Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007657

Physical Location & Seq

Genomic Coordinates Forward (+)

10130334 .. 10133201

Gene Structure 2868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG113300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGTTATTTCTGATGAGAACTGTACTAATCTGGTCAGACCCACAAATGTTCAAGGGGGAGTAGAAATGGGTAACAGGAAGATTGGACATAACAGGAGGGCATTGGGAGTTATTAATCAGAGTCTAATTGGAGCTAAGCCTTACCCTTGTGTTGTTAACAAGAGAGGCTTTCCTGGAAAGCACGAGATCTGTGAAAAGAAGCAGGCAGATCCGGCGCATAGACCGATTACAAGGAAGTTTGCTGCACAAATTGGAAGCACTCAGCAATTGAGTCAAGAGGAAATTAAGAAACCCTCAGATAGTTTTGGAGATTGTATATTCATAGATGAGGAATTCAAGTCACCTGAAGACCAGGCTGACCAGCCAGAGCCCATGTTCTTAGAACAAGCAGAAACAATGCCTAATGAAGCCAATGTGAAGGAGGTTGAAATGGAGGATATTGTGGAGGAGCCACTTGTGGACATTGATAGCAGCGATTTAAAGAACCCACTAGCGGTTGTGGAGTATGTTGAGGATCTTTATACTTATTACAGGAAAATGGAGGGTTTTAGCTGTGTCCCACCTGATTATCTGGAACAACAATTTGACATCAATGAGAAGATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCACGACAAGTTCGAGCTCCTGGACGAGACATTGTTTCTTACTGTTAATCTTATAGATAGATTTTTATCCCAGCAAACAGTGGTAAGAAAGAAACTTCAGTTAGTTGGTCTGGTTGCTATGCTTTTAGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTTGTGGGCGATTTAATCCTTATATCCGATAAGGCTTACACAAGGAAGGAAATCCTGGAAATGGAGAGCTTGATCCTCAACACATTGCAATTTAACATGTCAGTTCCAACACCGTATGTTTTCATGAAAAGGTTCCTCAAGGCTGCTCAATCTGACAAAAAGCTTGAACTTTTATCCTTCTTCTTGATCGAGCTCTCTCTCGTGGAGTACGAGATGCTTAAGTTCTCGCCATCTTTGTTGGCTGCTAGTGCAGTCTACGCTGCTCAGTGTACTCTTTATGGTTTCAAGCAGTGGAGTAGAACCTGTGAGTGGCACACAAACTACTCGGAAGATCAGCTTTTAGAATGTACAAGTTTGATGGTTGGTTTCCACCAAAAGGCAGCAACAGGGAAACTCACAGGGGTACATAGGAAGTTCTGTACATCCAAGTTTGGCTTCATTGCGAATTGTGAACCAGCAAAGTTTCTCTTACAGACCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

425

Amino Acids

48.48

Weight (kDa)

