Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Reverse (-)

83009457 .. 83012837

Gene Structure 3381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGTTTCTGGACTCTGTTGGAGGTGGCATCTATGCCAGTTCTGCAAGTTTTGATAATCAGTCTGTTGGGAGCTTACCTGTCTAGTGAGTATTGCAATCTTCTTCCTTCGGGAGCCAGAAGATCCTTGAATAGGATAGTGTTTGTGGTGTTTACACCCTCCCTCATGTTTGCAAGTGTTGCCAAGACTGTCACATTTGATGACATCATTTCATGGTGGTTTATGATTGTCAATGTGGGACTTACATTTTTGTTTGGAACCATTCTTGGATGGTTAGTGGTAAAGATACTGAAACCAAAGCCTTATCAGGAAGGCCTTGTAATTGCTACATGTTCATCAGCAAACTTGGGAAACCTTCTACTTATAGTTGTGCCTGCAATTTGTCATGAGGATGGGAACCCTTTCGGTGATCATGAAGTTTGTAGCGCAGTTGGACTCTCCTATGTCTCGTTTTCCATGGCGCTTGGTGGTTTCTTCATTTGGACTTATACTTATCAGCTGATAAAGTCATCATCTCTGAAATTTATAGCGCTTCAAGAAGCAGAAAATGAGGCCACGAAGAGGCCAAACAAGGATTTAGATGCTGATGGAGCAACTCACCTTCTCAAAGGAGGAGATGAAGAGCAGGGCTCTATTGTAGTCTCATCTAAATCTGCAGATCACCCCCCTGCTATAGTACCTCATGAACCAGATGTATCATTCCCCCAAAAAGTATTAGCGTTCTTTAAACAGATTTTACATGAGTTACTGGCACCACCAACTCTAGCTGCATTTATTGGATTGGTATTTGGGGCAATTCCATGGCTTAAAAGCTTGATAATTGGTGACTCCGCCCCCTCCGAGAATGGAACTATTCCTTGTATCACACTTATTCTTGGAGGCAATCTCATCCAAGGAGCAGACCAACTAGGGTTTCTCCCACCAGACCCTTTGTTCAAGTTTGTGCTGATGGTTCAATTCACATTGCCACCTGCCATGAACATTGGTACCATAACCCAGCTGTTTGATGTCGCCGAGGCAGAGTGCTCGGTCATCTTCCTGTGGACATACTTGGTCTGTGCCCTAGCACTTACTGTGTGGTCTACAGTCTACATGTGGATCTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

369

Amino Acids

40.21

Weight (kDa)

