Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007657

Physical Location & Seq

Genomic Coordinates Forward (+)

8899352 .. 8902330

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGTTATTTCTGATGAGAACTGTACTAATCTGGTCAGACCCACAAATGTTCAAGGGGGAGTAGAAATGGGTAACAGGAAGATTGGGCATAACAGGAGGGCATTGGGAGTTATTAATCAGAGTCTAATTGGAGCTAAGCCTTACCCTTGTGTTGTTAACAAGAGAGGCTTTCCTGGAAAGCACGAGATCTGTGAAAAGAAGCAGGCAGATCCGGCGCATAGACCGATTACAAGGAAGTTTGCTGCGCAAATTGGAAGCACTCAGCAATTGAGTCAAGAGGAAATTAAGAAACCCTCAGATAGTTTTGGAGATTGTATATTCATAGATGAGGAATTCAAGTCACCTGAAGACCAGGCTGACCAGCCAGAGCCCATGTTCTTAGAACAAGCAGAAACAATGCCTAATGTGAAGGAGGTTGAAATGGAGGATATTGTGGAGGAGCCACTTGTGGACATTGATAGCAGCGATTTAAAGAACCCACTAGCGGTTGTGGAGTATGTTGAGGATCTTTATACTTATTACAGGAAAATGGAGGGTTTTAGCTGTGTCCCACCTGATTATCTGGAACAACAATTTGACATCAATGAGAAGATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCACGACAAGTTTGAGCTCCTGGACGAGACATTGTTTCTTACTGTTAATCTTATAGATAGATTTTTATCCCAGCAGACAGTGGTAAGAAAGAAACTTCAGTTAGTTGGTCTGGTTGCCATGCTTTTAGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTTGTGGGCGATTTAATCCTTATATCCGATAAGGCTTACACAAGGAAGGAAATCCTGGAAATGGAGAGCTTGATCCTCAACACATTGCAATTTAACATGTCAGTTCCAACACCGTATGTTTTCATGAAAAGGTTCCTCAAGGCTGCTCAATCTGACAAAAAGCTTGAACTTTTATCCTTCTTCTTGATCGAGCTCTCTCTCGTGGAGTACAAGATGCTTAAGTTCTCGCCATCTTTGTTGGCTGCTAGTGCAGTCTACGCTGCTCAGTGTACTCTTTATGGTTTCAAGCAGTGGAGTAGAACCTGTGAGTGGCACACAAACTACTCGGAAGATCAGCTTTTAGAATGTACAAGTTTGATGGTTGGTTTCCACCAAAAGGCAGCAACAGGGAAACTCACAGGGGTACATAGGAAGTTCTGTACATCCAAGTTTGGCTTCATTGCGAATTGTGAACCAGCAAAGTTTCTCTTACAGACCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

422

Amino Acids

48.16

Weight (kDa)