5.11

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	172 - 298	5.6e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	300 - 416	1.2e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17620 AT4G35620 AT4G35620
fragaria_vesca	FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520
malus_domestica	MD02G1119100.v1.1 MD15G1233100.v1.1
prunus_persica	Prupe.7G180800_v2.0.a1 Prupe.7G180800_v2.0.a1
pyrus_communis	pycom02g09280 pycom15g20760
rosa_chinensis	RchiOBHm_Chr2g0097421 RchiOBHm_Chr2g0097521
rosa_multiflora	Rmu_sc0004220.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144700
rosa_rugosa	Rorug02G0066900
rosa_samantha	Rh2AG113300 Rh2BG116400 Rh2CG118400 Rh2DG117400
rosa_wichuraiana	Rw2G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1047
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	3 cut(s)	203, 522, 859
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	366, 716
AfaI	GTAC	6 cut(s)	25, 1001, 1063, 1141, 1197, 1213
AfiI	CCNNNNNNNGG	5 cut(s)	493, 797, 853, 1101, 1168
AflII	CTTAAG	1 cut(s)	1010
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	5 cut(s)	53, 337, 428, 959, 1078
AjnI	CCWGG	4 cut(s)	172, 351, 654, 846
AjuI	GAANNNNNNNTTGG	2 cut(s)	1211, 1243
AluBI	AGCT	7 cut(s)	134, 552, 652, 861, 955, 985, 1129
AluI	AGCT	7 cut(s)	134, 552, 652, 861, 955, 985, 1129
Alw21I	GWGCWC	3 cut(s)	639, 654, 987
Alw26I	GTCTC	1 cut(s)	656
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	3 cut(s)	203, 522, 859
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	6 cut(s)	242, 471, 935, 1034, 1052, 1172
ApoI	RAATTY	1 cut(s)	332
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	639
BanII	GRGCYC	3 cut(s)	372, 654, 987
BauI	CACGAG	2 cut(s)	182, 992
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	3 cut(s)	639, 654, 987
BbvI	GCAGC	6 cut(s)	229, 483, 922, 1021, 1039, 1184
BccI	CCATC	2 cut(s)	1030, 1144
BciT130I	CCWGG	4 cut(s)	174, 353, 656, 848
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	491, 1038
BfmI	CTRYAG	1 cut(s)	1274
BfrI	CTTAAG	1 cut(s)	1010
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	6 cut(s)	243, 472, 936, 1035, 1053, 1173
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	6 cut(s)	244, 473, 937, 1036, 1054, 1174
Bme1390I	CCNGG	4 cut(s)	174, 353, 656, 848
BmiI	GGNNCC	2 cut(s)	450, 926
BmrFI	CCNGG	4 cut(s)	174, 353, 656, 848
BmsI	GCATC	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	914
BsaBI	GATNNNNATC	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	5 cut(s)	493, 797, 853, 1101, 1168
Bse1I	ACTGG	1 cut(s)	626
Bse3DI	GCAATG	2 cut(s)	875, 1230
Bse8I	GATNNNNATC	1 cut(s)	700
BseBI	CCWGG	4 cut(s)	174, 353, 656, 848
BseGI	GGATG	1 cut(s)	1214
BseJI	GATNNNNATC	1 cut(s)	700
BseLI	CCNNNNNNNGG	5 cut(s)	493, 797, 853, 1101, 1168
BseMI	GCAATG	2 cut(s)	875, 1230
BseMII	CTCAG	3 cut(s)	275, 309, 1070
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	6 cut(s)	229, 483, 922, 1021, 1039, 1184
BseYI	CCCAGC	1 cut(s)	705
BsgI	GTGCAG	2 cut(s)	228, 1062
BsiHKAI	GWGCWC	3 cut(s)	639, 654, 987
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	5 cut(s)	493, 797, 853, 1101, 1168
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	542
Bsp1286I	GDGCHC	4 cut(s)	372, 639, 654, 987
Bsp1407I	TGTACA	2 cut(s)	1139, 1211