4.92

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 301	3e-59	Membrane transport protein
Mem_trans	PF03547	315 - 360	6.7e-11	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	979
Acc36I	ACCTGC	1 cut(s)	979
Acc65I	GGTACC	1 cut(s)	986
AccB1I	GGYRCC	2 cut(s)	751, 986
AccI	GTMKAC	2 cut(s)	1082, 1089
AciI	CCGC	1 cut(s)	831
AclWI	GGATC	2 cut(s)	117, 1106
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	2 cut(s)	678, 988
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	132, 561
AflIII	ACRYGT	2 cut(s)	329, 1092
AgsI	TTSAA	4 cut(s)	130, 536, 937, 956
AjuI	GAANNNNNNNTTGG	2 cut(s)	897, 929
AluBI	AGCT	5 cut(s)	74, 499, 767, 813, 1000
AluI	AGCT	5 cut(s)	74, 499, 767, 813, 1000
Alw21I	GWGCWC	1 cut(s)	1028
Alw26I	GTCTC	2 cut(s)	451, 646
AlwI	GGATC	2 cut(s)	117, 1106
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	3 cut(s)	313, 552, 563
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	401
Asp718I	GGTACC	1 cut(s)	986
AspLEI	GCGC	3 cut(s)	428, 463, 532
AsuHPI	GGTGA	4 cut(s)	419, 590, 653, 836
BaeGI	GKGCMC	1 cut(s)	1063
BaeI	ACNNNNGTAYC	2 cut(s)	970, 1003
BanI	GGYRCC	2 cut(s)	751, 986
BanII	GRGCYC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	1028
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	4 cut(s)	264, 386, 581, 943
BcgI	CGANNNNNNTGC	2 cut(s)	1008, 1042
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	451, 646
BfaI	CTAG	4 cut(s)	84, 764, 908, 1064
BfmI	CTRYAG	3 cut(s)	654, 672, 1083
BfoI	RGCGCY	2 cut(s)	464, 533
BfuAI	ACCTGC	1 cut(s)	979
BisI	GCNGC	1 cut(s)	768
BlsI	GCNGC	1 cut(s)	769
BmiI	GGNNCC	5 cut(s)	115, 259, 398, 753, 988
BmsI	GCATC	2 cut(s)	38, 571
BplI	GAGNNNNNCTC	4 cut(s)	614, 646, 870, 902
BsaJI	CCNNGG	4 cut(s)	456, 800, 892, 1014
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 561
Bse1I	ACTGG	2 cut(s)	38, 753
Bse3DI	GCAATG	1 cut(s)	962
BseDI	CCNNGG	4 cut(s)	456, 800, 892, 1014
BseGI	GGATG	3 cut(s)	275, 397, 888
BseLI	CCNNNNNNNGG	2 cut(s)	132, 561
BseMI	GCAATG	1 cut(s)	962
BseNI	ACTGG	2 cut(s)	38, 753
BseRI	GAGGAG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	1063
BseXI	GCAGC	1 cut(s)	754
BseYI	CCCAGC	1 cut(s)	996
BshFI	GGCC	3 cut(s)	315, 554, 565
BshNI	GGYRCC	2 cut(s)	751, 986
BsiHKAI	GWGCWC	1 cut(s)	1028
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	132, 561
BsmAI	GTCTC	2 cut(s)	451, 646
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	315, 554, 565
Bsp1286I	GDGCHC	3 cut(s)	632, 1028, 1063
Bsp143I	GATC	4 cut(s)	122, 409, 658, 1098
Bsp19I	CCATGG	2 cut(s)	456, 800
BspACI	CCGC	1 cut(s)	831
BspANI	GGCC	3 cut(s)	315, 554, 565
BspHI	TCATGA	3 cut(s)	385, 412, 682
BspLI	GGNNCC	5 cut(s)	115, 259, 398, 753, 988
BspMAI	CTGCAG	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	979
BspPI	GGATC	2 cut(s)	117, 1106
BspQI	GCTCTTC	1 cut(s)	615
BspT107I	GGYRCC	2 cut(s)	751, 986
BsrDI	GCAATG	1 cut(s)	962
BsrI	ACTGG	2 cut(s)	38, 753
BssECI	CCNNGG	4 cut(s)	456, 800, 892, 1014
BssMI	GATC	4 cut(s)	122, 409, 658, 1098
BssT1I	CCWWGG	3 cut(s)	456, 800, 892
Bst4CI	ACNGT	3 cut(s)	190, 1075, 1087
Bst6I	CTCTTC	2 cut(s)	554, 615
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	375
BstDSI	CCRYGG	2 cut(s)	456, 800
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstF5I	GGATG	3 cut(s)	275, 397, 888
BstH2I	RGCGCY	2 cut(s)	464, 533
BstHHI	GCGC	3 cut(s)	428, 463, 532
BstKTI	GATC	4 cut(s)	125, 412, 661, 1101
BstMAI	GTCTC	2 cut(s)	451, 646
BstMBI	GATC	4 cut(s)	122, 409, 658, 1098
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
BstNSI	RCATGY	2 cut(s)	333, 1096
BstSFI	CTRYAG	3 cut(s)	654, 672, 1083
BstSLI	GKGCMC	1 cut(s)	1063
BstV1I	GCAGC	1 cut(s)	754
BstX2I	RGATCY	2 cut(s)	122, 1098
BstYI	RGATCY	2 cut(s)	122, 1098
BsuRI	GGCC	3 cut(s)	315, 554, 565
BtgI	CCRYGG	2 cut(s)	456, 800
BtsCI	GGATG	3 cut(s)	275, 397, 888
BveI	ACCTGC	1 cut(s)	979
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	3 cut(s)	385, 412, 682
CfoI	GCGC	3 cut(s)	428, 463, 532
Csp6I	GTAC	2 cut(s)	677, 987
CviQI	GTAC	2 cut(s)	677, 987
DpnI	GATC	4 cut(s)	124, 411, 660, 1100
DpnII	GATC	4 cut(s)	122, 409, 658, 1098