5.27

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	169 - 295	5.5e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	297 - 413	1.1e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17620 AT4G35620 AT4G35620
fragaria_vesca	FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520
malus_domestica	MD02G1119100.v1.1 MD15G1233100.v1.1
prunus_persica	Prupe.7G180800_v2.0.a1 Prupe.7G180800_v2.0.a1
pyrus_communis	pycom02g09280 pycom15g20760
rosa_chinensis	RchiOBHm_Chr2g0097421 RchiOBHm_Chr2g0097521
rosa_multiflora	Rmu_sc0004220.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144700
rosa_rugosa	Rorug02G0066900
rosa_samantha	Rh2AG113300 Rh2BG116400 Rh2CG118400 Rh2DG117400
rosa_wichuraiana	Rw2G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	1038
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	3 cut(s)	203, 513, 850
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	366, 707
AfaI	GTAC	6 cut(s)	25, 992, 1054, 1132, 1188, 1204
AfiI	CCNNNNNNNGG	5 cut(s)	484, 788, 844, 1092, 1159
AflII	CTTAAG	1 cut(s)	1001
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	5 cut(s)	53, 337, 419, 950, 1069
AjnI	CCWGG	4 cut(s)	172, 351, 645, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	1202, 1234
AluBI	AGCT	7 cut(s)	134, 543, 643, 852, 946, 976, 1120
AluI	AGCT	7 cut(s)	134, 543, 643, 852, 946, 976, 1120
Alw21I	GWGCWC	3 cut(s)	630, 645, 978
Alw26I	GTCTC	1 cut(s)	647
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	3 cut(s)	203, 513, 850
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	6 cut(s)	242, 462, 926, 1025, 1043, 1163
ApoI	RAATTY	1 cut(s)	332
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	914
AspLEI	GCGC	2 cut(s)	217, 247
AsuHPI	GGTGA	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	630
BanII	GRGCYC	3 cut(s)	372, 645, 978
BauI	CACGAG	2 cut(s)	182, 983
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	3 cut(s)	630, 645, 978
BbvI	GCAGC	6 cut(s)	229, 474, 913, 1012, 1030, 1175
BccI	CCATC	2 cut(s)	1021, 1135
BciT130I	CCWGG	4 cut(s)	174, 353, 647, 839
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	482, 1029
BfmI	CTRYAG	1 cut(s)	1265
BfrI	CTTAAG	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	6 cut(s)	243, 463, 927, 1026, 1044, 1164
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	6 cut(s)	244, 464, 928, 1027, 1045, 1165
Bme1390I	CCNGG	4 cut(s)	174, 353, 647, 839
BmiI	GGNNCC	2 cut(s)	441, 917
BmrFI	CCNGG	4 cut(s)	174, 353, 647, 839
BmsI	GCATC	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	5 cut(s)	484, 788, 844, 1092, 1159
Bse1I	ACTGG	1 cut(s)	617
Bse3DI	GCAATG	2 cut(s)	866, 1221
Bse8I	GATNNNNATC	1 cut(s)	691
BseBI	CCWGG	4 cut(s)	174, 353, 647, 839
BseGI	GGATG	1 cut(s)	1205
BseJI	GATNNNNATC	1 cut(s)	691
BseLI	CCNNNNNNNGG	5 cut(s)	484, 788, 844, 1092, 1159
BseMI	GCAATG	2 cut(s)	866, 1221
BseMII	CTCAG	3 cut(s)	275, 309, 1061
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	6 cut(s)	229, 474, 913, 1012, 1030, 1175
BseYI	CCCAGC	1 cut(s)	696
BsgI	GTGCAG	1 cut(s)	1053
BsiHKAI	GWGCWC	3 cut(s)	630, 645, 978
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	5 cut(s)	484, 788, 844, 1092, 1159
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	533
Bsp1286I	GDGCHC	4 cut(s)	372, 630, 645, 978
Bsp1407I	TGTACA	2 cut(s)	1130, 1202
Bsp143I	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	485
