Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007657

Physical Location & Seq

Genomic Coordinates Forward (+)

16901596 .. 16904001

Gene Structure 2406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGTTAATCCAGAGGAGAACAATCGTAATCTCGTTGTCAAACCCATTACAGAGATTCTTCAAGATGATGATAAGAGAAGCAGAAAATTCGGTGTAGAGATGAAGAGACAGAACAGGAGAGCATTGGGTGTGATTAATCACAATCTCGTTGGTGCAAAAGCTTATCCTTGTGTTGTTAACAAGAGAAGAGGCTTATCTCAGAGAAAACAAGAAAGCTGTGACAAGAAGAAGCTTGATTCATTGCATCCGTCAATTTCAAGATCTCAGGAAGAGACTAAGAAGCTGAAACCAAGTGGAAACGAGTTTGGTGATTGCATATTCATTGATGAAGAAGAGGAGAAGAATGAAGAAGTTACATTGGACCAACCTATGCCAATGTCATTGGAGGAACCATACATTGAATTTGATCCAATGGAGGAAGAAGTTGAGATGGAGGATATGGAAGAAGAACAAGAAGAACCAGTTTTGGATATAGACGAATACGATGCAAACAACTCTCTTGCAGCTGTTGAATACGTCCAAGATCTTTACGATTTCTACCGTAAAACCGAGAGATTTAGCTGTGTTCCTCTAGATTACATGGCGCAACAGTTTGATATATCTGACAAAATGAGAGCAATACTTATTGACTGGCTCATCGAGGTACATGATAAGTTTGAGCTGATGAACGAGACATTGTTTCTAACAGTCAATCTGATAGATAGATTCTTGTCCAAGCAAGCTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCTTGCAAGTACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAAGCTTATACGAGGACCGATGTTTTAGAAATGGAGAAGATTATGCTTAGTACTTTGCAATTCAATATGTCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCAGACAAGAAGCTTGAGATCTTGGCGTCGTTCTTGATTGAGCTTGCTCTTGTGGACTACGAAATGGTTCGGTATCCACCATCGTTACTCGCCGCCACTGCCGTGTACACAGCTCAATGTACAATCCATGGCTTCAGTGAATGGAACAGCACTTGTGAATTCCATTGTCACTACTCTGAGAATCAACTCCTAGAATGTTGTAGAAGAATGGTGAGACTACATCAGAAAGCTGGGACTGATAAACTAACAGGAGTACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACAAAGTATGAAGCTGCACACTTTCTTGTGTCAGATTCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

429

Amino Acids

49.79

Weight (kDa)