Bsp143I	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	494
BspCNI	CTCAG	3 cut(s)	274, 308, 1069
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	450, 926
BspPI	GGATC	3 cut(s)	203, 522, 859
BspTI	CTTAAG	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	875, 1230
BsrGI	TGTACA	2 cut(s)	1139, 1211
BsrI	ACTGG	1 cut(s)	626
BssMI	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
BssSI	CACGAG	2 cut(s)	182, 992
Bst2BI	CACGAG	2 cut(s)	182, 992
Bst2UI	CCWGG	4 cut(s)	174, 353, 656, 848
Bst4CI	ACNGT	4 cut(s)	23, 679, 715, 906
BstAFI	CTTAAG	1 cut(s)	1010
BstAUI	TGTACA	2 cut(s)	1139, 1211
BstC8I	GCNNGC	2 cut(s)	204, 766
BstDEI	CTNAG	5 cut(s)	135, 261, 295, 379, 1056
BstF5I	GGATG	1 cut(s)	1214
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	6 cut(s)	189, 211, 517, 867, 981, 1126
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 1040, 1049
BstNI	CCWGG	4 cut(s)	174, 353, 656, 848
BstNSI	RCATGY	2 cut(s)	768, 892
BstSCI	CCNGG	4 cut(s)	172, 351, 654, 846
BstSFI	CTRYAG	1 cut(s)	1274
BstSLI	GKGCMC	1 cut(s)	639
BstV1I	GCAGC	6 cut(s)	229, 483, 922, 1021, 1039, 1184
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	186, 208, 514
BstYI	RGATCY	3 cut(s)	186, 208, 514
BtsCI	GGATG	1 cut(s)	1214
BtsI	GCAGTG	1 cut(s)	1088
BtsIMutI	CAGTG	3 cut(s)	720, 1064, 1088
Cac8I	GCNNGC	2 cut(s)	204, 766
CciI	TCATGA	1 cut(s)	915
CfoI	GCGC	1 cut(s)	217
Csp6I	GTAC	6 cut(s)	24, 1000, 1062, 1140, 1196, 1212
CviAII	CATG	4 cut(s)	373, 765, 889, 916
CviQI	GTAC	6 cut(s)	24, 1000, 1062, 1140, 1196, 1212
DdeI	CTNAG	5 cut(s)	135, 261, 295, 379, 1056
DpnI	GATC	6 cut(s)	188, 210, 516, 866, 980, 1125
DpnII	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
DraI	TTTAAA	1 cut(s)	480
Ecl136II	GAGCTC	2 cut(s)	652, 985
Eco24I	GRGCYC	3 cut(s)	372, 654, 987
Eco53kI	GAGCTC	2 cut(s)	652, 985
Eco57I	CTGAAG	2 cut(s)	366, 716
EcoICRI	GAGCTC	2 cut(s)	652, 985
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	4 cut(s)	172, 351, 654, 846
EcoT38I	GRGCYC	3 cut(s)	372, 654, 987
FaeI	CATG	4 cut(s)	376, 768, 892, 919
FalI	AAGNNNNNCTT	8 cut(s)	152, 184, 1113, 1145, 1211, 1243, 1244, 1276
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	4 cut(s)	372, 764, 888, 915
FblI	GTMKAC	1 cut(s)	1047
Fnu4HI	GCNGC	6 cut(s)	243, 472, 936, 1035, 1053, 1173
FokI	GGATG	1 cut(s)	1201
FriOI	GRGCYC	3 cut(s)	372, 654, 987
Fsp4HI	GCNGC	6 cut(s)	243, 472, 936, 1035, 1053, 1173
FspBI	CTAG	2 cut(s)	491, 1038
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	6 cut(s)	243, 472, 936, 1035, 1053, 1173
GsaI	CCCAGC	1 cut(s)	709
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	4 cut(s)	376, 768, 892, 919
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	953
HinfI	GANTC	2 cut(s)	121, 271
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	6 cut(s)	157, 460, 637, 1048, 1062, 1244
Hpy188I	TCNGA	7 cut(s)	13, 38, 120, 298, 820, 946, 1120
Hpy188III	TCNNGA	4 cut(s)	275, 572, 916, 976
Hpy8I	GTNNAC	6 cut(s)	157, 460, 637, 1048, 1062, 1244
HpyAV	CCTTC	3 cut(s)	412, 832, 979
HpyCH4III	ACNGT	4 cut(s)	23, 679, 715, 906
HpyCH4V	TGCA	5 cut(s)	245, 637, 768, 880, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 1040, 1049
HpyF3I	CTNAG	5 cut(s)	135, 261, 295, 379, 1056
Hsp92II	CATG	4 cut(s)	376, 768, 892, 919
HspAI	GCGC	1 cut(s)	215
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
