Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007657

Physical Location & Seq

Genomic Coordinates Forward (+)

5758152 .. 5761326

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGTTTTTCTGATGAGAACTCTGCCAATCTGGTCAGACCCACAAGTGTTCAAGGGGGAGTGGAGATGGGTAACAGGAAGATTGGGCATAATAGGAGGGCATTGGGTGTTATTAATCAGAGTCTGATTGGAGCTAAGCCTTACCCTTGTGTTGTTAACAAGAGAGGCTTTCCTGGAAAGCATGAGATCTGTGAAAAGAAGCAGGCAGATCCGGCGCATAGACCGATTACAAGGAAGTTCGCTGCACAAATTGAAAGCACTCAGCAATTGAGACAAGAGGAAATTAAGAAGCCCTCAGATAGTTTTGGAGATTGTATATTCATAGATGAGGAATTCAAGTCACCTGAAGACCAGGCTGACCAACCAGAGCCAATGTTCTTAGAACAAGCAATGCCTAATGAAGCCCATGATATGAAGGAAGTTGAAATGGAAGATATTGTGGAGGAGCCACTTGTGGACATTGATAGATGCGATTTAAAGAATTCACTAGCGGTCGTGGAGTATGTTGAGGATCTTCATACTTATTACAAGAAAATGGAGGGTTTTAGCTGTGTCCCACCTGATTATCTGGAACAACAATTTGACATCAATGAGAAGATGAGGTCTATACTAATTGACTGGCTTATTGAGGTGCACGACAAATTTGAACTCCTGGACGAGACATTGTTTCTTACTGTCAATCTAATAGATAGATTTTTATCCCAGCAAACAGTAGTACGAAAGAAACTTCAATTAGTTGGTCTGGTTGCTATGCTTTTAGCGTGCAAGTATGAGGAAGTTTCTGTGCCTGTTGTCGGCGATTTGATTCTTATATCCGATAAGGCTTACACAAGGAAGGAAATACTGGAAATGGAGAGCTTGATCCTCAACACATTACAATTTAACATGTCAGTTCCAACACCATATGTTTTCCTGAAAAGGTTCCTCAAGGCTGCTCAATCTGACAAAAAGCTTGAACTTCTATCCTTCTTCTTGATCGAGCTCTCTCTTGTGGAGTATGAGATGCTTAAGTTCTCGCCATCTATGTTGGCTGCTAGTGCAGTCTACGCTGCTCAGTGTACTCTTTATGGTTTCAAGCAATGGAGTAGAACCTGTGAGTGGCACACAAACTACTCAGAAGATCAGCTTTTAGAATGTTCAAGTTTGATGGTTGGTTTCCACCAAAAGGCGGCAGCAGGGAAACTCACTGGAGTACATAGGAAATTCTGTACATCCAAGTTTGGCTTCATCGCGAACTGTGAACCAGCAAAGTTTCTCTTACAGACCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

425

Amino Acids

48.47

Weight (kDa)

