Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

8485734 .. 8487830

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTTTCTGGACTCTGCTTGAGGTGGCATCTATGCCAGTTCTGCAAGTTTTGATCATCAGTCTGTTGGGAGCTTACCTGTCTACTGAGTATTGCAATCTTCTTCCTTCAGGCGCCAGAAGATCCTTGAATAGGATAGTGTTTGTGGTGTTTACACCCTCCCTCATGTTTGCTAGTGTTGCCAAAACTGTCACATTTGATGACATCATTTCATGGTGGTTTATGATTGTCAATGTGGGACTTACATTTTTGTTTGGAACCATTCTTGGATGGTTAGTGGTAAAGATACTGAAACCAAAGCCTTATCAGGAAGGCCTTGTAATTGCTACATGTTCATCAGCAAACTTGGGAAACCTTCTACTTATAGTTGTGCCAGCAATTTGTCATGAGGATGGGAACCCTTTCGGCGATCATGAAGTTTGTAGCGCAGTTGGACTCTCCTATGTCTCGTTTTCCATGGCGCTTGGTGGTTTCTTCATTTGGACTTATACTTATCAGCTGATAAAGTCCTCATCTGTGAAATTTATAGCGCTTCAAGAAGCAGAAAATGAGACCGCGAAGAGGCCAAACAAGGATTTAGATGCTGATGGAGCAACTCACCTTCTCAAAGGAGGAGATGAGGAGCAGGGCTCTATTGTAGTCTCATCTAAATCTGCGGATCACCCCCCTGCTCAGATAGTACCTCACGAACCAGATGTATCATTCCCCCAAAAAGTATTAGCGTTCTTTAAACAGATTTTACATGAGTTACTGGCACCACCAACTCTAGCTGCATTTATTGGATTTGTCTTTGGGGCAATTCCATGGCTTAAACGCTTGATAATTGGTGACTCCGCCCCCCTCCGAGTGATCCAAGATTCAATTGCACAACTTGGGAATGGAACTATTCCTTGTATCACACTTATTCTTGGAGGCAATCTCATCCAAGGCTTACGAGCATCGACAATCAAAATACCTGTCATCCTTGGAATCATCGTTGCACGATATGTTCTACTTCCAGTAATTGGTATTTGGATTGTAAAAGGAGCAGACCAACTAGGGTTTCTCCCACCAGACCCTTTGTTCAAGTTTGTGCTGATGGTTCAATTCACATTGCCACCTGCCATGAACATTGGTACCATAACCCAGCTGTTTGATGTCGCCGAGGCAGAGTGCTCGGTCATCTTCCTGTGGACGTACTTGGTCTGTGCCCTAGCACTTACCGTGTGGTCTACAGTCTACATGTGGATCTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

412

Amino Acids

44.99

Weight (kDa)

