MD02G1119100.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
9656643 .. 9660139
3497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1119100.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGTTATTTCTGATGAGAACCGTTCTAATCTGATCAGACCCACAAATATGCAAGGACTAGAGGTGGGTACCGGCAAGCTTGGACAGCAACAGATTAGGCAGACCAGGAGGGCTTTAGGAGTCATTAATCAGAGCTTGTTAGGAGCTCCAGCATACCCTTGTGTTGTTAACAAGAGACCCTTTACACAAAAACATGAAGTTTATGAGAAGAAGCAGGCAGATCCAGCGCACAGACCAATCACCAGGAAGTTTGCTGCACAAATTAGCAATCAGCCATCTTGTTTCGAGGAAGTCAAGATCCCCAAGGTGCCAAACAAAGCAGATGAAACCACCAACTCAGCTGGTTTTGGAGATTGCATTAGTATATTCGTAGACGAAGAATTCAAGTCCCCTGAAGGCCAAGCAGAAGCAATGACGGAGGACGCGGAGCCCATGTTCTTAGAGCAAGAAGAATCAACGCTGGAAGAAGCAAATGATACGAAAGAGGTTGAAATGGAGGACATTGTGGAAGAGCCTCTTGTGGATATTGACGGTGGCGATTTGAAGAATCCGCTTGCAGTTGTAGACTATGTTGAGGATCTCTATGCTTACTATAGGAGAATGGAGGGTTTTAGCTGTGCCCCACCTAACTATTTGGAGCAACAATGTGACATCAATGAGAAGATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCACGACAAGTTTGAGCTACTGAAGGAGACATTGTTTCTTACTGTGAACCTTATAGACAGATTTTTATCCCAGCATACGGTTGTAAGAAAGAAACTTCAGTTGGTTGGTCTGGTTGCCATGCTTTTAGCATGCAAATATGAGGAGGTTTCTGTTCCCATCGTCGGGGATTTGATTCTTATATCGGATAAAGCTTACACAAGGAATGATGTCCTGGAAATGGAGAACCTGATGCTCAACACATTGCAGTTTAACATGTCAGTTCCAACGCCGTATGTTTTCATGAATAGATTCCTCAAGGCTGCTCAATGCGACAAGAAGATTGAACTCCTATCGTTCTTCTTAATCGAGCTCTCTCTCGTGGAGTACCAAATGCTTAAGTTTCCACCATCCCTGTTAGCTGCTGCTGCAGTCTACGCTGCTCAATGCACTCTTCACGGGTTCAAGCAATGGAGCAGCACCTGCGAGTGGCACACAAACTACTCAGAAGAACAGCTCTTAGAATGCTCAAGTTTGATGGTGGGATTCCACCAGAAGGCGTCAACGGGAAGGCTGACAGGGGTGCACAGGAAGTACAGTACATCCAAGTTTAGCTACATTGCAAATTCAGAACCAGCGAAGTGTCTGGTGCAGAATCAACAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

50.79

Weight (kDa)

5.03

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 193 - 319 5.4e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 321 - 437 1.8e-38 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1166
Acc36I ACCTGC 1 cut(s) 1166
Acc65I GGTACC 1 cut(s) 68
AccB1I GGYRCC 2 cut(s) 68, 307
AccI GTMKAC 3 cut(s) 372, 564, 1110
AccII CGCG 1 cut(s) 425
AciI CCGC 2 cut(s) 425, 551
AclWI GGATC 3 cut(s) 215, 292, 585
AcsI RAATTY 2 cut(s) 380, 1300
AcuI CTGAAG 3 cut(s) 414, 740, 779
AcyI GRCGYC 1 cut(s) 1235
AfaI GTAC 4 cut(s) 70, 1064, 1271, 1276
AfiI CCNNNNNNNGG 6 cut(s) 775, 860, 861, 916, 1164, 1231
AflII CTTAAG 1 cut(s) 1073
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 5 cut(s) 385, 491, 544, 1022, 1141
AjnI CCWGG 3 cut(s) 104, 242, 909
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
Alw21I GWGCWC 4 cut(s) 148, 702, 1050, 1263
Alw26I GTCTC 2 cut(s) 169, 719
Alw44I GTGCAC 2 cut(s) 698, 1259
AlwI GGATC 3 cut(s) 215, 292, 585
AlwNI CAGNNNCTG 1 cut(s) 1158
AoxI GGCC 1 cut(s) 397
ApaLI GTGCAC 2 cut(s) 698, 1259
ApeKI GCWGC 7 cut(s) 254, 998, 1097, 1100, 1103, 1115, 1152
ApoI RAATTY 2 cut(s) 380, 1300
AseI ATTAAT 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 986
Asp718I GGTACC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 232
BaeGI GKGCMC 3 cut(s) 622, 702, 1263
BanI GGYRCC 2 cut(s) 68, 307
BanII GRGCYC 3 cut(s) 148, 432, 1050
BauI CACGAG 1 cut(s) 1055
Bbv12I GWGCWC 4 cut(s) 148, 702, 1050, 1263
BbvI GCAGC 7 cut(s) 241, 985, 1084, 1087, 1090, 1102, 1164
BccI CCATC 4 cut(s) 283, 863, 1093, 1207
BceAI ACGGC 1 cut(s) 952
