Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

18707008 .. 18717164

Gene Structure 10157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1228900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTTTCTGGACGCTGTTGGAGGTGGCTTGCATGCCAATTTTCCAAGTTCTCATAATCAGTGTGTTGGGAGCTTTGATGGCAACTGAGTACTGGAATCTTCTCCCGTTGGACGCTCGAAAGTCCATAAACAAGGTTGTGTTTGTGGTGTTCACTCCCGCACTGGTGTTTTCAAATGTGGCCAAGACTATTACATTTGGAGACATTGTTTCATGGTGGTTTATGGTTGTCAACATCGGGCTTACCTTTCTAGTTGGAGGGATTCTTGGATGGATTGTGGTAAAGATTTTTAAACCAAAACCTTATCAGGAAGGTGTGGTAATTGCTACAGTTTCATCAGGAAACTTGGGAAACCTTCTCCTTATACTTGTCCCTGCAATATGTAACGAGGATGGGAACCCCTTTGGCGATCATAGTGTTTGTAAGACGACTGGACTCGCATACGTATCTTTTTCCATGGCGCTTGGTAATTTCTTCATTTGGACCTACAGTTACCAGCTGATACGAACCTCATCGATTAGATGGAAAGAGCTTCAAGCAGCCGAGGAAACTGAGGAGGCCTCAAAGAGGCGCAACACAGATTTGGATGCTGACGAGGAAACTCACCTTCTCAAAGGAGAGGATGAAGAGCAGGCCGCTGTGGTAGTGTCTGAAACTTCTGTAAACCAAGCTATAGTAACCCCTGATGAATCAAACATGCCATTCAGCCATAAAGTATTAGAATTCTTTCGCCAGATTTTGCATGAGTTATTGGCACCACCAACGGTTGCTGCAATTGTGGGATTCTTCGTTGGGTCAATTACGGTTATTAAGAACATAATAATTGGCGACGACGCCCCTCTGCATGTGATCGAAGACTCTATTACACAACTCGGGAACGGTACAATCCCTTGCATCACACTCATTCTTGGAGGCAATCTGATCCAAGGCTTACGCAAACCAACGATCAAAGTGCCTACCCTCCTTGGAGTGATTATTGCCAAATACATAGTAATGCCTGCAATTGGCATTGGCATTGTAACAGGAGCAGACAAACTAGGGCTTCTCCCATCTAACTCCTTGTTCCACTTTGTGCTGATGCTTCAGTTTACCCTGCCGCCTGCCATGAATATCGGTACGATGACGCAGCTGTATGATGTGGCTGAGGCAGAGTGCTCAGTGATCTTCCTGTGGACATACTTGGTTGCAGCCTTGGCACTTACTGTTTGGTCAACAATCTTCATGTGGATCTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

413

Amino Acids

45.17

Weight (kDa)

