MD15G1233100.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
19070645 .. 19073957
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1233100.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGGCTGTTTCTAATGAGAACCGTTCTAGTCTGATCAGACCCACAAATATGCGAGGAGGACTATGTGCCGGAAAGCGTGGACAGCAGCAGATTAGGCATACCAGGAGGGCTTTTGGAGTCAGTAATCAGAGTTTGTTAGGAGCTCCAGCATACCCTTGTGTTGTTAACAAGAGACCCTTTTCGCAAACACATGAAGTTTATGAGAAGAAACAGGCAGATCCAGCGCACAGACCAATCACAAGGAAGTCTGCTGCACAAATTAGCACTCAGCAATCTTGTTTCAAGGAAGTTAAGATCTTCAAGGTGCCAAACACAACAGCTACAGCCACCAACTCAACTGGTTTTGGAGATTGCACTAGTATATTCGTAAATGACGAATTCAAGTCCCCTGAAGAGCAAGCAGAAGCAATGCCGGAGGATGCAGAGCCCATGTTTTTAGAACAAGCAGAACCAGTGCCGGAGGAAGCAAACGATGCGGAGGAGGTTGAAATGGTGGACATTGTGGAAGAGCCGATTGTGGACATTGATGGCAGCGATTTGAAGAATCCGCTTGCAGTTGTAGACTATGTTGAGGATCTCTATGCTTACTACAGGAGAATGGAGGGTTTTAGCTGTGTCCCACCTGACTATATGGAGCAACATTGTGACATCAATGAGAAGATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCAGGACAATTTTGAGCTGTTGAAGGAGACATTGTTTCTTACTGTGAATCTCATCGATAGATTTTTATCCCAGCGTACGGTTGTAAGAAAGAAACTTCAGTTGGTTGGTCTGGTTGCCATGCTTTTAGCATGCAAGTATGAGGAAGTTTCTGCTCCTATCGTCGGGGATTTGATTCTCATATCGGATAAGGCTTACACAAGGCAGGAAGTCCTGGAAATGGAGAACTTGATGCTCAACACATTGCAGTTTAACATGTCAGTAGCAACGCCGTATGTTTTCATGAGTAGATTCCTCAAGGCTGCTCAATCCGACAAGAAGATTGAACTGCTATCGTTCTTCTTGATCGAGCTCTCTCTTGTGGAGTACCAAATGCTGAAGTTTCCACCATCTTTGTTAGCTGCTGCTGCAGTCTACACTGCTCAGTGCACTCTTTTCGGGTTCAAGCAGTGGAGCAGAACCTGCGAGTGGCACGCAAACTACTCAGAAGAACAGCTCTTAGAGTGCTCAAGTTTGATGGTGGGATTCCACCAGAAGGCGTCGACGGGGAGACTGACAGGGGTGCACAGGAAGTACAGTACTTCCAAGTTTGGCCACATTGCAACTTCAGAACCAGCAAAGTTTCTGCTGCAGACTAAACAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

50.53

Weight (kDa)

5.41

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 192 - 318 2.8e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 321 - 436 2.5e-37 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1163
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 3 cut(s) 561, 1107, 1235
AciI CCGC 2 cut(s) 476, 548
AclWI GGATC 2 cut(s) 212, 582
AcoI YGGCCR 1 cut(s) 1285
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 4 cut(s) 411, 776, 1091, 1284
AcyI GRCGYC 1 cut(s) 1232
AfaI GTAC 4 cut(s) 772, 1061, 1268, 1273
AfiI CCNNNNNNNGG 5 cut(s) 772, 857, 913, 1161, 1228
AflIII ACRYGT 1 cut(s) 948
AgsI TTSAA 8 cut(s) 283, 301, 382, 488, 541, 718, 1019, 1138
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 2 cut(s) 101, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AluBI AGCT 7 cut(s) 143, 320, 612, 712, 1045, 1094, 1189
AluI AGCT 7 cut(s) 143, 320, 612, 712, 1045, 1094, 1189
Alw21I GWGCWC 5 cut(s) 145, 1047, 1124, 1202, 1260