5.27

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	172 - 297	3.3e-47	Cyclin, N-terminal domain
Cyclin_C	PF02984	299 - 415	1.9e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17620 AT4G35620 AT4G35620
fragaria_vesca	FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520
malus_domestica	MD02G1119100.v1.1 MD15G1233100.v1.1
prunus_persica	Prupe.7G180800_v2.0.a1 Prupe.7G180800_v2.0.a1
pyrus_communis	pycom02g09280 pycom15g20760
rosa_chinensis	RchiOBHm_Chr2g0097421 RchiOBHm_Chr2g0097521
rosa_multiflora	Rmu_sc0004220.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144700
rosa_rugosa	Rorug02G0066900
rosa_samantha	Rh2AG113300 Rh2BG116400 Rh2CG118400 Rh2DG117400
rosa_wichuraiana	Rw2G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1044
AccII	CGCG	1 cut(s)	1232
AciI	CCGC	2 cut(s)	491, 1169
AclWI	GGATC	3 cut(s)	203, 519, 856
AcsI	RAATTY	4 cut(s)	332, 481, 641, 1202
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	4 cut(s)	717, 1060, 1194, 1210
AfiI	CCNNNNNNNGG	4 cut(s)	794, 1098, 1165, 1168
AflII	CTTAAG	1 cut(s)	1007
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	9 cut(s)	53, 254, 337, 425, 647, 731, 956, 1075, 1140
AjnI	CCWGG	3 cut(s)	172, 351, 651
AjuI	GAANNNNNNNTTGG	2 cut(s)	1208, 1240
AluBI	AGCT	6 cut(s)	134, 549, 858, 952, 982, 1126
AluI	AGCT	6 cut(s)	134, 549, 858, 952, 982, 1126
Alw21I	GWGCWC	2 cut(s)	636, 984
Alw26I	GTCTC	2 cut(s)	265, 653
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	3 cut(s)	203, 519, 856
AlwNI	CAGNNNCTG	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	5 cut(s)	242, 932, 1031, 1049, 1172
ApoI	RAATTY	4 cut(s)	332, 481, 641, 1202
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	920
AspLEI	GCGC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	984
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	636, 984
BbvI	GCAGC	5 cut(s)	229, 919, 1018, 1036, 1184
BccI	CCATC	3 cut(s)	61, 1027, 1141
BciT130I	CCWGG	3 cut(s)	174, 353, 653
BcoDI	GTCTC	2 cut(s)	265, 653
BfaI	CTAG	2 cut(s)	488, 1035
BfmI	CTRYAG	1 cut(s)	1271
BfrI	CTTAAG	1 cut(s)	1007
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	6 cut(s)	243, 933, 1032, 1050, 1170, 1173
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	6 cut(s)	244, 934, 1033, 1051, 1171, 1174
Bme1390I	CCNGG	3 cut(s)	174, 353, 653
BmiI	GGNNCC	2 cut(s)	447, 923
BmrFI	CCNGG	3 cut(s)	174, 353, 653
BmsI	GCATC	2 cut(s)	458, 993
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	1209
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	911
BsaBI	GATNNNNATC	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	4 cut(s)	794, 1098, 1165, 1168
Bse1I	ACTGG	3 cut(s)	623, 849, 1192
Bse3DI	GCAATG	2 cut(s)	396, 1085
Bse8I	GATNNNNATC	1 cut(s)	697
BseBI	CCWGG	3 cut(s)	174, 353, 653
BseGI	GGATG	1 cut(s)	1211
BseJI	GATNNNNATC	1 cut(s)	697
BseLI	CCNNNNNNNGG	4 cut(s)	794, 1098, 1165, 1168
BseMI	GCAATG	2 cut(s)	396, 1085
BseMII	CTCAG	4 cut(s)	275, 309, 1067, 1128
BseNI	ACTGG	3 cut(s)	623, 849, 1192
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	636
BseXI	GCAGC	5 cut(s)	229, 919, 1018, 1036, 1184
BseYI	CCCAGC	1 cut(s)	702
BsgI	GTGCAG	2 cut(s)	228, 1059
Bsh1236I	CGCG	1 cut(s)	1232
Bsh1285I	CGRYCG	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	2 cut(s)	636, 984