4.96

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 403	2.6e-87	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	754
AciI	CCGC	3 cut(s)	159, 636, 1097
AclWI	GGATC	2 cut(s)	916, 1235
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	1067
AcyI	GRCGYC	1 cut(s)	834
AdeI	CACNNNGTG	1 cut(s)	1072
AfaI	GTAC	3 cut(s)	92, 883, 1117
AfiI	CCNNNNNNNGG	2 cut(s)	567, 1004
AgsI	TTSAA	2 cut(s)	174, 536
AluBI	AGCT	5 cut(s)	74, 499, 532, 671, 1129
AluI	AGCT	5 cut(s)	74, 499, 532, 671, 1129
Alw21I	GWGCWC	1 cut(s)	1157
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	916, 1235
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	3 cut(s)	180, 558, 633
ApeKI	GCWGC	4 cut(s)	539, 770, 1126, 1187
ApoI	RAATTY	1 cut(s)	722
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	2 cut(s)	463, 573
AspS9I	GGNCC	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	483
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	1157
BbvCI	CCTCAGC	1 cut(s)	1143
BbvI	GCAGC	4 cut(s)	551, 757, 1138, 1199
BccI	CCATC	5 cut(s)	73, 264, 386, 516, 1057
BcgI	CGANNNNNNTGC	2 cut(s)	934, 968
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	2 cut(s)	251, 1037
BfmI	CTRYAG	3 cut(s)	327, 487, 672
BfoI	RGCGCY	1 cut(s)	464
BisI	GCNGC	6 cut(s)	540, 636, 771, 1097, 1127, 1188
BlsI	GCNGC	6 cut(s)	541, 637, 772, 1098, 1128, 1189
BmcAI	AGTACT	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	483
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	2 cut(s)	398, 756
BmsI	GCATC	3 cut(s)	577, 903, 1068
BpiI	GAAGAC	1 cut(s)	861
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
Bpu10I	CCTNAGC	1 cut(s)	1143
Bsa29I	ATCGAT	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	445
BsaHI	GRCGYC	1 cut(s)	834
BsaJI	CCNNGG	5 cut(s)	456, 543, 925, 964, 1191
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	567, 1004
Bse1I	ACTGG	3 cut(s)	98, 168, 436
BseCI	ATCGAT	1 cut(s)	515
BseDI	CCNNGG	5 cut(s)	456, 543, 925, 964, 1191
BseGI	GGATG	4 cut(s)	275, 397, 592, 628
BseLI	CCNNNNNNNGG	2 cut(s)	567, 1004
BseMII	CTCAG	4 cut(s)	78, 543, 1134, 1170
BseNI	ACTGG	3 cut(s)	98, 168, 436
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	4 cut(s)	551, 757, 1138, 1199
BshFI	GGCC	3 cut(s)	182, 560, 635
BshNI	GGYRCC	1 cut(s)	754
BshVI	ATCGAT	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	1157
BsiHKCI	CYCGRG	1 cut(s)	872
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	567, 1004
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	182, 560, 635
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	1157
Bsp143I	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	3 cut(s)	159, 636, 1097
BspANI	GGCC	3 cut(s)	182, 560, 635
BspCNI	CTCAG	4 cut(s)	79, 544, 1135, 1169
BspDI	ATCGAT	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	398, 756
BspPI	GGATC	2 cut(s)	916, 1235
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	98, 168, 436
BssECI	CCNNGG	5 cut(s)	456, 543, 925, 964, 1191
BssMI	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
BssNI	GRCGYC	1 cut(s)	834
BssT1I	CCWWGG	4 cut(s)	456, 925, 964, 1191
Bst4CI	ACNGT	6 cut(s)	331, 491, 766, 805, 881, 1204
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	834
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	5 cut(s)	31, 35, 633, 999, 1101
BstDEI	CTNAG	4 cut(s)	87, 552, 1143, 1156
BstDSI	CCRYGG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	565
BstF5I	GGATG	4 cut(s)	275, 397, 592, 628
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	463, 573
BstKTI	GATC	6 cut(s)	412, 852, 924, 948, 1164, 1230
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 1193
BstNSI	RCATGY	3 cut(s)	37, 700, 848
BstSFI	CTRYAG	3 cut(s)	327, 487, 672
BstSNI	TACGTA	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	551, 757, 1138, 1199
BstV2I	GAAGAC	1 cut(s)	861
BstX2I	RGATCY	1 cut(s)	1227
BstYI	RGATCY	1 cut(s)	1227
Bsu15I	ATCGAT	1 cut(s)	515
BsuRI	GGCC	3 cut(s)	182, 560, 635
BsuTUI	ATCGAT	1 cut(s)	515
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	275, 397, 592, 628
BtsIMutI	CAGTG	3 cut(s)	67, 161, 1164
Cac8I	GCNNGC	5 cut(s)	31, 35, 633, 999, 1101
CfoI	GCGC	2 cut(s)	463, 573
Cfr13I	GGNCC	1 cut(s)	483
ClaI	ATCGAT	1 cut(s)	515
CseI	GACGC	4 cut(s)	22, 122, 842, 1132
Csp6I	GTAC	3 cut(s)	91, 882, 1116
CviAII	CATG	8 cut(s)	34, 213, 457, 697, 743, 845, 1105, 1222
CviQI	GTAC	3 cut(s)	91, 882, 1116
DdeI	CTNAG	4 cut(s)	87, 552, 1143, 1156
DpnI	GATC	6 cut(s)	411, 851, 923, 947, 1163, 1229
DpnII	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
DraI	TTTAAA	1 cut(s)	292
DraIII	CACNNNGTG	1 cut(s)	1072
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco105I	TACGTA	1 cut(s)	445
Eco130I	CCWWGG	4 cut(s)	456, 925, 964, 1191
Eco147I	AGGCCT	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	1067
Eco88I	CYCGRG	1 cut(s)	872
EcoNI	CCTNNNNNAGG	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	722
