Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007657

Physical Location & Seq

Genomic Coordinates Forward (+)

7664055 .. 7666522

Gene Structure 2468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGTTAACTCATGCGAGAACAAAATCTTCGTTAAACCCACTTCAACGACGATTCTTCAAGATGAAACAAGAAGTAGAAAATTCGGACAAGAGATGAAGAGGGAGAAGAGAAGAGTGTTGCGTGTGATTAACCAGAATCTCGCTGGTGCAAGAGTTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTGTCTAATAAGCAAGAAGAAGAAGAAGGATGTCAAAAGAAGAAGTTTGATTCTTTGCGTCCTTCAGTTACAAGATCTGGAGTTGAGGAAGAGACTAACAAGAAGCTGAAGCCCTCAGTTCCAAGTGCTAACGACTTCGGTGATTGTATATTTATTGATGAGGAGGAAGCTACATTGGACCTTCCAATGCCAATGTCGCTTGAGAAACCATACATTGAAGCTGATCCAATGGAAGAAGTTGAGATGGAGGATGTAACAGTGGAAGAACCGATCGTGGATATCGATGTCTTAGACTCGAAGAACTCGCTTGCGGCTGTTGAATATGTTCAAGATCTTTACGCATTTTACAGAACAATGGAGAGATTTAGTTGTGTTCCAGTAGACTATATGATGCAACAAATCGACTTAAACGAGAAGATGAGAGCAATACTAATCGACTGGTTAATCGAGGTACATGACAAGTTTGATCTGATAAACGAGACACTGTTTCTGACAGTGAATCTGATAGATAGATTCTTGTCCAAGCAAAATGTTATGAGAAAGAAGCTTCAGCTTGTAGGGTTAGTAGCTTTGCTGTTAGCTTGTAAGTATGAGGAGGTTTCGGTTCCTGTTGTCGAAGATTTAGTACTCATTTCGGACAAAGCGTATACGAGGAACGATGTTCTAGAGATGGAGAAAACAATGTTGAGTACTTTGCAATTCAATATCTCGTTACCGACACAATACCCGTTCTTGAAAAGATTCCTCAAGGCAGCTCAAGCAGACAAGAAGTGTGAGGTCTTGGCGTCGTTCTTGATCGAGCTTGCCCTTGTGGAGTACGAGATGCTTCGGTTTCCACCATCATTACTAGCTGCCACATCTGTGTACACTGCTCAATGTACACTTGATGGTTCCAGGAAATGGAACAGTACATGTGAATTCCATTGTCATTACTCTGAAGACCAGCTCATGGAATGTTCACGGAAGCTGGTGAGTCTGCATCAGAGGGCGGCGACAGGAAACTTAACAGGAGTATATAGGAAGTACAGCACAAGCAAATTTGGTTACATAGCAAAATGTGAAGCTGCACACTTTCTAGTGTCTGAGTCTCATCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

429

Amino Acids

49.24

Weight (kDa)