BciT130I CCWGG 3 cut(s) 106, 244, 911
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 169, 719
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 3 cut(s) 592, 1104, 1340
BfrI CTTAAG 1 cut(s) 1073
BfuAI ACCTGC 1 cut(s) 1166
BisI GCNGC 7 cut(s) 255, 999, 1098, 1101, 1104, 1116, 1153
BlsI GCNGC 7 cut(s) 256, 1000, 1099, 1102, 1105, 1117, 1154
Bme1390I CCNGG 3 cut(s) 106, 244, 911
BmiI GGNNCC 3 cut(s) 70, 309, 429
BmrFI CCNGG 3 cut(s) 106, 244, 911
BmsI GCATC 1 cut(s) 918
BpmI CTGGAG 1 cut(s) 132
BpuEI CTTGAG 2 cut(s) 977, 1189
BsaBI GATNNNNATC 1 cut(s) 763
BsaHI GRCGYC 1 cut(s) 1235
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 4 cut(s) 419, 449, 716, 746
Bsc4I CCNNNNNNNGG 6 cut(s) 775, 860, 861, 916, 1164, 1231
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 689
Bse3DI GCAATG 4 cut(s) 417, 938, 1151, 1293
Bse8I GATNNNNATC 1 cut(s) 763
BseBI CCWGG 3 cut(s) 106, 244, 911
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 1085, 1277
BseJI GATNNNNATC 1 cut(s) 763
BseLI CCNNNNNNNGG 6 cut(s) 775, 860, 861, 916, 1164, 1231
BseMI GCAATG 4 cut(s) 417, 938, 1151, 1293
BseMII CTCAG 2 cut(s) 351, 1194
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 1 cut(s) 854
BseSI GKGCMC 3 cut(s) 622, 702, 1263
BseXI GCAGC 7 cut(s) 241, 985, 1084, 1087, 1090, 1102, 1164
BseYI CCCAGC 1 cut(s) 768
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 1 cut(s) 399
BshNI GGYRCC 2 cut(s) 68, 307
BsiHKAI GWGCWC 4 cut(s) 148, 702, 1050, 1263
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 6 cut(s) 775, 860, 861, 916, 1164, 1231
BsmAI GTCTC 2 cut(s) 169, 719
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 1205
BsnI GGCC 1 cut(s) 399
Bso31I GGTCTC 1 cut(s) 169
Bsp1286I GDGCHC 6 cut(s) 148, 432, 622, 702, 1050, 1263
Bsp143I GATC 4 cut(s) 33, 220, 297, 577
BspACI CCGC 2 cut(s) 425, 551
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 2 cut(s) 350, 1193
BspFNI CGCG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 978
BspLI GGNNCC 3 cut(s) 70, 309, 429
BspMAI CTGCAG 1 cut(s) 1108
BspMI ACCTGC 1 cut(s) 1166
BspPI GGATC 3 cut(s) 215, 292, 585
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 2 cut(s) 68, 307
BspTI CTTAAG 1 cut(s) 1073
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 4 cut(s) 417, 938, 1151, 1293
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 4 cut(s) 33, 220, 297, 577
BssNI GRCGYC 1 cut(s) 1235
BssSI CACGAG 1 cut(s) 1055
BssT1I CCWWGG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 1055
Bst2UI CCWGG 3 cut(s) 106, 244, 911
Bst4CI ACNGT 5 cut(s) 23, 533, 742, 778, 1274
Bst6I CTCTTC 2 cut(s) 504, 1134
BstACI GRCGYC 1 cut(s) 1235
BstAFI CTTAAG 1 cut(s) 1073
BstAPI GCANNNNNTGC 1 cut(s) 1158
BstC8I GCNNGC 4 cut(s) 77, 216, 555, 829
BstDEI CTNAG 4 cut(s) 337, 439, 1180, 1195
BstF5I GGATG 2 cut(s) 1085, 1277
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 4 cut(s) 36, 223, 300, 580
BstMAI GTCTC 2 cut(s) 169, 719
BstMBI GATC 4 cut(s) 33, 220, 297, 577
BstMWI GCNNNNNNNGC 5 cut(s) 85, 224, 1103, 1112, 1158
BstNI CCWGG 3 cut(s) 106, 244, 911
BstNSI RCATGY 2 cut(s) 831, 955
BstSCI CCNGG 3 cut(s) 104, 242, 909
BstSFI CTRYAG 3 cut(s) 592, 1104, 1340
BstSLI GKGCMC 3 cut(s) 622, 702, 1263