EcoT14I	CCWWGG	4 cut(s)	456, 925, 964, 1191
ErhI	CCWWGG	4 cut(s)	456, 925, 964, 1191
FaeI	CATG	8 cut(s)	37, 216, 460, 700, 746, 848, 1108, 1225
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	8 cut(s)	33, 212, 456, 696, 742, 844, 1104, 1221
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	6 cut(s)	540, 636, 771, 1097, 1127, 1188
FokI	GGATG	4 cut(s)	282, 404, 599, 635
Fsp4HI	GCNGC	6 cut(s)	540, 636, 771, 1097, 1127, 1188
FspBI	CTAG	2 cut(s)	251, 1037
GlaI	GCGC	2 cut(s)	462, 572
GluI	GCNGC	6 cut(s)	540, 636, 771, 1097, 1127, 1188
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	3 cut(s)	182, 560, 635
HgaI	GACGC	4 cut(s)	22, 122, 842, 1132
HhaI	GCGC	2 cut(s)	463, 573
Hin1I	GRCGYC	1 cut(s)	834
Hin1II	CATG	8 cut(s)	37, 216, 460, 700, 746, 848, 1108, 1225
Hin6I	GCGC	2 cut(s)	461, 571
HinP1I	GCGC	2 cut(s)	461, 571
HincII	GTYRAC	2 cut(s)	232, 1212
HindII	GTYRAC	2 cut(s)	232, 1212
HinfI	GANTC	6 cut(s)	97, 262, 435, 689, 783, 857
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	6 cut(s)	153, 232, 664, 1089, 1173, 1212
Hpy188I	TCNGA	2 cut(s)	652, 921
Hpy188III	TCNNGA	5 cut(s)	10, 308, 339, 874, 1236
Hpy8I	GTNNAC	6 cut(s)	153, 232, 664, 1089, 1173, 1212
Hpy99I	CGWCG	2 cut(s)	833, 836
HpyAV	CCTTC	3 cut(s)	305, 365, 617
HpyCH4III	ACNGT	6 cut(s)	331, 491, 766, 805, 881, 1204
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	8 cut(s)	33, 377, 742, 773, 844, 894, 1001, 1187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 1193
HpyF3I	CTNAG	4 cut(s)	87, 552, 1143, 1156
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	834
Hsp92II	CATG	8 cut(s)	37, 216, 460, 700, 746, 848, 1108, 1225
HspAI	GCGC	2 cut(s)	461, 571
Kzo9I	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	71, 1025
Lsp1109I	GCAGC	4 cut(s)	551, 757, 1138, 1199
LweI	GCATC	3 cut(s)	577, 903, 1068
MaeI	CTAG	2 cut(s)	251, 1037
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	383, 491, 676, 1018
MalI	GATC	6 cut(s)	411, 851, 923, 947, 1163, 1229
MboI	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
MboII	GAAGA	7 cut(s)	92, 466, 638, 778, 866, 1156, 1210
MfeI	CAATTG	2 cut(s)	774, 1002
MflI	RGATCY	1 cut(s)	1227
MhlI	GDGCHC	1 cut(s)	1157
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	8 cut(s)	39, 321, 469, 722, 774, 798, 822, 1002
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	429, 851
MmeI	TCCRAC	2 cut(s)	90, 235
Mox20I	TGGCCA	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	2 cut(s)	291, 810
MslI	CAYNNNNRTG	1 cut(s)	992
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	499, 638, 1129
MunI	CAATTG	2 cut(s)	774, 1002
MwoI	GCNNNNNNNGC	2 cut(s)	80, 1193
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
NlaIII	CATG	8 cut(s)	37, 216, 460, 700, 746, 848, 1108, 1225
NlaIV	GGNNCC	2 cut(s)	398, 756
NmeAIII	GCCGAG	1 cut(s)	568
NspI	RCATGY	3 cut(s)	37, 700, 848
PaeI	GCATGC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	4 cut(s)	97, 262, 689, 783
PkrI	GCNGC	6 cut(s)	541, 637, 772, 1098, 1128, 1189
PleI	GAGTC	2 cut(s)	429, 851
PpsI	GAGTC	2 cut(s)	429, 851
Ppu21I	YACGTR	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	398, 756
PspPI	GGNCC	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	1227
PvuII	CAGCTG	2 cut(s)	499, 1129
RsaI	GTAC	3 cut(s)	92, 883, 1117
RsaNI	GTAC	3 cut(s)	91, 882, 1116
RseI	CAYNNNNRTG	1 cut(s)	992
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	291, 810
SatI	GCNGC	6 cut(s)	540, 636, 771, 1097, 1127, 1188
Sau3AI	GATC	6 cut(s)	409, 849, 921, 945, 1161, 1227
Sau96I	GGNCC	1 cut(s)	483
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	2 cut(s)	429, 851
SduI	GDGCHC	1 cut(s)	1157
SfaNI	GCATC	3 cut(s)	577, 903, 1068
SfcI	CTRYAG	3 cut(s)	327, 487, 672
SinI	GGWCC	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	992
SnaBI	TACGTA	1 cut(s)	445
SphI	GCATGC	1 cut(s)	37
Sse9I	AATT	8 cut(s)	39, 321, 469, 722, 774, 798, 822, 1002
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	3 cut(s)	159, 636, 1097
SspMI	CTAG	2 cut(s)	251, 1037
StuI	AGGCCT	1 cut(s)	560
StyI	CCWWGG	4 cut(s)	456, 925, 964, 1191
TaaI	ACNGT	6 cut(s)	331, 491, 766, 805, 881, 1204
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	118, 515, 852
TasI	AATT	8 cut(s)	39, 321, 469, 722, 774, 798, 822, 1002
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	2 cut(s)	638, 1099
TfiI	GAWTC	4 cut(s)	97, 262, 689, 783
Tru1I	TTAA	2 cut(s)	291, 810
Tru9I	TTAA	2 cut(s)	291, 810
TscAI	CASTG	3 cut(s)	67, 168, 1164
TseI	GCWGC	4 cut(s)	539, 770, 1126, 1187
TspDTI	ATGAA	7 cut(s)	201, 324, 466, 639, 702, 1121, 1210
TspRI	CASTG	3 cut(s)	67, 168, 1164
VpaK11BI	GGWCC	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	565
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	3 cut(s)	37, 700, 848
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	2 cut(s)	251, 1037
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.