5.69

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 403	1.4e-86	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1108
Acc36I	ACCTGC	1 cut(s)	1108
Acc65I	GGTACC	1 cut(s)	1115
AccB1I	GGYRCC	3 cut(s)	113, 754, 1115
AccB7I	CCANNNNNTGG	1 cut(s)	1004
AccI	GTMKAC	3 cut(s)	83, 1211, 1218
AccII	CGCG	1 cut(s)	557
AciI	CCGC	3 cut(s)	555, 656, 834
AclWI	GGATC	4 cut(s)	117, 666, 844, 1235
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	681, 1117, 1178
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	3 cut(s)	132, 561, 1004
AflIII	ACRYGT	2 cut(s)	329, 1221
AgsI	TTSAA	5 cut(s)	130, 536, 861, 1066, 1085
AjuI	GAANNNNNNNTTGG	2 cut(s)	1026, 1058
AluBI	AGCT	4 cut(s)	74, 499, 770, 1129
AluI	AGCT	4 cut(s)	74, 499, 770, 1129
Alw21I	GWGCWC	1 cut(s)	1157
Alw26I	GTCTC	3 cut(s)	451, 545, 646
AlwI	GGATC	4 cut(s)	117, 666, 844, 1235
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	2 cut(s)	313, 563
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	1 cut(s)	521
ArsI	GACNNNNNNTTYG	2 cut(s)	942, 974
Asp700I	GAANNNNTTC	1 cut(s)	401
Asp718I	GGTACC	1 cut(s)	1115
AspLEI	GCGC	4 cut(s)	116, 428, 463, 532
AsuHPI	GGTGA	3 cut(s)	590, 653, 839
BaeGI	GKGCMC	1 cut(s)	1192
BaeI	ACNNNNGTAYC	2 cut(s)	1099, 1132
BanI	GGYRCC	3 cut(s)	113, 754, 1115
BanII	GRGCYC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	1157
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	4 cut(s)	264, 386, 581, 1072
BcgI	CGANNNNNNTGC	2 cut(s)	1137, 1171
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	3 cut(s)	451, 545, 646
BfaI	CTAG	4 cut(s)	174, 767, 1037, 1193
BfmI	CTRYAG	1 cut(s)	1212
BfoI	RGCGCY	3 cut(s)	117, 464, 533
BfuAI	ACCTGC	1 cut(s)	1108
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
BmiI	GGNNCC	5 cut(s)	115, 259, 398, 756, 1117
BmsI	GCATC	3 cut(s)	38, 571, 947
BplI	GAGNNNNNCTC	4 cut(s)	614, 646, 903, 935
BpuEI	CTTGAG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	5 cut(s)	456, 803, 925, 964, 1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 561, 1004
Bse1I	ACTGG	3 cut(s)	38, 756, 998
Bse3DI	GCAATG	1 cut(s)	1091
BseDI	CCNNGG	5 cut(s)	456, 803, 925, 964, 1143
BseGI	GGATG	4 cut(s)	275, 397, 921, 960
BseLI	CCNNNNNNNGG	3 cut(s)	132, 561, 1004
BseMI	GCAATG	1 cut(s)	1091
BseMII	CTCAG	2 cut(s)	78, 686
BseNI	ACTGG	3 cut(s)	38, 756, 998
BseRI	GAGGAG	2 cut(s)	627, 635
BseSI	GKGCMC	1 cut(s)	1192
BseXI	GCAGC	1 cut(s)	757
BseYI	CCCAGC	1 cut(s)	1125
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	2 cut(s)	315, 565
BshNI	GGYRCC	3 cut(s)	113, 754, 1115
BsiHKAI	GWGCWC	1 cut(s)	1157
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	132, 561, 1004
BsmAI	GTCTC	3 cut(s)	451, 545, 646
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	315, 565
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	632, 1157, 1192
Bsp143I	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
Bsp19I	CCATGG	2 cut(s)	456, 803
BspACI	CCGC	3 cut(s)	555, 656, 834
BspANI	GGCC	2 cut(s)	315, 565
BspCNI	CTCAG	2 cut(s)	79, 685
BspFNI	CGCG	1 cut(s)	557
BspHI	TCATGA	2 cut(s)	385, 412
BspLI	GGNNCC	5 cut(s)	115, 259, 398, 756, 1117
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	4 cut(s)	117, 666, 844, 1235
BspT107I	GGYRCC	3 cut(s)	113, 754, 1115
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	1091
BsrI	ACTGG	3 cut(s)	38, 756, 998
BssECI	CCNNGG	5 cut(s)	456, 803, 925, 964, 1143
BssMI	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	4 cut(s)	456, 803, 925, 964
Bst4CI	ACNGT	3 cut(s)	190, 1204, 1216
Bst6I	CTCTTC	1 cut(s)	554
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	87, 672
BstDSI	CCRYGG	2 cut(s)	456, 803
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstF5I	GGATG	4 cut(s)	275, 397, 921, 960
BstFNI	CGCG	1 cut(s)	557
BstH2I	RGCGCY	3 cut(s)	117, 464, 533
BstHHI	GCGC	4 cut(s)	116, 428, 463, 532
BstKTI	GATC	6 cut(s)	57, 125, 412, 661, 852, 1230
BstMAI	GTCTC	3 cut(s)	451, 545, 646
BstMBI	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
BstNSI	RCATGY	2 cut(s)	333, 1225
BstSFI	CTRYAG	1 cut(s)	1212
BstSLI	GKGCMC	1 cut(s)	1192
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	757
BstX2I	RGATCY	2 cut(s)	122, 1227
BstYI	RGATCY	2 cut(s)	122, 1227
BsuRI	GGCC	2 cut(s)	315, 565
BtgI	CCRYGG	2 cut(s)	456, 803
BtsCI	GGATG	4 cut(s)	275, 397, 921, 960
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	2 cut(s)	385, 412
CfoI	GCGC	4 cut(s)	116, 428, 463, 532
Csp6I	GTAC	3 cut(s)	680, 1116, 1177
CviQI	GTAC	3 cut(s)	680, 1116, 1177
DdeI	CTNAG	2 cut(s)	87, 672
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	6 cut(s)	56, 124, 411, 660, 851, 1229
DpnII	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