5.38

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	174 - 300	2.5e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	302 - 417	5.2e-38	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17620 AT4G35620 AT4G35620
fragaria_vesca	FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520
malus_domestica	MD02G1119100.v1.1 MD15G1233100.v1.1
prunus_persica	Prupe.7G180800_v2.0.a1 Prupe.7G180800_v2.0.a1
pyrus_communis	pycom02g09280 pycom15g20760
rosa_chinensis	RchiOBHm_Chr2g0097421 RchiOBHm_Chr2g0097521
rosa_multiflora	Rmu_sc0004220.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144700
rosa_rugosa	Rorug02G0066900
rosa_samantha	Rh2AG113300 Rh2BG116400 Rh2CG118400 Rh2DG117400
rosa_wichuraiana	Rw2G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1089, 1138
AccI	GTMKAC	2 cut(s)	570, 836
AciI	CCGC	2 cut(s)	500, 1178
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	3 cut(s)	80, 1106, 1226
AcuI	CTGAAG	4 cut(s)	237, 317, 722, 1146
AcyI	GRCGYC	1 cut(s)	974
AfaI	GTAC	8 cut(s)	642, 816, 880, 1007, 1055, 1069, 1099, 1214
AfiI	CCNNNNNNNGG	2 cut(s)	1089, 1138
AflIII	ACRYGT	1 cut(s)	1100
AgsI	TTSAA	7 cut(s)	45, 59, 407, 509, 518, 892, 925
AjnI	CCWGG	1 cut(s)	1082
AleI	CACNNNNGTG	1 cut(s)	1049
Alw26I	GTCTC	3 cut(s)	275, 662, 1281
AlwI	GGATC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	941, 1040, 1253
ApoI	RAATTY	3 cut(s)	80, 1106, 1226
Asp700I	GAANNNNTTC	2 cut(s)	513, 929
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	341, 1171
AvaII	GGWCC	1 cut(s)	367
BarI	GAAGNNNNNNTAC	2 cut(s)	798, 830
BbsI	GAAGAC	1 cut(s)	1134
BbvI	GCAGC	3 cut(s)	953, 1027, 1240
BccI	CCATC	4 cut(s)	427, 853, 1036, 1070
BciT130I	CCWGG	1 cut(s)	1084
BcoDI	GTCTC	3 cut(s)	275, 662, 1281
BfaI	CTAG	3 cut(s)	854, 1037, 1265
BglII	AGATCT	2 cut(s)	263, 520
BisI	GCNGC	5 cut(s)	501, 942, 1041, 1179, 1254
BlsI	GCNGC	5 cut(s)	502, 943, 1042, 1180, 1255
BmcAI	AGTACT	2 cut(s)	816, 880
Bme1390I	CCNGG	1 cut(s)	1084
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	795, 1081
BmrFI	CCNGG	1 cut(s)	1084
BmsI	GCATC	3 cut(s)	570, 1002, 1177
BpiI	GAAGAC	1 cut(s)	1134
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	3 cut(s)	410, 920, 930
Bsa29I	ATCGAT	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	974
Bsc4I	CCNNNNNNNGG	2 cut(s)	1089, 1138
Bse1I	ACTGG	2 cut(s)	566, 632
BseBI	CCWGG	1 cut(s)	1084
BseCI	ATCGAT	1 cut(s)	471
BseGI	GGATG	2 cut(s)	224, 445
BseLI	CCNNNNNNNGG	2 cut(s)	1089, 1138
BseMII	CTCAG	2 cut(s)	318, 1263
BseNI	ACTGG	2 cut(s)	566, 632
BseRI	GAGGAG	2 cut(s)	365, 797
BseXI	GCAGC	3 cut(s)	953, 1027, 1240
BsgI	GTGCAG	1 cut(s)	1239
Bsh1285I	CGRYCG	1 cut(s)	462
BshVI	ATCGAT	1 cut(s)	471
BsiEI	CGRYCG	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	1089, 1138
BsmAI	GTCTC	3 cut(s)	275, 662, 1281
Bsp1407I	TGTACA	2 cut(s)	1053, 1067
Bsp143I	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
BspACI	CCGC	2 cut(s)	500, 1178
BspCNI	CTCAG	2 cut(s)	317, 1264
BspDI	ATCGAT	1 cut(s)	471
BspLI	GGNNCC	2 cut(s)	795, 1081
BspPI	GGATC	1 cut(s)	407
BsrGI	TGTACA	2 cut(s)	1053, 1067