5.08

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	175 - 301	3.1e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	303 - 417	4.9e-38	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17620 AT4G35620 AT4G35620
fragaria_vesca	FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520
malus_domestica	MD02G1119100.v1.1 MD15G1233100.v1.1
prunus_persica	Prupe.7G180800_v2.0.a1 Prupe.7G180800_v2.0.a1
pyrus_communis	pycom02g09280 pycom15g20760
rosa_chinensis	RchiOBHm_Chr2g0097421 RchiOBHm_Chr2g0097521
rosa_multiflora	Rmu_sc0004220.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144700
rosa_rugosa	Rorug02G0066900
rosa_samantha	Rh2AG113300 Rh2BG116400 Rh2CG118400 Rh2DG117400
rosa_wichuraiana	Rw2G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1044
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	4 cut(s)	86, 401, 1109, 1229
AcuI	CTGAAG	2 cut(s)	725, 1069
AcyI	GRCGYC	1 cut(s)	977
AfaI	GTAC	7 cut(s)	645, 782, 798, 883, 1058, 1072, 1206
AgsI	TTSAA	7 cut(s)	62, 258, 401, 512, 809, 895, 928
AleI	CACNNNNGTG	1 cut(s)	1052
Alw26I	GTCTC	4 cut(s)	100, 266, 665, 1159
AlwI	GGATC	1 cut(s)	401
ApeKI	GCWGC	3 cut(s)	503, 944, 1259
ApoI	RAATTY	4 cut(s)	86, 401, 1109, 1229
AseI	ATTAAT	1 cut(s)	135
Asp700I	GAANNNNTTC	2 cut(s)	932, 1017
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	2 cut(s)	361, 846
AsuHPI	GGTGA	2 cut(s)	320, 1174
AvaII	GGWCC	2 cut(s)	361, 846
BbvI	GCAGC	3 cut(s)	515, 956, 1246
BccI	CCATC	2 cut(s)	424, 1039
BceAI	ACGGC	1 cut(s)	1037
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 467, 501
BciVI	GTATCC	2 cut(s)	1035, 1229
BcoDI	GTCTC	4 cut(s)	100, 266, 665, 1159
BfaI	CTAG	2 cut(s)	572, 1142
BfuI	GTATCC	2 cut(s)	1035, 1229
BglII	AGATCT	3 cut(s)	260, 523, 969
BisI	GCNGC	4 cut(s)	504, 945, 1044, 1260
BlsI	GCNGC	4 cut(s)	505, 946, 1045, 1261
BmcAI	AGTACT	1 cut(s)	883
Bme18I	GGWCC	2 cut(s)	361, 846
BmgT120I	GGNCC	2 cut(s)	361, 846
BmiI	GGNNCC	2 cut(s)	390, 935
BmsI	GCATC	2 cut(s)	253, 475
BpuEI	CTTGAG	2 cut(s)	923, 986
BsaHI	GRCGYC	1 cut(s)	977
BsaJI	CCNNGG	1 cut(s)	1078
BsaXI	ACNNNNNCTCC	2 cut(s)	1208, 1238
Bse1I	ACTGG	2 cut(s)	461, 635
Bse3DI	GCAATG	2 cut(s)	239, 761
BseDI	CCNNGG	1 cut(s)	1078
BseGI	GGATG	1 cut(s)	244
BseMI	GCAATG	2 cut(s)	239, 761
BseMII	CTCAG	3 cut(s)	212, 278, 1119
BseNI	ACTGG	2 cut(s)	461, 635
BseRI	GAGGAG	3 cut(s)	29, 350, 1213
BseXI	GCAGC	3 cut(s)	515, 956, 1246
BseYI	CCCAGC	1 cut(s)	1181
BsgI	GTGCAG	1 cut(s)	1245
BslFI	GGGAC	1 cut(s)	1198
BsmAI	GTCTC	4 cut(s)	100, 266, 665, 1159
BsmFI	GGGAC	1 cut(s)	1198
Bsp1407I	TGTACA	2 cut(s)	1056, 1070
Bsp143I	GATC	4 cut(s)	260, 406, 523, 969
Bsp19I	CCATGG	1 cut(s)	1078
BspACI	CCGC	1 cut(s)	1044
BspCNI	CTCAG	3 cut(s)	211, 277, 1120
BspLI	GGNNCC	2 cut(s)	390, 935
BspPI	GGATC	1 cut(s)	401
