Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007657

Physical Location & Seq

Genomic Coordinates Reverse (-)

82615997 .. 82618972

Gene Structure 2976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGTTATTTCTGATGAGAACTGTGCTAATCTGGTCAGACCCACAAATGTTCAAGGTGAATTGTGGTGCCCCAGATTTGGATTTCGATTTGAAACCGTAAACATTGTGGCTTTTTTTGATTTTTTGGGTTTGTTTTGGATGAAATGTAGGGGAGTAGAAATGGGTAACAGGAAGATTGGGCATAACAGAAGGGCATTGGGAGTTATTAATCAGAGTCTAATTGGAGCTAAGCCATACCCTTGTGTTGTTAACAAGAGAGGCTTTCCTGGAAAGCATGAGATCTGTGAAAAGAAGCAGGCAGATCCGGCGCATAGACCGATTACAAGGAAGTTTGCTGCACAAATTGGAAGCACTCAGCAATTGAGTCAAGAGGAAATTAAGAAACCCTCAGATAGTTTTGGAGATTGTATATTCATAGATGAGGAATTCAAGTCACCTGAAGACCAGGCTGACGAGCCAGAGCCCATGTTCTTAGAACAAGCAGAAACAGTGCCTAATGAAGCCAATGTGAAGGAGGTTGAAATGGAGGATATTGTGGAGGAGCCACTTGTGGACATTGATAGCAGCGATTTAAAGAACTCACTAGCGGTTGTGGAGTATGTTGAGGATCTTTATACTTATTACAGGAAAATGGAGGGTTTTAGCTGTGTCCCACCTGATTATCTGGAACAACAATTTGACATCAATGAGAAGATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCACGACAAGTTCGAACTCCTGGACGAGACATTGTTTCTTACTGTTAATCTTATAGATAGATTTTTATCCCAGCAAACAGTGGTAAGAAAGAAACTTCAGTTAGTTGGTCTGGTTGCCATGCTTTTAGCATGCAAGTATGAGGAAGTTTCTGTGCCTGTTGTGGGCGATTTAATCCTTATATCCGATAAGGCTTACACAAGGAAGGAAATCCTGGAAATGGAGAGCTTGATCCTCAACACATTGCAATTTAACATGTCAGTTCCAACACCGTATGTTTTCATGAAAAGGTTCCTCAAGGCTGCTCAATCTGACAAAAAGCTTGAACTTTTATCCTTCTTCTTGATCGAGCTCTCTCTCGTGGAGTATGAGATGCTTAAGTTCTCGCCATCTTTGTTGGCTGCTAGTGCAGTCTACGCTGCTCAGTGTACTCTTTATGGTTTCAAGCAGTGGAGTAGAACCTGTGAGTGGCACACAAACTACTCGGAAGATCAGCTTTTAGAATGTACAAGTTTGATGGTTGGTTTCCACCAAAAGGCAGCAACAGGGAAACTCACAGGGGTACATAGGAAGTTCTGTACATCCAAGTTTGGCTTCATTGCGAATTGTGAACCAGCAAAGTTTCTCTTACAGACCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

456

Amino Acids

52.27

Weight (kDa)