BspCNI	CTCAG	3 cut(s)	274, 308, 1060
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	2 cut(s)	441, 917
BspPI	GGATC	3 cut(s)	203, 513, 850
BspTI	CTTAAG	1 cut(s)	1001
BsrDI	GCAATG	2 cut(s)	866, 1221
BsrGI	TGTACA	2 cut(s)	1130, 1202
BsrI	ACTGG	1 cut(s)	617
BssMI	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
BssSI	CACGAG	2 cut(s)	182, 983
Bst2BI	CACGAG	2 cut(s)	182, 983
Bst2UI	CCWGG	4 cut(s)	174, 353, 647, 839
Bst4CI	ACNGT	4 cut(s)	23, 670, 706, 897
BstAFI	CTTAAG	1 cut(s)	1001
BstAUI	TGTACA	2 cut(s)	1130, 1202
BstC8I	GCNNGC	2 cut(s)	204, 757
BstDEI	CTNAG	5 cut(s)	135, 261, 295, 379, 1047
BstF5I	GGATG	1 cut(s)	1205
BstHHI	GCGC	2 cut(s)	217, 247
BstKTI	GATC	6 cut(s)	189, 211, 508, 858, 972, 1117
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 1031, 1040
BstNI	CCWGG	4 cut(s)	174, 353, 647, 839
BstNSI	RCATGY	2 cut(s)	759, 883
BstSCI	CCNGG	4 cut(s)	172, 351, 645, 837
BstSFI	CTRYAG	1 cut(s)	1265
BstSLI	GKGCMC	1 cut(s)	630
BstV1I	GCAGC	6 cut(s)	229, 474, 913, 1012, 1030, 1175
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	186, 208, 505
BstYI	RGATCY	3 cut(s)	186, 208, 505
BtsCI	GGATG	1 cut(s)	1205
BtsI	GCAGTG	1 cut(s)	1079
BtsIMutI	CAGTG	3 cut(s)	711, 1055, 1079
Cac8I	GCNNGC	2 cut(s)	204, 757
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	2 cut(s)	217, 247
Csp6I	GTAC	6 cut(s)	24, 991, 1053, 1131, 1187, 1203
CviAII	CATG	5 cut(s)	373, 745, 756, 880, 907
CviQI	GTAC	6 cut(s)	24, 991, 1053, 1131, 1187, 1203
DdeI	CTNAG	5 cut(s)	135, 261, 295, 379, 1047
DpnI	GATC	6 cut(s)	188, 210, 507, 857, 971, 1116
DpnII	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
DraI	TTTAAA	1 cut(s)	471
Ecl136II	GAGCTC	2 cut(s)	643, 976
Eco24I	GRGCYC	3 cut(s)	372, 645, 978
Eco53kI	GAGCTC	2 cut(s)	643, 976
Eco57I	CTGAAG	2 cut(s)	366, 707
EcoICRI	GAGCTC	2 cut(s)	643, 976
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	4 cut(s)	172, 351, 645, 837
EcoT38I	GRGCYC	3 cut(s)	372, 645, 978
FaeI	CATG	5 cut(s)	376, 748, 759, 883, 910
FalI	AAGNNNNNCTT	8 cut(s)	152, 184, 1104, 1136, 1202, 1234, 1235, 1267
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	5 cut(s)	372, 744, 755, 879, 906
FblI	GTMKAC	1 cut(s)	1038
Fnu4HI	GCNGC	6 cut(s)	243, 463, 927, 1026, 1044, 1164
FokI	GGATG	1 cut(s)	1192
FriOI	GRGCYC	3 cut(s)	372, 645, 978
Fsp4HI	GCNGC	6 cut(s)	243, 463, 927, 1026, 1044, 1164
FspBI	CTAG	2 cut(s)	482, 1029
FspI	TGCGCA	1 cut(s)	246
GlaI	GCGC	2 cut(s)	216, 246
GluI	GCNGC	6 cut(s)	243, 463, 927, 1026, 1044, 1164
GsaI	CCCAGC	1 cut(s)	700
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	2 cut(s)	217, 247
Hin1II	CATG	5 cut(s)	376, 748, 759, 883, 910
Hin6I	GCGC	2 cut(s)	215, 245
HinP1I	GCGC	2 cut(s)	215, 245
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	2 cut(s)	121, 271
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	6 cut(s)	157, 451, 628, 1039, 1053, 1235
Hpy188I	TCNGA	7 cut(s)	13, 38, 120, 298, 811, 937, 1111
Hpy188III	TCNNGA	4 cut(s)	275, 563, 907, 967
Hpy8I	GTNNAC	6 cut(s)	157, 451, 628, 1039, 1053, 1235
HpyAV	CCTTC	3 cut(s)	403, 823, 970
HpyCH4III	ACNGT	4 cut(s)	23, 670, 706, 897
HpyCH4V	TGCA	4 cut(s)	628, 759, 871, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 1031, 1040
HpyF3I	CTNAG	5 cut(s)	135, 261, 295, 379, 1047
Hsp92II	CATG	5 cut(s)	376, 748, 759, 883, 910
HspAI	GCGC	2 cut(s)	215, 245
