Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007657

Physical Location & Seq

Genomic Coordinates Forward (+)

9722022 .. 9725553

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG117400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTCTTAGAACAAGCAGAAACAATGCCTAATGAAGCCAATGTGAAGGAGGTTGAAATGGAGGATATTGTGGAGGAGCCACTTGTGGACATTGATAGCAGCGATTTAAAGAACCCACTAGCGGTTGTGGAGTATGTTGAGGATCTTTATACTTATTACAGGAAAATGGAGGGTTTTAGCTGTGTCCCACCTGATTATCTGGAACAACAATTTGACATCAATGAGAAGATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCACGACAAGTTCGAGCTCCTGGACGAGACATTGTTTCTTACTGTTAATCTTATAGATAGATTTTTATCCCAGCAAACAGTGGTAAGAAAGAAACTTCAGTTAGTTGGTCTGGTTGCCATGCTTTTAGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTTGTTGGCGATTTAATCCTTATATCCGATAAGGCTTACACAAGGAAGGAAATCCTGGAAATGGAGAGCTTGATCCTCAACACATTGCAATTTAACATGTCAGTTCCAACACCGTATGTTTTCATGAAAAGGTTCCTCAAGGCTGCTCAATCTGACAAAAAGCTTGAACTTTTATCCTTCTTCTTGATCGAGCTCTCTCTCGTGGAGTACGAGATGCTTAAGTTCTCGCCATCTTTGTTGGCTGCTAGTGCAGTCTACGCTGCTCAGTGTACTCTTTATGGTTTCAAGCAGTGGAGTAGAACCTGTGAGTGGCACACAAACTACTCGGAAGATCAGCTTTTAGAATGTACAAGTTTGATGGTTGGTTTCCACCAAAAGGCAGCAGCAGGGAAACTCACAGGGGTACATAGGAAGTTCTGTACATCCAAGTTTGGCTTCATTGCGAATTGTGAACCAGCAAAGTTTCTCTTACAGACCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

301

Amino Acids

34.71

Weight (kDa)