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 7 cut(s) 241, 985, 1084, 1087, 1090, 1102, 1164
BstX2I RGATCY 3 cut(s) 220, 297, 577
BstYI RGATCY 3 cut(s) 220, 297, 577
BsuRI GGCC 1 cut(s) 399
BtsCI GGATG 2 cut(s) 1085, 1277
BveI ACCTGC 1 cut(s) 1166
Cac8I GCNNGC 4 cut(s) 77, 216, 555, 829
CaiI CAGNNNCTG 1 cut(s) 1158
CciI TCATGA 1 cut(s) 978
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 71
CseI GACGC 2 cut(s) 431, 1224
Csp6I GTAC 4 cut(s) 69, 1063, 1270, 1275
CviAII CATG 6 cut(s) 194, 433, 817, 828, 952, 979
CviQI GTAC 4 cut(s) 69, 1063, 1270, 1275
DdeI CTNAG 4 cut(s) 337, 439, 1180, 1195
DpnI GATC 4 cut(s) 35, 222, 299, 579
DpnII GATC 4 cut(s) 33, 220, 297, 577
Eam1104I CTCTTC 2 cut(s) 504, 1134
EarI CTCTTC 2 cut(s) 504, 1134
Ecl136II GAGCTC 2 cut(s) 146, 1048
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 3 cut(s) 148, 432, 1050
Eco31I GGTCTC 1 cut(s) 169
Eco53kI GAGCTC 2 cut(s) 146, 1048
Eco57I CTGAAG 3 cut(s) 414, 740, 779
EcoICRI GAGCTC 2 cut(s) 146, 1048
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 3 cut(s) 104, 242, 909
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 3 cut(s) 148, 432, 1050
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 6 cut(s) 197, 436, 820, 831, 955, 982
FalI AAGNNNNNCTT 4 cut(s) 164, 196, 501, 533
FaqI GGGAC 1 cut(s) 373
FatI CATG 6 cut(s) 193, 432, 816, 827, 951, 978
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 3 cut(s) 372, 564, 1110
Fnu4HI GCNGC 7 cut(s) 255, 999, 1098, 1101, 1104, 1116, 1153
FokI GGATG 2 cut(s) 1072, 1264
FriOI GRGCYC 3 cut(s) 148, 432, 1050
Fsp4HI GCNGC 7 cut(s) 255, 999, 1098, 1101, 1104, 1116, 1153
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 228
GluI GCNGC 7 cut(s) 255, 999, 1098, 1101, 1104, 1116, 1153
GsaI CCCAGC 1 cut(s) 772
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 399
HapII CCGG 1 cut(s) 72
HgaI GACGC 2 cut(s) 431, 1224
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 1235
Hin1II CATG 6 cut(s) 197, 436, 820, 831, 955, 982
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 2 cut(s) 169, 1239
HindII GTYRAC 2 cut(s) 169, 1239
HindIII AAGCTT 2 cut(s) 77, 888
HinfI GANTC 7 cut(s) 120, 452, 547, 871, 987, 1221, 1330
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 8 cut(s) 169, 373, 565, 700, 745, 1111, 1239, 1261
Hpy188I TCNGA 7 cut(s) 13, 33, 38, 132, 883, 1183, 1306
Hpy188III TCNNGA 2 cut(s) 295, 979
Hpy8I GTNNAC 8 cut(s) 169, 373, 565, 700, 745, 1111, 1239, 1261
Hpy99I CGWCG 1 cut(s) 863
HpyAV CCTTC 4 cut(s) 389, 715, 1225, 1239
HpyCH4III ACNGT 5 cut(s) 23, 533, 742, 778, 1274
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 224, 1103, 1112, 1158
HpyF3I CTNAG 4 cut(s) 337, 439, 1180, 1195
Hsp92I GRCGYC 1 cut(s) 1235
Hsp92II CATG 6 cut(s) 197, 436, 820, 831, 955, 982
HspAI GCGC 1 cut(s) 227
KpnI GGTACC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 33
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 4 cut(s) 33, 220, 297, 577
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 5 cut(s) 143, 151, 427, 637, 1149
Lsp1109I GCAGC 7 cut(s) 241, 985, 1084, 1087, 1090, 1102, 1164
LweI GCATC 1 cut(s) 918
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 647