BsrI	ACTGG	2 cut(s)	566, 632
BssMI	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
BssNAI	GTATAC	1 cut(s)	837
BssNI	GRCGYC	1 cut(s)	974
Bst1107I	GTATAC	1 cut(s)	837
Bst2UI	CCWGG	1 cut(s)	1084
Bst4CI	ACNGT	4 cut(s)	448, 675, 685, 1097
Bst6I	CTCTTC	4 cut(s)	92, 101, 106, 273
BstACI	GRCGYC	1 cut(s)	974
BstAUI	TGTACA	2 cut(s)	1053, 1067
BstC8I	GCNNGC	2 cut(s)	498, 993
BstDEI	CTNAG	3 cut(s)	304, 478, 1272
BstF5I	GGATG	2 cut(s)	224, 445
BstKTI	GATC	6 cut(s)	266, 415, 462, 523, 658, 987
BstMAI	GTCTC	3 cut(s)	275, 662, 1281
BstMBI	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 947
BstNI	CCWGG	1 cut(s)	1084
BstNSI	RCATGY	1 cut(s)	1104
BstSCI	CCNGG	1 cut(s)	1082
BstV1I	GCAGC	3 cut(s)	953, 1027, 1240
BstV2I	GAAGAC	1 cut(s)	1134
BstX2I	RGATCY	2 cut(s)	263, 520
BstYI	RGATCY	2 cut(s)	263, 520
BstZ17I	GTATAC	1 cut(s)	837
Bsu15I	ATCGAT	1 cut(s)	471
BsuTUI	ATCGAT	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	224, 445
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	4 cut(s)	453, 671, 690, 1056
Cac8I	GCNNGC	2 cut(s)	498, 993
Cfr13I	GGNCC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	2 cut(s)	236, 963
Csp6I	GTAC	8 cut(s)	641, 815, 879, 1006, 1054, 1068, 1098, 1213
CviAII	CATG	4 cut(s)	12, 644, 1101, 1138
CviQI	GTAC	8 cut(s)	641, 815, 879, 1006, 1054, 1068, 1098, 1213
DdeI	CTNAG	3 cut(s)	304, 478, 1272
DpnI	GATC	6 cut(s)	265, 414, 461, 522, 657, 986
DpnII	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
Eam1104I	CTCTTC	4 cut(s)	92, 101, 106, 273
EarI	CTCTTC	4 cut(s)	92, 101, 106, 273
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	4 cut(s)	237, 317, 722, 1146
EcoRI	GAATTC	1 cut(s)	1106
EcoRII	CCWGG	1 cut(s)	1082
EcoRV	GATATC	1 cut(s)	469
FaeI	CATG	4 cut(s)	15, 647, 1104, 1141
FatI	CATG	4 cut(s)	11, 643, 1100, 1137
FblI	GTMKAC	2 cut(s)	570, 836
Fnu4HI	GCNGC	5 cut(s)	501, 942, 1041, 1179, 1254
FokI	GGATG	2 cut(s)	231, 452
Fsp4HI	GCNGC	5 cut(s)	501, 942, 1041, 1179, 1254
FspBI	CTAG	3 cut(s)	854, 1037, 1265
GluI	GCNGC	5 cut(s)	501, 942, 1041, 1179, 1254
GsuI	CTGGAG	1 cut(s)	288
HgaI	GACGC	2 cut(s)	236, 963
Hin1I	GRCGYC	1 cut(s)	974
Hin1II	CATG	4 cut(s)	15, 647, 1104, 1141
HincII	GTYRAC	2 cut(s)	7, 172
HindII	GTYRAC	2 cut(s)	7, 172
HindIII	AAGCTT	2 cut(s)	184, 734
HinfI	GANTC	9 cut(s)	52, 136, 239, 482, 688, 702, 930, 1162, 1274
HpaI	GTTAAC	1 cut(s)	7
HphI	GGTGA	2 cut(s)	341, 1171
Hpy166II	GTNNAC	8 cut(s)	7, 172, 571, 837, 1054, 1056, 1070, 1148
Hpy188I	TCNGA	8 cut(s)	86, 660, 681, 693, 826, 1126, 1173, 1273
Hpy188III	TCNNGA	6 cut(s)	59, 267, 518, 854, 922, 982
Hpy8I	GTNNAC	8 cut(s)	7, 172, 571, 837, 1054, 1056, 1070, 1148
Hpy99I	CGWCG	2 cut(s)	52, 979
HpyAV	CCTTC	3 cut(s)	209, 261, 380
HpyCH4III	ACNGT	4 cut(s)	448, 675, 685, 1097
HpyCH4V	TGCA	5 cut(s)	149, 583, 886, 1168, 1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 947
HpyF3I	CTNAG	3 cut(s)	304, 478, 1272
Hsp92I	GRCGYC	1 cut(s)	974
Hsp92II	CATG	4 cut(s)	15, 647, 1104, 1141
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
Lsp1109I	GCAGC	3 cut(s)	953, 1027, 1240
LweI	GCATC	3 cut(s)	570, 1002, 1177
