Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

4853971 .. 4854410

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0062200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAAAACCTTCAATGCTGAAACTGGTAGGGTTAACAAACTGCCTAAAGTGAAATCGCTTCCGGGCGTACCTAAACAACCAGGTGGAGTTGAGTGTGGCTATTATGTTATGCGATACATGAAAGAGATAATAGAGGATGAGACACTTTCATTTCCTACCAAGTGGGCGGTAAAGATGCGGAAGTCATATAACCAAAATCAAATTGACGAGGTGCGCATTGAAGTGGCTGATTATATACAGAGTTTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

83

Amino Acids

9.62

Weight (kDa)

9.07

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AciI	CCGC	2 cut(s)	167, 178
AfaI	GTAC	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	13, 221
AjnI	CCWGG	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	134
Bme1390I	CCNGG	2 cut(s)	63, 81
BmrFI	CCNGG	2 cut(s)	63, 81
BmsI	GCATC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	134
BspACI	CCGC	2 cut(s)	167, 178
BsrI	ACTGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	61, 79
BtsCI	GGATG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	2 cut(s)	99, 227
CviKI_1	RGCY	2 cut(s)	99, 227
CviQI	GTAC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	121
FaiI	YATR	7 cut(s)	105, 110, 119, 187, 189, 234, 236
FatI	CATG	1 cut(s)	117
FokI	GGATG	1 cut(s)	149
FspAI	RTGCGCAY	1 cut(s)	215
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	214
KspAI	GTTAAC	1 cut(s)	34
LpnPI	CCDG	4 cut(s)	9, 66, 75, 93
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	79
MluCI	AATT	1 cut(s)	201
MnlI	CCTC	2 cut(s)	127, 202
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	63, 81
MvaI	CCWGG	1 cut(s)	81
NciI	CCSGG	1 cut(s)	63
NlaIII	CATG	1 cut(s)	121
NsbI	TGCGCA	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	63, 81
SetI	ASST	4 cut(s)	11, 73, 85, 213
SexAI	ACCWGGT	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	165
SgeI	CNNG	8 cut(s)	36, 74, 75, 92, 93, 130, 172, 220
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	167, 178
StyD4I	CCNGG	2 cut(s)	61, 79
TasI	AATT	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TspDTI	ATGAA	3 cut(s)	17, 134, 138
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.