut(s)	386, 953
HpyCH4III	ACNGT	5 cut(s)	190, 491, 522, 1080, 1153
HpyCH4IV	ACGT	3 cut(s)	485, 1020, 1086
HpyCH4V	TGCA	5 cut(s)	162, 199, 423, 843, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 80, 179, 332, 536, 1142
HpyF3I	CTNAG	4 cut(s)	10, 337, 758, 808
HpySE526I	ACGT	3 cut(s)	485, 1020, 1086
Hsp92II	CATG	5 cut(s)	169, 216, 314, 1030, 1057
HspAI	GCGC	2 cut(s)	72, 931
Kzo9I	GATC	4 cut(s)	122, 425, 580, 798
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	2 cut(s)	681, 743
LweI	GCATC	4 cut(s)	171, 455, 852, 1145
MabI	ACCWGGT	1 cut(s)	1128
MaeI	CTAG	2 cut(s)	251, 986
MaeII	ACGT	3 cut(s)	485, 1020, 1086
MaeIII	GTNAC	3 cut(s)	190, 383, 491
MalI	GATC	4 cut(s)	124, 427, 582, 800
MboI	GATC	4 cut(s)	122, 425, 580, 798
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	2 cut(s)	122, 425
MhlI	GDGCHC	4 cut(s)	438, 532, 833, 1106
MluCI	AATT	6 cut(s)	321, 751, 771, 834, 924, 971
MlyI	GAGTC	3 cut(s)	569, 800, 966
MmeI	TCCRAC	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	893
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	3 cut(s)	544, 655, 1130
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	2 cut(s)	261, 787
MvaI	CCWGG	2 cut(s)	655, 1130
MwoI	GCNNNNNNNGC	6 cut(s)	69, 80, 179, 332, 536, 1142
NciI	CCSGG	1 cut(s)	544
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	4 cut(s)	122, 425, 580, 798
NlaIII	CATG	5 cut(s)	169, 216, 314, 1030, 1057
NlaIV	GGNNCC	3 cut(s)	353, 372, 721
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	190, 383
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	2 cut(s)	261, 787
PfeI	GAWTC	5 cut(s)	240, 409, 685, 763, 871
PkrI	GCNGC	2 cut(s)	541, 606
PleI	GAGTC	3 cut(s)	569, 800, 965
PpsI	GAGTC	3 cut(s)	569, 800, 965
PsiI	TTATAA	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	653, 1128
PspGI	CCWGG	2 cut(s)	653, 1128
PspN4I	GGNNCC	3 cut(s)	353, 372, 721
PspPI	GGNCC	4 cut(s)	370, 460, 967, 1122
PstI	CTGCAG	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	2 cut(s)	122, 425
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SacI	GAGCTC	1 cut(s)	532
SapI	GCTCTTC	1 cut(s)	597
SatI	GCNGC	2 cut(s)	540, 605
Sau3AI	GATC	4 cut(s)	122, 425, 580, 798
Sau96I	GGNCC	4 cut(s)	370, 460, 967, 1122
SchI	GAGTC	3 cut(s)	569, 800, 966
ScrFI	CCNGG	3 cut(s)	544, 655, 1130
SduI	GDGCHC	4 cut(s)	438, 532, 833, 1106
SexAI	ACCWGGT	1 cut(s)	1128
SfaNI	GCATC	4 cut(s)	171, 455, 852, 1145
SfcI	CTRYAG	1 cut(s)	421
SinI	GGWCC	3 cut(s)	370, 967, 1122
SmlI	CTYRAG	3 cut(s)	599, 689, 1092
SmoI	CTYRAG	3 cut(s)	599, 689, 1092
Sse9I	AATT	6 cut(s)	321, 751, 771, 834, 924, 971
SsiI	CCGC	3 cut(s)	540, 605, 1046
SspI	AATATT	1 cut(s)	1060
SspMI	CTAG	2 cut(s)	251, 986
SstI	GAGCTC	1 cut(s)	532
StyD4I	CCNGG	3 cut(s)	542, 653, 1128
StyI	CCWWGG	2 cut(s)	67, 631
TaaI	ACNGT	5 cut(s)	190, 491, 522, 1080, 1153
TaiI	ACGT	3 cut(s)	488, 1023, 1089
TaqI	TCGA	3 cut(s)	573, 1015, 1083
TaqII	GACCGA	1 cut(s)	1096
TasI	AATT	6 cut(s)	321, 751, 771, 834, 924, 971
TauI	GCSGC	2 cut(s)	542, 607
TfiI	GAWTC	5 cut(s)	240, 409, 685, 763, 871
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	2 cut(s)	190, 383
Tsp45I	GTSAC	2 cut(s)	190, 383
TspDTI	ATGAA	4 cut(s)	201, 299, 876, 1070
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	912
VpaK11BI	GGWCC	3 cut(s)	370, 967, 1122
XagI	CCTNNNNNAGG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	650
XspI	CTAG	2 cut(s)	251, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.