RchiOBHm_Chr2g0097521

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007657
Physical Location & Seq
Forward (+)
10131036 .. 10133098
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47239

Sequence Viewer

Length: 720 bp
ATGGTTATTTCTGATGAGAACTGTACTAATCTGGTCAGACCCACAAATGTTCAAGGGGGAGTAGAAATGGGTAACAGGAAGATTGGGCATAACAGGAGGGCATTGGGAGTTATTAATCAGAGTCTAATTGGAGCTAAGCCTTACCCTTGTGTTGTTAACAAGAGAGGCTTTCCTGGAAAGCACGAGATCTGTGAAAAGAAGCAGGCAGATCCGGCGCATAGACCGATTACAAGGAAGTTTGCTGCACAAATTGGAAGCACTCAGCAATTGAGTCAAGAGGAAATTAAGAAACCCTCAGATAGTTTTGGAGATTGTATATTCATAGATGAGGAATTCAAGTCACCTGAAGACCAGGCTGACCAGCCAGAGCCCATGTTCTTAGAACAAGCAGAAACAATGCCTAATGAAGCCAATGTGAAGGAGGTTGAAATGGAGGATATTGTGGAGGAGCCACTTGTGGACATTGATAGCAGCGATTTAAAGAACCCACTAGCGGTTGTGGAGTATGTTGAGGATCTTTATACTTATTACAGGAAAATGGAGGGTTTTAGCTGTGTCCCACCTGATTATCTGGAACAACAATTTGACATCAATGAGAAGATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCACGACAAGTTCGAGCTCCTGGACGAGACATTGTTTCTTACTGTTAATCTTATAGATAGATTTTTATCCAGCAAACAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

239

Amino Acids

27.41

Weight (kDa)