DraI	TTTAAA	1 cut(s)	727
Eam1104I	CTCTTC	2 cut(s)	554, 615
EarI	CTCTTC	2 cut(s)	554, 615
EciI	GGCGGA	1 cut(s)	820
Eco130I	CCWWGG	3 cut(s)	456, 800, 892
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	632
Eco47III	AGCGCT	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	456, 800, 892
EcoT38I	GRGCYC	1 cut(s)	632
ErhI	CCWWGG	3 cut(s)	456, 800, 892
FaqI	GGGAC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	2 cut(s)	1082, 1089
Fnu4HI	GCNGC	1 cut(s)	768
FokI	GGATG	3 cut(s)	282, 404, 875
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	768
FspBI	CTAG	4 cut(s)	84, 764, 908, 1064
GlaI	GCGC	3 cut(s)	427, 462, 531
GluI	GCNGC	1 cut(s)	768
GsaI	CCCAGC	1 cut(s)	1000
HaeII	RGCGCY	2 cut(s)	464, 533
HaeIII	GGCC	3 cut(s)	315, 554, 565
HhaI	GCGC	3 cut(s)	428, 463, 532
Hin6I	GCGC	3 cut(s)	426, 461, 530
HinP1I	GCGC	3 cut(s)	426, 461, 530
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	3 cut(s)	13, 435, 827
HphI	GGTGA	4 cut(s)	419, 590, 653, 836
Hpy166II	GTNNAC	4 cut(s)	153, 1044, 1083, 1090
Hpy188I	TCNGA	2 cut(s)	519, 841
Hpy188III	TCNNGA	8 cut(s)	10, 111, 308, 386, 413, 536, 683, 1107
Hpy8I	GTNNAC	4 cut(s)	153, 1044, 1083, 1090
HpyAV	CCTTC	4 cut(s)	117, 305, 365, 611
HpyCH4III	ACNGT	3 cut(s)	190, 1075, 1087
HpyCH4V	TGCA	6 cut(s)	46, 96, 173, 377, 656, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
HspAI	GCGC	3 cut(s)	426, 461, 530
KpnI	GGTACC	1 cut(s)	990
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	122, 409, 658, 1098
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	4 cut(s)	71, 113, 590, 896
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	2 cut(s)	38, 571
MaeI	CTAG	4 cut(s)	84, 764, 908, 1064
MaeIII	GTNAC	3 cut(s)	190, 744, 824
MalI	GATC	4 cut(s)	124, 411, 660, 1100
MboI	GATC	4 cut(s)	122, 409, 658, 1098
MboII	GAAGA	7 cut(s)	92, 95, 132, 466, 571, 632, 1027
MflI	RGATCY	2 cut(s)	122, 1098
MhlI	GDGCHC	3 cut(s)	632, 1028, 1063
MluCI	AATT	6 cut(s)	321, 378, 521, 795, 819, 956
MlyI	GAGTC	3 cut(s)	7, 429, 821
MmeI	TCCRAC	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	2 cut(s)	726, 807
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	499, 1000
MwoI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
NcoI	CCATGG	2 cut(s)	456, 800
NdeII	GATC	4 cut(s)	122, 409, 658, 1098
NlaIV	GGNNCC	5 cut(s)	115, 259, 398, 753, 988
NmeAIII	GCCGAG	1 cut(s)	1039
NmuCI	GTSAC	2 cut(s)	190, 824
NspI	RCATGY	2 cut(s)	333, 1096
PagI	TCATGA	3 cut(s)	385, 412, 682
PaqCI	CACCTGC	1 cut(s)	979
PceI	AGGCCT	1 cut(s)	315
PciI	ACATGT	2 cut(s)	329, 1092
PciSI	GCTCTTC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	769
PleI	GAGTC	3 cut(s)	7, 429, 821
PpsI	GAGTC	3 cut(s)	7, 429, 821
PscI	ACATGT	2 cut(s)	329, 1092
PspFI	CCCAGC	1 cut(s)	996
PspN4I	GGNNCC	5 cut(s)	115, 259, 398, 753, 988
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	122, 1098
PvuII	CAGCTG	2 cut(s)	499, 1000
RsaI	GTAC	2 cut(s)	678, 988
RsaNI	GTAC	2 cut(s)	677, 987
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	726, 807
SatI	GCNGC	1 cut(s)	768
Sau3AI	GATC	4 cut(s)	122, 409, 658, 1098
SchI	GAGTC	3 cut(s)	7, 429, 821
SduI	GDGCHC	3 cut(s)	632, 1028, 1063
SfaNI	GCATC	2 cut(s)	38, 571
SfcI	CTRYAG	3 cut(s)	654, 672, 1083
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	6 cut(s)	321, 378, 521, 795, 819, 956
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	1 cut(s)	831
SspMI	CTAG	4 cut(s)	84, 764, 908, 1064
StuI	AGGCCT	1 cut(s)	315
StyI	CCWWGG	3 cut(s)	456, 800, 892
TaaI	ACNGT	3 cut(s)	190, 1075, 1087
TaqII	GACCGA	1 cut(s)	1018
TasI	AATT	6 cut(s)	321, 378, 521, 795, 819, 956
Tru1I	TTAA	2 cut(s)	726, 807
Tru9I	TTAA	2 cut(s)	726, 807
TseFI	GTSAC	2 cut(s)	190, 824
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	2 cut(s)	190, 824
TspDTI	ATGAA	7 cut(s)	201, 324, 429, 466, 633, 699, 992
XagI	CCTNNNNNAGG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	2 cut(s)	333, 1096
XmiI	GTMKAC	2 cut(s)	1082, 1089
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	4 cut(s)	84, 764, 908, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.