MaeI	CTAG	3 cut(s)	854, 1037, 1265
MaeIII	GTNAC	4 cut(s)	256, 442, 900, 1232
MalI	GATC	6 cut(s)	265, 414, 461, 522, 657, 986
MboI	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
MflI	RGATCY	2 cut(s)	263, 520
MluCI	AATT	4 cut(s)	80, 887, 1106, 1226
MlyI	GAGTC	3 cut(s)	476, 1171, 1283
MroXI	GAANNNNTTC	2 cut(s)	513, 929
MseI	TTAA	7 cut(s)	6, 33, 129, 596, 632, 1193, 1288
MslI	CAYNNNNRTG	1 cut(s)	1049
MspR9I	CCNGG	1 cut(s)	1084
MvaI	CCWGG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	2 cut(s)	385, 947
NdeII	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
NlaIII	CATG	4 cut(s)	15, 647, 1104, 1141
NlaIV	GGNNCC	2 cut(s)	795, 1081
NspI	RCATGY	1 cut(s)	1104
OliI	CACNNNNGTG	1 cut(s)	1049
PciI	ACATGT	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	3 cut(s)	468, 597, 830
PdmI	GAANNNNTTC	2 cut(s)	513, 929
PfeI	GAWTC	6 cut(s)	52, 136, 239, 688, 702, 930
PflMI	CCANNNNNTGG	2 cut(s)	1089, 1138
PfoI	TCCNGGA	1 cut(s)	1082
PkrI	GCNGC	5 cut(s)	502, 943, 1042, 1180, 1255
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	3 cut(s)	476, 1170, 1282
PpsI	GAGTC	3 cut(s)	476, 1170, 1282
PscI	ACATGT	1 cut(s)	1100
Psp6I	CCWGG	1 cut(s)	1082
PspGI	CCWGG	1 cut(s)	1082
PspN4I	GGNNCC	2 cut(s)	795, 1081
PspPI	GGNCC	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	263, 520
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	8 cut(s)	642, 816, 880, 1007, 1055, 1069, 1099, 1214
RsaNI	GTAC	8 cut(s)	641, 815, 879, 1006, 1054, 1068, 1098, 1213
RseI	CAYNNNNRTG	1 cut(s)	1049
SaqAI	TTAA	7 cut(s)	6, 33, 129, 596, 632, 1193, 1288
SatI	GCNGC	5 cut(s)	501, 942, 1041, 1179, 1254
Sau3AI	GATC	6 cut(s)	263, 412, 459, 520, 655, 984
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	2 cut(s)	816, 880
SchI	GAGTC	3 cut(s)	476, 1171, 1283
ScrFI	CCNGG	1 cut(s)	1084
SfaNI	GCATC	3 cut(s)	570, 1002, 1177
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	1049
SmlI	CTYRAG	3 cut(s)	389, 935, 945
SmoI	CTYRAG	3 cut(s)	389, 935, 945
Sse9I	AATT	4 cut(s)	80, 887, 1106, 1226
SsiI	CCGC	2 cut(s)	500, 1178
SspMI	CTAG	3 cut(s)	854, 1037, 1265
StyD4I	CCNGG	1 cut(s)	1082
TaaI	ACNGT	4 cut(s)	448, 675, 685, 1097
TaqI	TCGA	7 cut(s)	471, 485, 591, 624, 636, 804, 987
TasI	AATT	4 cut(s)	80, 887, 1106, 1226
TatI	WGTACW	6 cut(s)	814, 878, 1053, 1067, 1097, 1212
TauI	GCSGC	2 cut(s)	503, 1181
TfiI	GAWTC	6 cut(s)	52, 136, 239, 688, 702, 930
Tru1I	TTAA	7 cut(s)	6, 33, 129, 596, 632, 1193, 1288
Tru9I	TTAA	7 cut(s)	6, 33, 129, 596, 632, 1193, 1288
TscAI	CASTG	4 cut(s)	453, 678, 690, 1063
TseI	GCWGC	3 cut(s)	941, 1040, 1253
TspDTI	ATGAA	2 cut(s)	78, 110
TspGWI	ACGGA	1 cut(s)	1165
TspRI	CASTG	4 cut(s)	453, 678, 690, 1063
Van91I	CCANNNNNTGG	2 cut(s)	1089, 1138
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	3 cut(s)	80, 1106, 1226
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	1104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmiI	GTMKAC	2 cut(s)	570, 836
XmnI	GAANNNNTTC	2 cut(s)	513, 929
XspI	CTAG	3 cut(s)	854, 1037, 1265
ZrmI	AGTACT	2 cut(s)	816, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.