4.63

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 172 - 238 3.1e-20 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 494
AclWI GGATC 2 cut(s) 203, 522
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 493
AgsI TTSAA 3 cut(s) 53, 337, 428
AjnI CCWGG 3 cut(s) 172, 351, 654
AluBI AGCT 3 cut(s) 134, 552, 652
AluI AGCT 3 cut(s) 134, 552, 652
Alw21I GWGCWC 2 cut(s) 639, 654
Alw26I GTCTC 1 cut(s) 656
Alw44I GTGCAC 1 cut(s) 635
AlwI GGATC 2 cut(s) 203, 522
ApaLI GTGCAC 1 cut(s) 635
ApeKI GCWGC 2 cut(s) 242, 471
ApoI RAATTY 1 cut(s) 332
AseI ATTAAT 1 cut(s) 114
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 639
BanII GRGCYC 2 cut(s) 372, 654
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 2 cut(s) 639, 654
BbvI GCAGC 2 cut(s) 229, 483
BciT130I CCWGG 3 cut(s) 174, 353, 656
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 1 cut(s) 491
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 243, 472
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 2 cut(s) 244, 473
Bme1390I CCNGG 3 cut(s) 174, 353, 656
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 3 cut(s) 174, 353, 656
BpiI GAAGAC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 700
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse1I ACTGG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 700
BseBI CCWGG 3 cut(s) 174, 353, 656
BseJI GATNNNNATC 1 cut(s) 700
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 2 cut(s) 275, 309
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 461
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 2 cut(s) 229, 483
BsgI GTGCAG 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 639, 654
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 542
Bsp1286I GDGCHC 3 cut(s) 372, 639, 654
Bsp143I GATC 3 cut(s) 186, 208, 514
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 1 cut(s) 494
BspCNI CTCAG 2 cut(s) 274, 308
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 2 cut(s) 203, 522
BsrI ACTGG 1 cut(s) 626
BssMI GATC 3 cut(s) 186, 208, 514
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 174, 353, 656
Bst4CI ACNGT 3 cut(s) 23, 679, 714
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 4 cut(s) 135, 261, 295, 379
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 189, 211, 517
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 3 cut(s) 186, 208, 514
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 3 cut(s) 174, 353, 656
BstSCI CCNGG 3 cut(s) 172, 351, 654
BstSLI GKGCMC 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 229, 483
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 3 cut(s) 186, 208, 514
BstYI RGATCY 3 cut(s) 186, 208, 514
BtsIMutI CAGTG 1 cut(s) 719
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 373
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 4 cut(s) 135, 261, 295, 379
DpnI GATC 3 cut(s) 188, 210, 516
DpnII GATC 3 cut(s) 186, 208, 514
DraI TTTAAA 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 652
Eco24I GRGCYC 2 cut(s) 372, 654
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 3 cut(s) 172, 351, 654
EcoT38I GRGCYC 2 cut(s) 372, 654
FaeI CATG 1 cut(s) 376
FaiI YATR 9 cut(s) 90, 219, 317, 323, 374, 507, 522, 611, 689
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 542
FatI CATG 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 243, 472
FriOI GRGCYC 2 cut(s) 372, 654
Fsp4HI GCNGC 2 cut(s) 243, 472
FspBI CTAG 1 cut(s) 491
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 243, 472
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 2 cut(s) 121, 271
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 3 cut(s) 157, 460, 637
Hpy188I TCNGA 4 cut(s) 13, 38, 120, 298
Hpy188III TCNNGA 2 cut(s) 275, 572
Hpy8I GTNNAC 3 cut(s) 157, 460, 637
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 3 cut(s) 23, 679, 714
HpyCH4V TGCA 2 cut(s) 245, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 4 cut(s) 135, 261, 295, 379
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 1 cut(s) 215
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 3 cut(s) 186, 208, 514
LmnI GCTCC 3 cut(s) 131, 448, 657
Lsp1109I GCAGC 2 cut(s) 229, 483
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 71, 339
MalI GATC 3 cut(s) 188, 210, 516
MboI GATC 3 cut(s) 186, 208, 514
MboII GAAGA 3 cut(s) 91, 359, 610
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 3 cut(s) 186, 208, 514
MhlI GDGCHC 3 cut(s) 372, 639, 654
MluCI AATT 7 cut(s) 126, 249, 266, 282, 332, 581, 615
MlyI GAGTC 2 cut(s) 130, 280
MseI TTAA 5 cut(s) 114, 156, 285, 479, 681
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 3 cut(s) 174, 353, 656
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 3 cut(s) 174, 353, 656
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 3 cut(s) 186, 208, 514
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PfoI TCCNGGA 2 cut(s) 172, 654
PkrI GCNGC 2 cut(s) 244, 473
PleI GAGTC 2 cut(s) 129, 279
PpsI GAGTC 2 cut(s) 129, 279
PshBI ATTAAT 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 3 cut(s) 172, 351, 654
PspGI CCWGG 3 cut(s) 172, 351, 654
PspN4I GGNNCC 1 cut(s) 450
PsuI RGATCY 3 cut(s) 186, 208, 514
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 5 cut(s) 114, 156, 285, 479, 681
SatI GCNGC 2 cut(s) 243, 472
Sau3AI GATC 3 cut(s) 186, 208, 514
SchI GAGTC 2 cut(s) 130, 280
ScrFI CCNGG 3 cut(s) 174, 353, 656
SduI GDGCHC 3 cut(s) 372, 639, 654
SetI ASST 7 cut(s) 136, 346, 426, 554, 565, 636, 654
Sse9I AATT 7 cut(s) 126, 249, 266, 282, 332, 581, 615
SsiI CCGC 1 cut(s) 494
SspMI CTAG 1 cut(s) 491
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 3 cut(s) 172, 351, 654
TaaI ACNGT 3 cut(s) 23, 679, 714
TaqI TCGA 1 cut(s) 648
TaqII GACCGA 1 cut(s) 238
TasI AATT 7 cut(s) 126, 249, 266, 282, 332, 581, 615
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 5 cut(s) 114, 156, 285, 479, 681
Tru9I TTAA 5 cut(s) 114, 156, 285, 479, 681
TscAI CASTG 1 cut(s) 719
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 2 cut(s) 242, 471
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 2 cut(s) 310, 420
TspRI CASTG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 635
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 332
XspI CTAG 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.