Alw26I GTCTC 3 cut(s) 166, 716, 1237
Alw44I GTGCAC 2 cut(s) 1120, 1256
AlwI GGATC 2 cut(s) 212, 582
AlwNI CAGNNNCTG 1 cut(s) 1155
AoxI GGCC 1 cut(s) 1285
ApaLI GTGCAC 2 cut(s) 1120, 1256
ApeKI GCWGC 8 cut(s) 85, 251, 531, 995, 1094, 1097, 1100, 1321
ApoI RAATTY 1 cut(s) 377
AspLEI GCGC 1 cut(s) 226
BaeGI GKGCMC 2 cut(s) 1124, 1260
BalI TGGCCA 1 cut(s) 1287
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 3 cut(s) 145, 429, 1047
Bbv12I GWGCWC 5 cut(s) 145, 1047, 1124, 1202, 1260
BbvI GCAGC 8 cut(s) 97, 238, 543, 982, 1081, 1084, 1087, 1308
BccI CCATC 3 cut(s) 521, 1090, 1204
BceAI ACGGC 1 cut(s) 949
BcgI CGANNNNNNTGC 2 cut(s) 1111, 1145
BciT130I CCWGG 2 cut(s) 103, 908
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 3 cut(s) 166, 716, 1237
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 2 cut(s) 27, 357
BfmI CTRYAG 5 cut(s) 321, 589, 1101, 1322, 1337
BfuAI ACCTGC 1 cut(s) 1163
BglII AGATCT 1 cut(s) 294
BisI GCNGC 8 cut(s) 86, 252, 532, 996, 1095, 1098, 1101, 1322
BlsI GCNGC 8 cut(s) 87, 253, 533, 997, 1096, 1099, 1102, 1323
BmcAI AGTACT 1 cut(s) 1273
Bme1390I CCNGG 2 cut(s) 103, 908
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 2 cut(s) 103, 908
BmsI GCATC 3 cut(s) 409, 463, 915
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 974, 1186
Bsa29I ATCGAT 1 cut(s) 750
BsaBI GATNNNNATC 1 cut(s) 760
BsaHI GRCGYC 1 cut(s) 1232
BsaI GGTCTC 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 713, 743
Bsc4I CCNNNNNNNGG 5 cut(s) 772, 857, 913, 1161, 1228
Bse1I ACTGG 3 cut(s) 343, 452, 686
Bse3DI GCAATG 3 cut(s) 414, 935, 1290
Bse8I GATNNNNATC 1 cut(s) 760
BseBI CCWGG 2 cut(s) 103, 908
BseCI ATCGAT 1 cut(s) 750
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 760
BseLI CCNNNNNNNGG 5 cut(s) 772, 857, 913, 1161, 1228
BseMI GCAATG 3 cut(s) 414, 935, 1290
BseMII CTCAG 3 cut(s) 281, 1130, 1191
BseNI ACTGG 3 cut(s) 343, 452, 686
BseRI GAGGAG 2 cut(s) 69, 494
BseSI GKGCMC 2 cut(s) 1124, 1260
BseXI GCAGC 8 cut(s) 97, 238, 543, 982, 1081, 1084, 1087, 1308
BseYI CCCAGC 1 cut(s) 765
BsgI GTGCAG 2 cut(s) 237, 716
BshFI GGCC 1 cut(s) 1287
BshNI GGYRCC 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 750
BsiHKAI GWGCWC 5 cut(s) 145, 1047, 1124, 1202, 1260
BsiSI CCGG 3 cut(s) 69, 413, 458
BsiWI CGTACG 1 cut(s) 770
BslFI GGGAC 2 cut(s) 370, 602
BslI CCNNNNNNNGG 5 cut(s) 772, 857, 913, 1161, 1228
BsmAI GTCTC 3 cut(s) 166, 716, 1237
BsmFI GGGAC 2 cut(s) 370, 602
BsnI GGCC 1 cut(s) 1287
Bso31I GGTCTC 1 cut(s) 166
Bsp1286I GDGCHC 6 cut(s) 145, 429, 1047, 1124, 1202, 1260