4.8

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	48 - 174	2.7e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	176 - 292	1.2e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17620 AT4G35620 AT4G35620
fragaria_vesca	FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520
malus_domestica	MD02G1119100.v1.1 MD15G1233100.v1.1
prunus_persica	Prupe.7G180800_v2.0.a1 Prupe.7G180800_v2.0.a1
pyrus_communis	pycom02g09280 pycom15g20760
rosa_chinensis	RchiOBHm_Chr2g0097421 RchiOBHm_Chr2g0097521
rosa_multiflora	Rmu_sc0004220.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144700
rosa_rugosa	Rorug02G0066900
rosa_samantha	Rh2AG113300 Rh2BG116400 Rh2CG118400 Rh2DG117400
rosa_wichuraiana	Rw2G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	675
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	150, 487
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	5 cut(s)	629, 691, 769, 825, 841
AfiI	CCNNNNNNNGG	5 cut(s)	121, 425, 481, 729, 796
AflII	CTTAAG	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	56, 587, 706
AjnI	CCWGG	2 cut(s)	282, 474
AjuI	GAANNNNNNNTTGG	2 cut(s)	839, 871
AluBI	AGCT	6 cut(s)	180, 280, 489, 583, 613, 757
AluI	AGCT	6 cut(s)	180, 280, 489, 583, 613, 757
Alw21I	GWGCWC	3 cut(s)	267, 282, 615
Alw26I	GTCTC	1 cut(s)	284
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	150, 487
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	6 cut(s)	99, 563, 662, 680, 800, 803
Asp700I	GAANNNNTTC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	2 cut(s)	282, 615
BauI	CACGAG	1 cut(s)	620
Bbv12I	GWGCWC	3 cut(s)	267, 282, 615
BbvI	GCAGC	6 cut(s)	111, 550, 649, 667, 812, 815
BccI	CCATC	2 cut(s)	658, 772
BciT130I	CCWGG	2 cut(s)	284, 476
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	119, 666
BfmI	CTRYAG	1 cut(s)	902
BfrI	CTTAAG	1 cut(s)	638
BisI	GCNGC	6 cut(s)	100, 564, 663, 681, 801, 804
BlsI	GCNGC	6 cut(s)	101, 565, 664, 682, 802, 805
Bme1390I	CCNGG	2 cut(s)	284, 476
BmiI	GGNNCC	2 cut(s)	78, 554
BmrFI	CCNGG	2 cut(s)	284, 476
BmsI	GCATC	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 425, 481, 729, 796
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	2 cut(s)	503, 858
Bse8I	GATNNNNATC	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	284, 476
BseGI	GGATG	1 cut(s)	842
BseJI	GATNNNNATC	1 cut(s)	328
BseLI	CCNNNNNNNGG	5 cut(s)	121, 425, 481, 729, 796
BseMI	GCAATG	2 cut(s)	503, 858
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	6 cut(s)	111, 550, 649, 667, 812, 815
BseYI	CCCAGC	1 cut(s)	333
BsgI	GTGCAG	1 cut(s)	690
BsiHKAI	GWGCWC	3 cut(s)	267, 282, 615
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	5 cut(s)	121, 425, 481, 729, 796
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	170
Bsp1286I	GDGCHC	3 cut(s)	267, 282, 615
Bsp1407I	TGTACA	2 cut(s)	767, 839
Bsp143I	GATC	4 cut(s)	142, 492, 606, 751
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	697
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	78, 554
BspPI	GGATC	2 cut(s)	150, 487
BspTI	CTTAAG	1 cut(s)	638
BsrDI	GCAATG	2 cut(s)	503, 858
BsrGI	TGTACA	2 cut(s)	767, 839
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	4 cut(s)	142, 492, 606, 751
BssSI	CACGAG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	620
Bst2UI	CCWGG	2 cut(s)	284, 476
Bst4CI	ACNGT	3 cut(s)	307, 343, 534
BstAFI	CTTAAG	1 cut(s)	638
BstAUI	TGTACA	2 cut(s)	767, 839
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	7, 684
BstF5I	GGATG	1 cut(s)	842
BstKTI	GATC	4 cut(s)	145, 495, 609, 754
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	4 cut(s)	142, 492, 606, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 677
BstNI	CCWGG	2 cut(s)	284, 476
BstNSI	RCATGY	2 cut(s)	396, 520
BstSCI	CCNGG	2 cut(s)	282, 474
BstSFI	CTRYAG	1 cut(s)	902
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	6 cut(s)	111, 550, 649, 667, 812, 815
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	842
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	3 cut(s)	348, 692, 716