DraI	TTTAAA	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	823
Eco130I	CCWWGG	4 cut(s)	456, 803, 925, 964
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoT14I	CCWWGG	4 cut(s)	456, 803, 925, 964
EcoT38I	GRGCYC	1 cut(s)	632
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	4 cut(s)	456, 803, 925, 964
FaqI	GGGAC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	3 cut(s)	83, 1211, 1218
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	4 cut(s)	282, 404, 908, 947
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	4 cut(s)	174, 767, 1037, 1193
GlaI	GCGC	4 cut(s)	115, 427, 462, 531
GluI	GCNGC	1 cut(s)	771
GsaI	CCCAGC	1 cut(s)	1129
HaeII	RGCGCY	3 cut(s)	117, 464, 533
HaeIII	GGCC	2 cut(s)	315, 565
HhaI	GCGC	4 cut(s)	116, 428, 463, 532
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	4 cut(s)	114, 426, 461, 530
HinP1I	GCGC	4 cut(s)	114, 426, 461, 530
HinfI	GANTC	5 cut(s)	13, 435, 830, 857, 969
HphI	GGTGA	3 cut(s)	590, 653, 839
Hpy166II	GTNNAC	5 cut(s)	84, 153, 1173, 1212, 1219
Hpy188I	TCNGA	2 cut(s)	675, 845
Hpy188III	TCNNGA	7 cut(s)	10, 308, 386, 413, 536, 686, 1236
Hpy8I	GTNNAC	5 cut(s)	84, 153, 1173, 1212, 1219
HpyAV	CCTTC	4 cut(s)	117, 305, 365, 611
HpyCH4III	ACNGT	3 cut(s)	190, 1204, 1216
HpyCH4IV	ACGT	1 cut(s)	1175
HpyCH4V	TGCA	5 cut(s)	46, 96, 773, 866, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
HpyF3I	CTNAG	2 cut(s)	87, 672
HpySE526I	ACGT	1 cut(s)	1175
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	4 cut(s)	114, 426, 461, 530
KasI	GGCGCC	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	1119
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
LmnI	GCTCC	4 cut(s)	71, 590, 622, 1025
Lsp1109I	GCAGC	1 cut(s)	757
LweI	GCATC	3 cut(s)	38, 571, 947
MaeI	CTAG	4 cut(s)	174, 767, 1037, 1193
MaeII	ACGT	1 cut(s)	1175
MaeIII	GTNAC	3 cut(s)	190, 747, 827
MalI	GATC	6 cut(s)	56, 124, 411, 660, 851, 1229
MboI	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
MboII	GAAGA	6 cut(s)	92, 95, 132, 466, 571, 1156
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	2 cut(s)	122, 1227
MhlI	GDGCHC	3 cut(s)	632, 1157, 1192
MluCI	AATT	8 cut(s)	321, 378, 521, 798, 822, 861, 1002, 1085
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	7, 429, 824
MmeI	TCCRAC	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	2 cut(s)	729, 810
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	499, 1129
MunI	CAATTG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
NarI	GGCGCC	1 cut(s)	114
NcoI	CCATGG	2 cut(s)	456, 803
NdeII	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
NlaIV	GGNNCC	5 cut(s)	115, 259, 398, 756, 1117
NmeAIII	GCCGAG	1 cut(s)	1168
NmuCI	GTSAC	2 cut(s)	190, 827
NspI	RCATGY	2 cut(s)	333, 1225
PagI	TCATGA	2 cut(s)	385, 412
PaqCI	CACCTGC	1 cut(s)	1108
PceI	AGGCCT	1 cut(s)	315
PciI	ACATGT	2 cut(s)	329, 1221
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	857, 969
PflMI	CCANNNNNTGG	1 cut(s)	1004
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	3 cut(s)	7, 429, 824
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	3 cut(s)	7, 429, 824
PscI	ACATGT	2 cut(s)	329, 1221
PspFI	CCCAGC	1 cut(s)	1125
PspN4I	GGNNCC	5 cut(s)	115, 259, 398, 756, 1117
PsuI	RGATCY	2 cut(s)	122, 1227
PvuII	CAGCTG	2 cut(s)	499, 1129
RsaI	GTAC	3 cut(s)	681, 1117, 1178
RsaNI	GTAC	3 cut(s)	680, 1116, 1177
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	729, 810
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	6 cut(s)	54, 122, 409, 658, 849, 1227
SchI	GAGTC	3 cut(s)	7, 429, 824
SduI	GDGCHC	3 cut(s)	632, 1157, 1192
SfaNI	GCATC	3 cut(s)	38, 571, 947
SfcI	CTRYAG	1 cut(s)	1212
SfoI	GGCGCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	8 cut(s)	321, 378, 521, 798, 822, 861, 1002, 1085
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	555, 656, 834
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	4 cut(s)	174, 767, 1037, 1193
StuI	AGGCCT	1 cut(s)	315
StyI	CCWWGG	4 cut(s)	456, 803, 925, 964
TaaI	ACNGT	3 cut(s)	190, 1204, 1216
TaiI	ACGT	1 cut(s)	1178
TaqI	TCGA	1 cut(s)	941
TaqII	GACCGA	1 cut(s)	1147
TasI	AATT	8 cut(s)	321, 378, 521, 798, 822, 861, 1002, 1085
TfiI	GAWTC	2 cut(s)	857, 969
Tru1I	TTAA	2 cut(s)	729, 810
Tru9I	TTAA	2 cut(s)	729, 810
TseFI	GTSAC	2 cut(s)	190, 827
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	2 cut(s)	190, 827
TspDTI	ATGAA	5 cut(s)	201, 324, 429, 466, 1121
Van91I	CCANNNNNTGG	1 cut(s)	1004
XagI	CCTNNNNNAGG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	2 cut(s)	333, 1225
XmiI	GTMKAC	3 cut(s)	83, 1211, 1218
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	4 cut(s)	174, 767, 1037, 1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.