Bsp143I GATC 5 cut(s) 33, 217, 294, 574, 1038
BspACI CCGC 2 cut(s) 476, 548
BspANI GGCC 1 cut(s) 1287
BspCNI CTCAG 3 cut(s) 280, 1129, 1190
BspDI ATCGAT 1 cut(s) 750
BspHI TCATGA 1 cut(s) 975
BspLI GGNNCC 1 cut(s) 306
BspMAI CTGCAG 2 cut(s) 1105, 1326
BspMI ACCTGC 1 cut(s) 1163
BspPI GGATC 2 cut(s) 212, 582
BspQI GCTCTTC 2 cut(s) 387, 501
BspT107I GGYRCC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 166
BsrDI GCAATG 3 cut(s) 414, 935, 1290
BsrI ACTGG 3 cut(s) 343, 452, 686
BssMI GATC 5 cut(s) 33, 217, 294, 574, 1038
BssNI GRCGYC 1 cut(s) 1232
Bst2UI CCWGG 2 cut(s) 103, 908
Bst4CI ACNGT 4 cut(s) 23, 739, 775, 1271
Bst6I CTCTTC 2 cut(s) 387, 501
BstACI GRCGYC 1 cut(s) 1232
BstAPI GCANNNNNTGC 2 cut(s) 473, 1155
BstC8I GCNNGC 4 cut(s) 399, 552, 826, 1167
BstDEI CTNAG 4 cut(s) 267, 1116, 1177, 1192
BstF5I GGATG 1 cut(s) 424
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 5 cut(s) 36, 220, 297, 577, 1041
BstMAI GTCTC 3 cut(s) 166, 716, 1237
BstMBI GATC 5 cut(s) 33, 217, 294, 574, 1038
BstMWI GCNNNNNNNGC 6 cut(s) 82, 94, 221, 473, 1100, 1155
BstNI CCWGG 2 cut(s) 103, 908
BstNSI RCATGY 2 cut(s) 828, 952
BstSCI CCNGG 2 cut(s) 101, 906
BstSFI CTRYAG 5 cut(s) 321, 589, 1101, 1322, 1337
BstSLI GKGCMC 2 cut(s) 1124, 1260
BstV1I GCAGC 8 cut(s) 97, 238, 543, 982, 1081, 1084, 1087, 1308
BstX2I RGATCY 3 cut(s) 217, 294, 574
BstYI RGATCY 3 cut(s) 217, 294, 574
Bsu15I ATCGAT 1 cut(s) 750
BsuRI GGCC 1 cut(s) 1287
BsuTUI ATCGAT 1 cut(s) 750
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 2 cut(s) 1110, 1148
BtsIMutI CAGTG 4 cut(s) 459, 1110, 1124, 1148
BveI ACCTGC 1 cut(s) 1163
Cac8I GCNNGC 4 cut(s) 399, 552, 826, 1167
CaiI CAGNNNCTG 1 cut(s) 1155
CciI TCATGA 1 cut(s) 975
CfoI GCGC 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 750
CseI GACGC 1 cut(s) 1221
Csp6I GTAC 4 cut(s) 771, 1060, 1267, 1272
CspCI CAANNNNNGTGG 2 cut(s) 1068, 1103
CviAII CATG 6 cut(s) 191, 430, 814, 825, 949, 976
CviQI GTAC 4 cut(s) 771, 1060, 1267, 1272
DdeI CTNAG 4 cut(s) 267, 1116, 1177, 1192
DpnI GATC 5 cut(s) 35, 219, 296, 576, 1040
DpnII GATC 5 cut(s) 33, 217, 294, 574, 1038
EaeI YGGCCR 1 cut(s) 1285
Eam1104I CTCTTC 2 cut(s) 387, 501
EarI CTCTTC 2 cut(s) 387, 501
Ecl136II GAGCTC 2 cut(s) 143, 1045
Eco24I GRGCYC 3 cut(s) 145, 429, 1047
Eco31I GGTCTC 1 cut(s) 166
Eco53kI GAGCTC 2 cut(s) 143, 1045
Eco57I CTGAAG 4 cut(s) 411, 776, 1091, 1284
EcoICRI GAGCTC 2 cut(s) 143, 1045
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 101, 906
EcoT38I GRGCYC 3 cut(s) 145, 429, 1047
FaeI CATG 6 cut(s) 194, 433, 817, 828, 952, 979