Cac8I	GCNNGC	1 cut(s)	394
CciI	TCATGA	1 cut(s)	543
Csp6I	GTAC	5 cut(s)	628, 690, 768, 824, 840
CviAII	CATG	4 cut(s)	382, 393, 517, 544
CviQI	GTAC	5 cut(s)	628, 690, 768, 824, 840
DdeI	CTNAG	2 cut(s)	7, 684
DpnI	GATC	4 cut(s)	144, 494, 608, 753
DpnII	GATC	4 cut(s)	142, 492, 606, 751
DraI	TTTAAA	1 cut(s)	108
Ecl136II	GAGCTC	2 cut(s)	280, 613
Eco24I	GRGCYC	2 cut(s)	282, 615
Eco53kI	GAGCTC	2 cut(s)	280, 613
Eco57I	CTGAAG	1 cut(s)	344
EcoICRI	GAGCTC	2 cut(s)	280, 613
EcoRII	CCWGG	2 cut(s)	282, 474
EcoT38I	GRGCYC	2 cut(s)	282, 615
FaeI	CATG	4 cut(s)	385, 396, 520, 547
FalI	AAGNNNNNCTT	6 cut(s)	741, 773, 839, 871, 872, 904
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	381, 392, 516, 543
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	6 cut(s)	100, 564, 663, 681, 801, 804
FokI	GGATG	1 cut(s)	829
FriOI	GRGCYC	2 cut(s)	282, 615
Fsp4HI	GCNGC	6 cut(s)	100, 564, 663, 681, 801, 804
FspBI	CTAG	2 cut(s)	119, 666
GluI	GCNGC	6 cut(s)	100, 564, 663, 681, 801, 804
GsaI	CCCAGC	1 cut(s)	337
Hin1II	CATG	4 cut(s)	385, 396, 520, 547
HindIII	AAGCTT	1 cut(s)	581
Hpy166II	GTNNAC	5 cut(s)	88, 265, 676, 690, 872
Hpy188I	TCNGA	3 cut(s)	448, 574, 748
Hpy188III	TCNNGA	3 cut(s)	200, 544, 604
Hpy8I	GTNNAC	5 cut(s)	88, 265, 676, 690, 872
HpyAV	CCTTC	3 cut(s)	40, 460, 607
HpyCH4III	ACNGT	3 cut(s)	307, 343, 534
HpyCH4V	TGCA	4 cut(s)	265, 396, 508, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 677
HpyF3I	CTNAG	2 cut(s)	7, 684
Hsp92II	CATG	4 cut(s)	385, 396, 520, 547
Kzo9I	GATC	4 cut(s)	142, 492, 606, 751
LmnI	GCTCC	2 cut(s)	76, 285
Lsp1109I	GCAGC	6 cut(s)	111, 550, 649, 667, 812, 815
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	2 cut(s)	119, 666
MalI	GATC	4 cut(s)	144, 494, 608, 753
MboI	GATC	4 cut(s)	142, 492, 606, 751
MboII	GAAGA	3 cut(s)	238, 592, 761
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	3 cut(s)	267, 282, 615
MluCI	AATT	4 cut(s)	209, 243, 509, 865
MmeI	TCCRAC	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	5 cut(s)	107, 309, 434, 513, 639
MspCI	CTTAAG	1 cut(s)	638
MspR9I	CCNGG	2 cut(s)	284, 476
MvaI	CCWGG	2 cut(s)	284, 476
MwoI	GCNNNNNNNGC	2 cut(s)	668, 677
NdeII	GATC	4 cut(s)	142, 492, 606, 751
NlaIII	CATG	4 cut(s)	385, 396, 520, 547
NlaIV	GGNNCC	2 cut(s)	78, 554
NspI	RCATGY	2 cut(s)	396, 520
PaeI	GCATGC	1 cut(s)	396
PagI	TCATGA	1 cut(s)	543
PciI	ACATGT	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 627
PdmI	GAANNNNTTC	1 cut(s)	551
PfoI	TCCNGGA	2 cut(s)	282, 474
PkrI	GCNGC	6 cut(s)	101, 565, 664, 682, 802, 805
PscI	ACATGT	1 cut(s)	516
Psp124BI	GAGCTC	2 cut(s)	282, 615
Psp6I	CCWGG	2 cut(s)	282, 474
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	2 cut(s)	282, 474
PspN4I	GGNNCC	2 cut(s)	78, 554
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	5 cut(s)	629, 691, 769, 825, 841
RsaNI	GTAC	5 cut(s)	628, 690, 768, 824, 840
SacI	GAGCTC	2 cut(s)	282, 615
SaqAI	TTAA	5 cut(s)	107, 309, 434, 513, 639
SatI	GCNGC	6 cut(s)	100, 564, 663, 681, 801, 804
Sau3AI	GATC	4 cut(s)	142, 492, 606, 751
ScrFI	CCNGG	2 cut(s)	284, 476
SduI	GDGCHC	3 cut(s)	267, 282, 615
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	902
SmlI	CTYRAG	2 cut(s)	557, 638
SmoI	CTYRAG	2 cut(s)	557, 638
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	4 cut(s)	209, 243, 509, 865
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	119, 666
SstI	GAGCTC	2 cut(s)	282, 615
StyD4I	CCNGG	2 cut(s)	282, 474
TaaI	ACNGT	3 cut(s)	307, 343, 534
TaqI	TCGA	2 cut(s)	276, 609
TasI	AATT	4 cut(s)	209, 243, 509, 865
TatI	WGTACW	3 cut(s)	689, 767, 839
Tru1I	TTAA	5 cut(s)	107, 309, 434, 513, 639
Tru9I	TTAA	5 cut(s)	107, 309, 434, 513, 639
TscAI	CASTG	3 cut(s)	348, 692, 716
TseI	GCWGC	6 cut(s)	99, 563, 662, 680, 800, 803
TspDTI	ATGAA	4 cut(s)	48, 532, 560, 847
TspRI	CASTG	3 cut(s)	348, 692, 716
Vha464I	CTTAAG	1 cut(s)	638
VneI	GTGCAC	1 cut(s)	263
XceI	RCATGY	2 cut(s)	396, 520
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	2 cut(s)	119, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.