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	4 cut(s)	794, 1098, 1165, 1168
BsmAI	GTCTC	2 cut(s)	265, 653
BsmFI	GGGAC	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	636, 984
Bsp1407I	TGTACA	1 cut(s)	1208
Bsp143I	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp68I	TCGCGA	1 cut(s)	1232
BspACI	CCGC	2 cut(s)	491, 1169
BspCNI	CTCAG	4 cut(s)	274, 308, 1066, 1127
BspFNI	CGCG	1 cut(s)	1232
BspLI	GGNNCC	2 cut(s)	447, 923
BspPI	GGATC	3 cut(s)	203, 519, 856
BspTI	CTTAAG	1 cut(s)	1007
BsrDI	GCAATG	2 cut(s)	396, 1085
BsrGI	TGTACA	1 cut(s)	1208
BsrI	ACTGG	3 cut(s)	623, 849, 1192
BssMI	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
Bst2UI	CCWGG	3 cut(s)	174, 353, 653
Bst4CI	ACNGT	3 cut(s)	676, 712, 1238
BstAFI	CTTAAG	1 cut(s)	1007
BstAUI	TGTACA	1 cut(s)	1208
BstC8I	GCNNGC	2 cut(s)	204, 763
BstDEI	CTNAG	6 cut(s)	135, 261, 295, 379, 1053, 1114
BstF5I	GGATG	1 cut(s)	1211
BstFNI	CGCG	1 cut(s)	1232
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	6 cut(s)	189, 211, 514, 864, 978, 1123
BstMAI	GTCTC	2 cut(s)	265, 653
BstMBI	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 1037, 1046
BstNI	CCWGG	3 cut(s)	174, 353, 653
BstNSI	RCATGY	1 cut(s)	889
BstSCI	CCNGG	3 cut(s)	172, 351, 651
BstSFI	CTRYAG	1 cut(s)	1271
BstSLI	GKGCMC	1 cut(s)	636
BstUI	CGCG	1 cut(s)	1232
BstV1I	GCAGC	5 cut(s)	229, 919, 1018, 1036, 1184
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	186, 208, 511
BstYI	RGATCY	3 cut(s)	186, 208, 511
BtgZI	GCGATG	1 cut(s)	1213
BtsCI	GGATG	1 cut(s)	1211
BtsIMutI	CAGTG	2 cut(s)	1061, 1185
BtuMI	TCGCGA	1 cut(s)	1232
Cac8I	GCNNGC	2 cut(s)	204, 763
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	217
Csp6I	GTAC	4 cut(s)	716, 1059, 1193, 1209
CviAII	CATG	3 cut(s)	182, 407, 886
CviQI	GTAC	4 cut(s)	716, 1059, 1193, 1209
DdeI	CTNAG	6 cut(s)	135, 261, 295, 379, 1053, 1114
DpnI	GATC	6 cut(s)	188, 210, 513, 863, 977, 1122
DpnII	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
DraI	TTTAAA	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	982
Eco24I	GRGCYC	1 cut(s)	984
Eco53kI	GAGCTC	1 cut(s)	982
Eco57I	CTGAAG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	982
EcoRI	GAATTC	2 cut(s)	332, 481
EcoRII	CCWGG	3 cut(s)	172, 351, 651
EcoT38I	GRGCYC	1 cut(s)	984
FaeI	CATG	3 cut(s)	185, 410, 889
FalI	AAGNNNNNCTT	8 cut(s)	152, 184, 1110, 1142, 1208, 1240, 1241, 1273
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	3 cut(s)	181, 406, 885
FauNDI	CATATG	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	1044
Fnu4HI	GCNGC	6 cut(s)	243, 933, 1032, 1050, 1170, 1173
FokI	GGATG	1 cut(s)	1198
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	6 cut(s)	243, 933, 1032, 1050, 1170, 1173
FspBI	CTAG	2 cut(s)	488, 1035
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	6 cut(s)	243, 933, 1032, 1050, 1170, 1173
GsaI	CCCAGC	1 cut(s)	706
GsuI	CTGGAG	1 cut(s)	1209
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	185, 410, 889
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	2 cut(s)	121, 805
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	6 cut(s)	157, 457, 634, 1045, 1059, 1241
Hpy188I	TCNGA	8 cut(s)	13, 38, 120, 126, 298, 817, 943, 1117
Hpy188III	TCNNGA	4 cut(s)	569, 913, 973, 1231
Hpy8I	GTNNAC	6 cut(s)	157, 457, 634, 1045, 1059, 1241
HpyAV	CCTTC	3 cut(s)	409, 829, 976
HpyCH4III	ACNGT	3 cut(s)	676, 712, 1238