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 2 cut(s) 370, 602
FatI CATG 6 cut(s) 190, 429, 813, 824, 948, 975
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 3 cut(s) 561, 1107, 1235
Fnu4HI GCNGC 8 cut(s) 86, 252, 532, 996, 1095, 1098, 1101, 1322
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 3 cut(s) 145, 429, 1047
Fsp4HI GCNGC 8 cut(s) 86, 252, 532, 996, 1095, 1098, 1101, 1322
FspBI CTAG 2 cut(s) 27, 357
GlaI GCGC 1 cut(s) 225
GluI GCNGC 8 cut(s) 86, 252, 532, 996, 1095, 1098, 1101, 1322
GsaI CCCAGC 1 cut(s) 769
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 1287
HapII CCGG 3 cut(s) 69, 413, 458
HgaI GACGC 1 cut(s) 1221
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 1232
Hin1II CATG 6 cut(s) 194, 433, 817, 828, 952, 979
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 2 cut(s) 166, 1236
HindII GTYRAC 2 cut(s) 166, 1236
HinfI GANTC 6 cut(s) 117, 544, 742, 868, 984, 1218
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 3 cut(s) 69, 413, 458
Hpy166II GTNNAC 9 cut(s) 80, 166, 496, 520, 562, 1108, 1122, 1236, 1258
Hpy188I TCNGA 7 cut(s) 33, 38, 129, 880, 1006, 1180, 1303
Hpy188III TCNNGA 2 cut(s) 976, 1036
Hpy8I GTNNAC 9 cut(s) 80, 166, 496, 520, 562, 1108, 1122, 1236, 1258
Hpy99I CGWCG 3 cut(s) 860, 1237, 1240
HpyAV CCTTC 2 cut(s) 712, 1222
HpyCH4III ACNGT 4 cut(s) 23, 739, 775, 1271
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 94, 221, 473, 1100, 1155
HpyF3I CTNAG 4 cut(s) 267, 1116, 1177, 1192
Hsp92I GRCGYC 1 cut(s) 1232
Hsp92II CATG 6 cut(s) 194, 433, 817, 828, 952, 979
HspAI GCGC 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 33
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 5 cut(s) 33, 217, 294, 574, 1038
LguI GCTCTTC 2 cut(s) 387, 501
LmnI GCTCC 5 cut(s) 140, 148, 634, 853, 1146
Lsp1109I GCAGC 8 cut(s) 97, 238, 543, 982, 1081, 1084, 1087, 1308
LweI GCATC 3 cut(s) 409, 463, 915
MaeI CTAG 2 cut(s) 27, 357
MaeIII GTNAC 1 cut(s) 644
MalI GATC 5 cut(s) 35, 219, 296, 576, 1040
MboI GATC 5 cut(s) 33, 217, 294, 574, 1038
MboII GAAGA 9 cut(s) 217, 289, 404, 518, 553, 670, 1024, 1024, 1193
MflI RGATCY 3 cut(s) 217, 294, 574
MhlI GDGCHC 6 cut(s) 145, 429, 1047, 1124, 1202, 1260
MlsI TGGCCA 1 cut(s) 1287
MluCI AATT 4 cut(s) 258, 377, 675, 703
MluNI TGGCCA 1 cut(s) 1287
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 1029
Mox20I TGGCCA 1 cut(s) 1287
MscI TGGCCA 1 cut(s) 1287
MseI TTAA 3 cut(s) 165, 291, 945
MslI CAYNNNNRTG 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 1287
MspI CCGG 3 cut(s) 69, 413, 458
MspR9I CCNGG 2 cut(s) 103, 908
MvaI CCWGG 2 cut(s) 103, 908