BsrDI	GCAATG	2 cut(s)	239, 761
BsrGI	TGTACA	2 cut(s)	1056, 1070
BsrI	ACTGG	2 cut(s)	461, 635
BssECI	CCNNGG	1 cut(s)	1078
BssMI	GATC	4 cut(s)	260, 406, 523, 969
BssNI	GRCGYC	1 cut(s)	977
BssT1I	CCWWGG	1 cut(s)	1078
Bst4CI	ACNGT	3 cut(s)	542, 591, 688
Bst6I	CTCTTC	6 cut(s)	98, 181, 264, 327, 780, 923
BstACI	GRCGYC	1 cut(s)	977
BstAUI	TGTACA	2 cut(s)	1056, 1070
BstC8I	GCNNGC	3 cut(s)	720, 775, 996
BstDEI	CTNAG	6 cut(s)	198, 264, 276, 769, 878, 1128
BstDSI	CCRYGG	1 cut(s)	1078
BstF5I	GGATG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	4 cut(s)	263, 409, 526, 972
BstMAI	GTCTC	4 cut(s)	100, 266, 665, 1159
BstMBI	GATC	4 cut(s)	260, 406, 523, 969
BstMWI	GCNNNNNNNGC	1 cut(s)	1049
BstV1I	GCAGC	3 cut(s)	515, 956, 1246
BstX2I	RGATCY	3 cut(s)	260, 523, 969
BstYI	RGATCY	3 cut(s)	260, 523, 969
BsuI	GTATCC	2 cut(s)	1035, 1229
BtgI	CCRYGG	1 cut(s)	1078
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	2 cut(s)	1047, 1093
Cac8I	GCNNGC	3 cut(s)	720, 775, 996
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	361, 846
CseI	GACGC	1 cut(s)	966
Csp6I	GTAC	7 cut(s)	644, 781, 797, 882, 1057, 1071, 1205
CviAII	CATG	3 cut(s)	580, 647, 1079
CviQI	GTAC	7 cut(s)	644, 781, 797, 882, 1057, 1071, 1205
DdeI	CTNAG	6 cut(s)	198, 264, 276, 769, 878, 1128
DpnI	GATC	4 cut(s)	262, 408, 525, 971
DpnII	GATC	4 cut(s)	260, 406, 523, 969
Eam1104I	CTCTTC	6 cut(s)	98, 181, 264, 327, 780, 923
EarI	CTCTTC	6 cut(s)	98, 181, 264, 327, 780, 923
Eco130I	CCWWGG	1 cut(s)	1078
Eco47I	GGWCC	2 cut(s)	361, 846
Eco57I	CTGAAG	2 cut(s)	725, 1069
EcoRI	GAATTC	1 cut(s)	1109
EcoT14I	CCWWGG	1 cut(s)	1078
ErhI	CCWWGG	1 cut(s)	1078
FaeI	CATG	3 cut(s)	583, 650, 1082
FaqI	GGGAC	1 cut(s)	1198
FatI	CATG	3 cut(s)	579, 646, 1078
Fnu4HI	GCNGC	4 cut(s)	504, 945, 1044, 1260
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	504, 945, 1044, 1260
FspBI	CTAG	2 cut(s)	572, 1142
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	4 cut(s)	504, 945, 1044, 1260
GsaI	CCCAGC	1 cut(s)	1185
HgaI	GACGC	1 cut(s)	966
HhaI	GCGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	977
Hin1II	CATG	3 cut(s)	583, 650, 1082
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	5 cut(s)	159, 230, 737, 834, 962
HinfI	GANTC	5 cut(s)	55, 236, 705, 1132, 1280
HpaI	GTTAAC	1 cut(s)	178
HphI	GGTGA	2 cut(s)	320, 1174
Hpy166II	GTNNAC	4 cut(s)	178, 1006, 1057, 1059
Hpy188I	TCNGA	9 cut(s)	201, 604, 696, 829, 955, 1129, 1176, 1235, 1279
Hpy188III	TCNNGA	7 cut(s)	11, 62, 258, 266, 572, 925, 985
Hpy8I	GTNNAC	4 cut(s)	178, 1006, 1057, 1059
Hpy99I	CGWCG	1 cut(s)	982
HpyCH4III	ACNGT	3 cut(s)	542, 591, 688
HpyCH4IV	ACGT	1 cut(s)	516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1049
HpyF3I	CTNAG	6 cut(s)	198, 264, 276, 769, 878, 1128
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	977