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
LmnI	GCTCC	3 cut(s)	131, 439, 648
Lsp1109I	GCAGC	6 cut(s)	229, 474, 913, 1012, 1030, 1175
LweI	GCATC	1 cut(s)	987
MaeI	CTAG	2 cut(s)	482, 1029
MaeIII	GTNAC	2 cut(s)	71, 339
MalI	GATC	6 cut(s)	188, 210, 507, 857, 971, 1116
MboI	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
MboII	GAAGA	5 cut(s)	91, 359, 601, 955, 1124
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	3 cut(s)	186, 208, 505
MhlI	GDGCHC	4 cut(s)	372, 630, 645, 978
MluCI	AATT	9 cut(s)	126, 249, 266, 282, 332, 572, 606, 872, 1228
MlyI	GAGTC	2 cut(s)	130, 280
MmeI	TCCRAC	1 cut(s)	914
MroXI	GAANNNNTTC	1 cut(s)	914
MseI	TTAA	8 cut(s)	114, 156, 285, 470, 672, 797, 876, 1002
MspCI	CTTAAG	1 cut(s)	1001
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	4 cut(s)	174, 353, 647, 839
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	4 cut(s)	174, 353, 647, 839
MwoI	GCNNNNNNNGC	3 cut(s)	212, 1031, 1040
NdeII	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
NlaIII	CATG	5 cut(s)	376, 748, 759, 883, 910
NlaIV	GGNNCC	2 cut(s)	441, 917
NmuCI	GTSAC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	246
NspI	RCATGY	2 cut(s)	759, 883
PaeI	GCATGC	1 cut(s)	759
PagI	TCATGA	1 cut(s)	906
PciI	ACATGT	1 cut(s)	879
PdmI	GAANNNNTTC	1 cut(s)	914
PfoI	TCCNGGA	3 cut(s)	172, 645, 837
PkrI	GCNGC	6 cut(s)	244, 464, 928, 1027, 1045, 1165
PleI	GAGTC	2 cut(s)	129, 279
PpsI	GAGTC	2 cut(s)	129, 279
PscI	ACATGT	1 cut(s)	879
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	2 cut(s)	645, 978
Psp6I	CCWGG	4 cut(s)	172, 351, 645, 837
PspFI	CCCAGC	1 cut(s)	696
PspGI	CCWGG	4 cut(s)	172, 351, 645, 837
PspN4I	GGNNCC	2 cut(s)	441, 917
PsuI	RGATCY	3 cut(s)	186, 208, 505
RsaI	GTAC	6 cut(s)	25, 992, 1054, 1132, 1188, 1204
RsaNI	GTAC	6 cut(s)	24, 991, 1053, 1131, 1187, 1203
SacI	GAGCTC	2 cut(s)	645, 978
SaqAI	TTAA	8 cut(s)	114, 156, 285, 470, 672, 797, 876, 1002
SatI	GCNGC	6 cut(s)	243, 463, 927, 1026, 1044, 1164
Sau3AI	GATC	6 cut(s)	186, 208, 505, 855, 969, 1114
SchI	GAGTC	2 cut(s)	130, 280
ScrFI	CCNGG	4 cut(s)	174, 353, 647, 839
SduI	GDGCHC	4 cut(s)	372, 630, 645, 978
SfaNI	GCATC	1 cut(s)	987
SfcI	CTRYAG	1 cut(s)	1265
SmlI	CTYRAG	2 cut(s)	920, 1001
SmoI	CTYRAG	2 cut(s)	920, 1001
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	9 cut(s)	126, 249, 266, 282, 332, 572, 606, 872, 1228
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	2 cut(s)	482, 1029
SstI	GAGCTC	2 cut(s)	645, 978
StyD4I	CCNGG	4 cut(s)	172, 351, 645, 837
TaaI	ACNGT	4 cut(s)	23, 670, 706, 897
TaqI	TCGA	1 cut(s)	972
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	9 cut(s)	126, 249, 266, 282, 332, 572, 606, 872, 1228
TatI	WGTACW	5 cut(s)	23, 990, 1052, 1130, 1202
Tru1I	TTAA	8 cut(s)	114, 156, 285, 470, 672, 797, 876, 1002
Tru9I	TTAA	8 cut(s)	114, 156, 285, 470, 672, 797, 876, 1002
TscAI	CASTG	3 cut(s)	711, 1055, 1079
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	6 cut(s)	242, 462, 926, 1025, 1043, 1163
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	4 cut(s)	310, 895, 923, 1210
TspRI	CASTG	3 cut(s)	711, 1055, 1079
Vha464I	CTTAAG	1 cut(s)	1001
VneI	GTGCAC	1 cut(s)	626
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	759, 883
XmiI	GTMKAC	1 cut(s)	1038
XmnI	GAANNNNTTC	1 cut(s)	914
XspI	CTAG	2 cut(s)	482, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.