MwoI GCNNNNNNNGC 6 cut(s) 82, 94, 221, 473, 1100, 1155
NdeII GATC 5 cut(s) 33, 217, 294, 574, 1038
NlaIII CATG 6 cut(s) 194, 433, 817, 828, 952, 979
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 2 cut(s) 828, 952
PaeI GCATGC 1 cut(s) 828
PagI TCATGA 1 cut(s) 975
PciI ACATGT 1 cut(s) 948
PciSI GCTCTTC 2 cut(s) 387, 501
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 5 cut(s) 544, 742, 868, 984, 1218
Pfl23II CGTACG 1 cut(s) 770
PfoI TCCNGGA 1 cut(s) 906
PkrI GCNGC 8 cut(s) 87, 253, 533, 997, 1096, 1099, 1102, 1323
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PscI ACATGT 1 cut(s) 948
Psp124BI GAGCTC 2 cut(s) 145, 1047
Psp6I CCWGG 2 cut(s) 101, 906
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 2 cut(s) 101, 906
PspLI CGTACG 1 cut(s) 770
PspN4I GGNNCC 1 cut(s) 306
PstI CTGCAG 2 cut(s) 1105, 1326
PstNI CAGNNNCTG 1 cut(s) 1155
PsuI RGATCY 3 cut(s) 217, 294, 574
RsaI GTAC 4 cut(s) 772, 1061, 1268, 1273
RsaNI GTAC 4 cut(s) 771, 1060, 1267, 1272
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 2 cut(s) 145, 1047
SalI GTCGAC 1 cut(s) 1234
SapI GCTCTTC 2 cut(s) 387, 501
SaqAI TTAA 3 cut(s) 165, 291, 945
SatI GCNGC 8 cut(s) 86, 252, 532, 996, 1095, 1098, 1101, 1322
Sau3AI GATC 5 cut(s) 33, 217, 294, 574, 1038
ScaI AGTACT 1 cut(s) 1273
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 2 cut(s) 103, 908
SduI GDGCHC 6 cut(s) 145, 429, 1047, 1124, 1202, 1260
SfaNI GCATC 3 cut(s) 409, 463, 915
SfcI CTRYAG 5 cut(s) 321, 589, 1101, 1322, 1337
SgrDI CGTCGACG 1 cut(s) 1234
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 989, 1201
SmoI CTYRAG 2 cut(s) 989, 1201
SpeI ACTAGT 1 cut(s) 356
SphI GCATGC 1 cut(s) 828
Sse9I AATT 4 cut(s) 258, 377, 675, 703
SsiI CCGC 2 cut(s) 476, 548
SspMI CTAG 2 cut(s) 27, 357
SstI GAGCTC 2 cut(s) 145, 1047
StyD4I CCNGG 2 cut(s) 101, 906
TaaI ACNGT 4 cut(s) 23, 739, 775, 1271
TaqI TCGA 3 cut(s) 750, 1041, 1235
TasI AATT 4 cut(s) 258, 377, 675, 703
TatI WGTACW 2 cut(s) 1266, 1271
TfiI GAWTC 5 cut(s) 544, 742, 868, 984, 1218
Tru1I TTAA 3 cut(s) 165, 291, 945
Tru9I TTAA 3 cut(s) 165, 291, 945
TscAI CASTG 4 cut(s) 459, 1117, 1124, 1148
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 8 cut(s) 85, 251, 531, 995, 1094, 1097, 1100, 1321
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 2 cut(s) 207, 964
TspRI CASTG 4 cut(s) 459, 1117, 1124, 1148
VneI GTGCAC 2 cut(s) 1120, 1256
XapI RAATTY 1 cut(s) 377
XceI RCATGY 2 cut(s) 828, 952
XmiI GTMKAC 3 cut(s) 561, 1107, 1235
XspI CTAG 2 cut(s) 27, 357
ZrmI AGTACT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.