Hsp92II	CATG	3 cut(s)	583, 650, 1082
HspAI	GCGC	1 cut(s)	584
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	260, 406, 523, 969
LmnI	GCTCC	1 cut(s)	1226
LpnPI	CCDG	7 cut(s)	24, 100, 251, 474, 616, 1167, 1185
Lsp1109I	GCAGC	3 cut(s)	515, 956, 1246
LweI	GCATC	2 cut(s)	253, 475
MaeI	CTAG	2 cut(s)	572, 1142
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	5 cut(s)	218, 352, 903, 1035, 1118
MalI	GATC	4 cut(s)	262, 408, 525, 971
MboI	GATC	4 cut(s)	260, 406, 523, 969
MflI	RGATCY	3 cut(s)	260, 523, 969
MluCI	AATT	6 cut(s)	86, 252, 401, 890, 1109, 1229
MroXI	GAANNNNTTC	2 cut(s)	932, 1017
MseI	TTAA	3 cut(s)	6, 135, 177
MslI	CAYNNNNRTG	1 cut(s)	1052
MspA1I	CMGCKG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	1049
NcoI	CCATGG	1 cut(s)	1078
NdeII	GATC	4 cut(s)	260, 406, 523, 969
NlaIII	CATG	3 cut(s)	583, 650, 1082
NlaIV	GGNNCC	2 cut(s)	390, 935
NmuCI	GTSAC	2 cut(s)	218, 1118
OliI	CACNNNNGTG	1 cut(s)	1052
PdmI	GAANNNNTTC	2 cut(s)	932, 1017
PfeI	GAWTC	5 cut(s)	55, 236, 705, 1132, 1280
PkrI	GCNGC	4 cut(s)	505, 946, 1045, 1261
PshBI	ATTAAT	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	1181
PspN4I	GGNNCC	2 cut(s)	390, 935
PspPI	GGNCC	2 cut(s)	361, 846
PsuI	RGATCY	3 cut(s)	260, 523, 969
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	7 cut(s)	645, 782, 798, 883, 1058, 1072, 1206
RsaNI	GTAC	7 cut(s)	644, 781, 797, 882, 1057, 1071, 1205
RseI	CAYNNNNRTG	1 cut(s)	1052
SaqAI	TTAA	3 cut(s)	6, 135, 177
SatI	GCNGC	4 cut(s)	504, 945, 1044, 1260
Sau3AI	GATC	4 cut(s)	260, 406, 523, 969
Sau96I	GGNCC	2 cut(s)	361, 846
ScaI	AGTACT	1 cut(s)	883
SfaNI	GCATC	2 cut(s)	253, 475
SinI	GGWCC	2 cut(s)	361, 846
SmiMI	CAYNNNNRTG	1 cut(s)	1052
SmlI	CTYRAG	2 cut(s)	938, 965
SmoI	CTYRAG	2 cut(s)	938, 965
Sse9I	AATT	6 cut(s)	86, 252, 401, 890, 1109, 1229
SsiI	CCGC	1 cut(s)	1044
SspMI	CTAG	2 cut(s)	572, 1142
StyI	CCWWGG	1 cut(s)	1078
TaaI	ACNGT	3 cut(s)	542, 591, 688
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	639
TaqII	GACCGA	1 cut(s)	863
TasI	AATT	6 cut(s)	86, 252, 401, 890, 1109, 1229
TatI	WGTACW	4 cut(s)	881, 1056, 1070, 1204
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	5 cut(s)	55, 236, 705, 1132, 1280
Tru1I	TTAA	3 cut(s)	6, 135, 177
Tru9I	TTAA	3 cut(s)	6, 135, 177
TscAI	CASTG	2 cut(s)	1054, 1093
TseFI	GTSAC	2 cut(s)	218, 1118
TseI	GCWGC	3 cut(s)	503, 944, 1259
Tsp45I	GTSAC	2 cut(s)	218, 1118
TspDTI	ATGAA	7 cut(s)	116, 228, 310, 342, 360, 680, 1269
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	1054, 1093
VpaK11BI	GGWCC	2 cut(s)	361, 846
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	4 cut(s)	86, 401, 1109, 1229
XbaI	TCTAGA	1 cut(s)	571
XmnI	GAANNNNTTC	2 cut(s)	932, 1017
XspI	CTAG	2 cut(s)	572, 1142
ZrmI	AGTACT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.