MalI GATC 4 cut(s) 35, 222, 299, 579
MboI GATC 4 cut(s) 33, 220, 297, 577
MflI RGATCY 3 cut(s) 220, 297, 577
MhlI GDGCHC 6 cut(s) 148, 432, 622, 702, 1050, 1263
MluCI AATT 4 cut(s) 261, 380, 678, 1300
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 986
MroXI GAANNNNTTC 1 cut(s) 986
MseI TTAA 5 cut(s) 126, 168, 948, 1040, 1074
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 1073
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 3 cut(s) 106, 244, 911
Mva1269I GAATGC 1 cut(s) 1205
MvaI CCWGG 3 cut(s) 106, 244, 911
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 5 cut(s) 85, 224, 1103, 1112, 1158
NdeII GATC 4 cut(s) 33, 220, 297, 577
NlaIII CATG 6 cut(s) 197, 436, 820, 831, 955, 982
NlaIV GGNNCC 3 cut(s) 70, 309, 429
NmuCI GTSAC 1 cut(s) 647
NspI RCATGY 2 cut(s) 831, 955
PaeI GCATGC 1 cut(s) 831
PagI TCATGA 1 cut(s) 978
PaqCI CACCTGC 1 cut(s) 1166
PciI ACATGT 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 504
PctI GAATGC 1 cut(s) 1205
PdmI GAANNNNTTC 1 cut(s) 986
PfeI GAWTC 6 cut(s) 452, 547, 871, 987, 1221, 1330
PfoI TCCNGGA 1 cut(s) 909
PkrI GCNGC 7 cut(s) 256, 1000, 1099, 1102, 1105, 1117, 1154
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 951
PshBI ATTAAT 1 cut(s) 126
Psp124BI GAGCTC 2 cut(s) 148, 1050
Psp6I CCWGG 3 cut(s) 104, 242, 909
PspFI CCCAGC 1 cut(s) 768
PspGI CCWGG 3 cut(s) 104, 242, 909
PspN4I GGNNCC 3 cut(s) 70, 309, 429
PstI CTGCAG 1 cut(s) 1108
PstNI CAGNNNCTG 1 cut(s) 1158
PsuI RGATCY 3 cut(s) 220, 297, 577
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 4 cut(s) 70, 1064, 1271, 1276
RsaNI GTAC 4 cut(s) 69, 1063, 1270, 1275
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 2 cut(s) 148, 1050
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 5 cut(s) 126, 168, 948, 1040, 1074
SatI GCNGC 7 cut(s) 255, 999, 1098, 1101, 1104, 1116, 1153
Sau3AI GATC 4 cut(s) 33, 220, 297, 577
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 3 cut(s) 106, 244, 911
SduI GDGCHC 6 cut(s) 148, 432, 622, 702, 1050, 1263
SfaNI GCATC 1 cut(s) 918
SfcI CTRYAG 3 cut(s) 592, 1104, 1340
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 3 cut(s) 992, 1073, 1204
SmoI CTYRAG 3 cut(s) 992, 1073, 1204
SphI GCATGC 1 cut(s) 831
Sse9I AATT 4 cut(s) 261, 380, 678, 1300
SsiI CCGC 2 cut(s) 425, 551
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 2 cut(s) 148, 1050
StyD4I CCNGG 3 cut(s) 104, 242, 909
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 5 cut(s) 23, 533, 742, 778, 1274
TaqI TCGA 2 cut(s) 285, 1044
TasI AATT 4 cut(s) 261, 380, 678, 1300
TatI WGTACW 2 cut(s) 1269, 1274
TfiI GAWTC 6 cut(s) 452, 547, 871, 987, 1221, 1330
Tru1I TTAA 5 cut(s) 126, 168, 948, 1040, 1074
Tru9I TTAA 5 cut(s) 126, 168, 948, 1040, 1074
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 7 cut(s) 254, 998, 1097, 1100, 1103, 1115, 1152
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 4 cut(s) 210, 339, 967, 995
TspGWI ACGGA 1 cut(s) 431
Vha464I CTTAAG 1 cut(s) 1073
VneI GTGCAC 2 cut(s) 698, 1259
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 2 cut(s) 380, 1300
XceI RCATGY 2 cut(s) 831, 955
XmiI GTMKAC 3 cut(s) 372, 564, 1110
XmnI GAANNNNTTC 1 cut(s) 986
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.