HpyCH4V	TGCA	4 cut(s)	245, 634, 765, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 1037, 1046
HpyF3I	CTNAG	6 cut(s)	135, 261, 295, 379, 1053, 1114
Hsp92II	CATG	3 cut(s)	185, 410, 889
HspAI	GCGC	1 cut(s)	215
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
LmnI	GCTCC	2 cut(s)	131, 445
Lsp1109I	GCAGC	5 cut(s)	229, 919, 1018, 1036, 1184
LweI	GCATC	2 cut(s)	458, 993
MaeI	CTAG	2 cut(s)	488, 1035
MaeIII	GTNAC	2 cut(s)	71, 339
MalI	GATC	6 cut(s)	188, 210, 513, 863, 977, 1122
MboI	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
MboII	GAAGA	7 cut(s)	91, 359, 443, 506, 607, 961, 1130
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	3 cut(s)	186, 208, 511
MhlI	GDGCHC	2 cut(s)	636, 984
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	920
MroXI	GAANNNNTTC	1 cut(s)	920
MseI	TTAA	6 cut(s)	114, 156, 285, 476, 882, 1008
MspCI	CTTAAG	1 cut(s)	1007
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	174, 353, 653
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	3 cut(s)	174, 353, 653
MvnI	CGCG	1 cut(s)	1232
MwoI	GCNNNNNNNGC	3 cut(s)	212, 1037, 1046
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
NlaIII	CATG	3 cut(s)	185, 410, 889
NlaIV	GGNNCC	2 cut(s)	447, 923
NmuCI	GTSAC	1 cut(s)	339
NruI	TCGCGA	1 cut(s)	1232
NspI	RCATGY	1 cut(s)	889
PciI	ACATGT	1 cut(s)	885
PdmI	GAANNNNTTC	1 cut(s)	920
PfeI	GAWTC	1 cut(s)	805
PfoI	TCCNGGA	2 cut(s)	172, 651
PkrI	GCNGC	6 cut(s)	244, 934, 1033, 1051, 1171, 1174
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PscI	ACATGT	1 cut(s)	885
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	984
Psp6I	CCWGG	3 cut(s)	172, 351, 651
PspFI	CCCAGC	1 cut(s)	702
PspGI	CCWGG	3 cut(s)	172, 351, 651
PspN4I	GGNNCC	2 cut(s)	447, 923
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	3 cut(s)	186, 208, 511
RruI	TCGCGA	1 cut(s)	1232
RsaI	GTAC	4 cut(s)	717, 1060, 1194, 1210
RsaNI	GTAC	4 cut(s)	716, 1059, 1193, 1209
SacI	GAGCTC	1 cut(s)	984
SaqAI	TTAA	6 cut(s)	114, 156, 285, 476, 882, 1008
SatI	GCNGC	6 cut(s)	243, 933, 1032, 1050, 1170, 1173
Sau3AI	GATC	6 cut(s)	186, 208, 511, 861, 975, 1120
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	3 cut(s)	174, 353, 653
SduI	GDGCHC	2 cut(s)	636, 984
SfaNI	GCATC	2 cut(s)	458, 993
SfcI	CTRYAG	1 cut(s)	1271
SmlI	CTYRAG	2 cut(s)	926, 1007
SmoI	CTYRAG	2 cut(s)	926, 1007
SsiI	CCGC	2 cut(s)	491, 1169
SspMI	CTAG	2 cut(s)	488, 1035
SstI	GAGCTC	1 cut(s)	984
StyD4I	CCNGG	3 cut(s)	172, 351, 651
TaaI	ACNGT	3 cut(s)	676, 712, 1238
TaqI	TCGA	1 cut(s)	978
TaqII	GACCGA	1 cut(s)	238
TatI	WGTACW	3 cut(s)	1058, 1192, 1208
TauI	GCSGC	1 cut(s)	1172
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	6 cut(s)	114, 156, 285, 476, 882, 1008
Tru9I	TTAA	6 cut(s)	114, 156, 285, 476, 882, 1008
TscAI	CASTG	2 cut(s)	1061, 1192
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	5 cut(s)	242, 932, 1031, 1049, 1172
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	5 cut(s)	310, 414, 428, 506, 1216
TspRI	CASTG	2 cut(s)	1061, 1192
Vha464I	CTTAAG	1 cut(s)	1007
VneI	GTGCAC	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	4 cut(s)	332, 481, 641, 1202
XceI	RCATGY	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	1044
XmnI	GAANNNNTTC	1 cut(s)	920
XspI	CTAG	2 cut(s)	488, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.