LmnI	GCTCC	3 cut(s)	131, 448, 657
Lsp1109I	GCAGC	6 cut(s)	229, 483, 922, 1021, 1039, 1184
LweI	GCATC	1 cut(s)	996
MaeI	CTAG	2 cut(s)	491, 1038
MaeIII	GTNAC	2 cut(s)	71, 339
MalI	GATC	6 cut(s)	188, 210, 516, 866, 980, 1125
MboI	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
MboII	GAAGA	5 cut(s)	91, 359, 610, 964, 1133
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	3 cut(s)	186, 208, 514
MhlI	GDGCHC	4 cut(s)	372, 639, 654, 987
MluCI	AATT	9 cut(s)	126, 249, 266, 282, 332, 581, 615, 881, 1237
MlyI	GAGTC	2 cut(s)	130, 280
MmeI	TCCRAC	1 cut(s)	923
MroXI	GAANNNNTTC	1 cut(s)	923
MseI	TTAA	8 cut(s)	114, 156, 285, 479, 681, 806, 885, 1011
MspCI	CTTAAG	1 cut(s)	1010
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	4 cut(s)	174, 353, 656, 848
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	4 cut(s)	174, 353, 656, 848
MwoI	GCNNNNNNNGC	3 cut(s)	212, 1040, 1049
NdeII	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
NlaIII	CATG	4 cut(s)	376, 768, 892, 919
NlaIV	GGNNCC	2 cut(s)	450, 926
NmuCI	GTSAC	1 cut(s)	339
NspI	RCATGY	2 cut(s)	768, 892
PaeI	GCATGC	1 cut(s)	768
PagI	TCATGA	1 cut(s)	915
PciI	ACATGT	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	2 cut(s)	645, 999
PdmI	GAANNNNTTC	1 cut(s)	923
PfoI	TCCNGGA	3 cut(s)	172, 654, 846
PkrI	GCNGC	6 cut(s)	244, 473, 937, 1036, 1054, 1174
PleI	GAGTC	2 cut(s)	129, 279
PpsI	GAGTC	2 cut(s)	129, 279
PscI	ACATGT	1 cut(s)	888
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	2 cut(s)	654, 987
Psp6I	CCWGG	4 cut(s)	172, 351, 654, 846
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	4 cut(s)	172, 351, 654, 846
PspN4I	GGNNCC	2 cut(s)	450, 926
PsuI	RGATCY	3 cut(s)	186, 208, 514
RsaI	GTAC	6 cut(s)	25, 1001, 1063, 1141, 1197, 1213
RsaNI	GTAC	6 cut(s)	24, 1000, 1062, 1140, 1196, 1212
SacI	GAGCTC	2 cut(s)	654, 987
SaqAI	TTAA	8 cut(s)	114, 156, 285, 479, 681, 806, 885, 1011
SatI	GCNGC	6 cut(s)	243, 472, 936, 1035, 1053, 1173
Sau3AI	GATC	6 cut(s)	186, 208, 514, 864, 978, 1123
SchI	GAGTC	2 cut(s)	130, 280
ScrFI	CCNGG	4 cut(s)	174, 353, 656, 848
SduI	GDGCHC	4 cut(s)	372, 639, 654, 987
SfaNI	GCATC	1 cut(s)	996
SfcI	CTRYAG	1 cut(s)	1274
SmlI	CTYRAG	2 cut(s)	929, 1010
SmoI	CTYRAG	2 cut(s)	929, 1010
SphI	GCATGC	1 cut(s)	768
Sse9I	AATT	9 cut(s)	126, 249, 266, 282, 332, 581, 615, 881, 1237
SsiI	CCGC	1 cut(s)	494
SspMI	CTAG	2 cut(s)	491, 1038
SstI	GAGCTC	2 cut(s)	654, 987
StyD4I	CCNGG	4 cut(s)	172, 351, 654, 846
TaaI	ACNGT	4 cut(s)	23, 679, 715, 906
TaqI	TCGA	2 cut(s)	648, 981
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	9 cut(s)	126, 249, 266, 282, 332, 581, 615, 881, 1237
TatI	WGTACW	4 cut(s)	23, 1061, 1139, 1211
Tru1I	TTAA	8 cut(s)	114, 156, 285, 479, 681, 806, 885, 1011
Tru9I	TTAA	8 cut(s)	114, 156, 285, 479, 681, 806, 885, 1011
TscAI	CASTG	3 cut(s)	720, 1064, 1088
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	6 cut(s)	242, 471, 935, 1034, 1052, 1172
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	5 cut(s)	310, 420, 904, 932, 1219
TspRI	CASTG	3 cut(s)	720, 1064, 1088
Vha464I	CTTAAG	1 cut(s)	1010
VneI	GTGCAC	1 cut(s)	635
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	768, 892
XmiI	GTMKAC	1 cut(s)	1047
XmnI	GAANNNNTTC	1 cut(s)	923
XspI	CTAG	2 cut(s)	491, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.