5.14

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	203 - 329	6.4e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	331 - 447	1.3e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17620 AT4G35620 AT4G35620
fragaria_vesca	FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520 FvH4_1g10520
malus_domestica	MD02G1119100.v1.1 MD15G1233100.v1.1
prunus_persica	Prupe.7G180800_v2.0.a1 Prupe.7G180800_v2.0.a1
pyrus_communis	pycom02g09280 pycom15g20760
rosa_chinensis	RchiOBHm_Chr2g0097421 RchiOBHm_Chr2g0097521
rosa_multiflora	Rmu_sc0004220.1_g000007
rosa_roxburghii	Rroxscaffold_2G00144700
rosa_rugosa	Rorug02G0066900
rosa_samantha	Rh2AG113300 Rh2BG116400 Rh2CG118400 Rh2DG117400
rosa_wichuraiana	Rw2G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	1140
AciI	CCGC	1 cut(s)	587
AclWI	GGATC	3 cut(s)	296, 615, 952
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	2 cut(s)	459, 809
AfaI	GTAC	4 cut(s)	1156, 1234, 1290, 1306
AfiI	CCNNNNNNNGG	5 cut(s)	77, 890, 946, 1194, 1261
AflII	CTTAAG	1 cut(s)	1103
AflIII	ACRYGT	1 cut(s)	981
AgsI	TTSAA	6 cut(s)	53, 92, 430, 521, 1052, 1171
AjnI	CCWGG	4 cut(s)	265, 444, 747, 939
AjuI	GAANNNNNNNTTGG	2 cut(s)	1304, 1336
AluBI	AGCT	6 cut(s)	227, 645, 954, 1048, 1078, 1222
AluI	AGCT	6 cut(s)	227, 645, 954, 1048, 1078, 1222
Alw21I	GWGCWC	2 cut(s)	732, 1080
Alw26I	GTCTC	1 cut(s)	749
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	3 cut(s)	296, 615, 952
ApaLI	GTGCAC	1 cut(s)	728
ApeKI	GCWGC	6 cut(s)	335, 564, 1028, 1127, 1145, 1265
ApoI	RAATTY	1 cut(s)	425
AseI	ATTAAT	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	68, 426
AsuII	TTCGAA	1 cut(s)	741
BaeGI	GKGCMC	2 cut(s)	71, 732
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	2 cut(s)	465, 1080
BauI	CACGAG	1 cut(s)	1085
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	732, 1080
BbvI	GCAGC	6 cut(s)	322, 576, 1015, 1114, 1132, 1277
BccI	CCATC	2 cut(s)	1123, 1237
BciT130I	CCWGG	4 cut(s)	267, 446, 749, 941
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	2 cut(s)	584, 1131
BfmI	CTRYAG	1 cut(s)	1367
BfrI	CTTAAG	1 cut(s)	1103
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	6 cut(s)	336, 565, 1029, 1128, 1146, 1266
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	6 cut(s)	337, 566, 1030, 1129, 1147, 1267
Bme1390I	CCNGG	4 cut(s)	267, 446, 749, 941
BmiI	GGNNCC	3 cut(s)	68, 543, 1019
BmrFI	CCNGG	4 cut(s)	267, 446, 749, 941
BmsI	GCATC	1 cut(s)	1089
BpiI	GAAGAC	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	1007
BsaBI	GATNNNNATC	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 890, 946, 1194, 1261
Bse1I	ACTGG	1 cut(s)	719
Bse3DI	GCAATG	2 cut(s)	968, 1323
Bse8I	GATNNNNATC	1 cut(s)	793
BseBI	CCWGG	4 cut(s)	267, 446, 749, 941
BseGI	GGATG	2 cut(s)	144, 1307
BseJI	GATNNNNATC	1 cut(s)	793
BseLI	CCNNNNNNNGG	5 cut(s)	77, 890, 946, 1194, 1261
BseMI	GCAATG	2 cut(s)	968, 1323
BseMII	CTCAG	3 cut(s)	368, 402, 1163
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	554
BseSI	GKGCMC	2 cut(s)	71, 732
BseXI	GCAGC	6 cut(s)	322, 576, 1015, 1114, 1132, 1277
BseYI	CCCAGC	1 cut(s)	798
BsgI	GTGCAG	2 cut(s)	321, 1155
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	732, 1080
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	5 cut(s)	77, 890, 946, 1194, 1261
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	635
Bsp119I	TTCGAA	1 cut(s)	741
Bsp1286I	GDGCHC	4 cut(s)	71, 465, 732, 1080
Bsp1407I	TGTACA	2 cut(s)	1232, 1304
Bsp143I	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	587
BspCNI	CTCAG	3 cut(s)	367, 401, 1162
BspHI	TCATGA	1 cut(s)	1008
BspLI	GGNNCC	3 cut(s)	68, 543, 1019
BspPI	GGATC	3 cut(s)	296, 615, 952
BspT104I	TTCGAA	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	66
BspTI	CTTAAG	1 cut(s)	1103
BsrDI	GCAATG	2 cut(s)	968, 1323
BsrGI	TGTACA	2 cut(s)	1232, 1304
BsrI	ACTGG	1 cut(s)	719
BssMI	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
BssSI	CACGAG	1 cut(s)	1085
Bst2BI	CACGAG	1 cut(s)	1085
Bst2UI	CCWGG	4 cut(s)	267, 446, 749, 941
Bst4CI	ACNGT	6 cut(s)	23, 97, 490, 772, 808, 999
BstAFI	CTTAAG	1 cut(s)	1103
BstAUI	TGTACA	2 cut(s)	1232, 1304
BstBI	TTCGAA	1 cut(s)	741
BstC8I	GCNNGC	2 cut(s)	297, 859
BstDEI	CTNAG	5 cut(s)	228, 354, 388, 472, 1149
BstF5I	GGATG	2 cut(s)	144, 1307
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	6 cut(s)	282, 304, 610, 960, 1074, 1219
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 1133, 1142
BstNI	CCWGG	4 cut(s)	267, 446, 749, 941
BstNSI	RCATGY	2 cut(s)	861, 985
BstSCI	CCNGG	4 cut(s)	265, 444, 747, 939
BstSFI	CTRYAG	1 cut(s)	1367
BstSLI	GKGCMC	2 cut(s)	71, 732
BstV1I	GCAGC	6 cut(s)	322, 576, 1015, 1114, 1132, 1277
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	3 cut(s)	279, 301, 607
BstYI	RGATCY	3 cut(s)	279, 301, 607
BtsCI	GGATG	2 cut(s)	144, 1307
BtsI	GCAGTG	1 cut(s)	1181
BtsIMutI	CAGTG	4 cut(s)	495, 813, 1157, 1181
Cac8I	GCNNGC	2 cut(s)	297, 859
CciI	TCATGA	1 cut(s)	1008
CfoI	GCGC	1 cut(s)	310
Csp6I	GTAC	4 cut(s)	1155, 1233, 1289, 1305
CviAII	CATG	6 cut(s)	275, 466, 847, 858, 982, 1009
CviQI	GTAC	4 cut(s)	1155, 1233, 1289, 1305
DdeI	CTNAG	5 cut(s)	228, 354, 388, 472, 1149
DpnI	GATC	6 cut(s)	281, 303, 609, 959, 1073, 1218
DpnII	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
DraI	TTTAAA	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	1078
Eco24I	GRGCYC	2 cut(s)	465, 1080
Eco53kI	GAGCTC	1 cut(s)	1078
Eco57I	CTGAAG	2 cut(s)	459, 809
EcoICRI	GAGCTC	1 cut(s)	1078
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	4 cut(s)	265, 444, 747, 939
EcoT38I	GRGCYC	2 cut(s)	465, 1080
FaeI	CATG	6 cut(s)	278, 469, 850, 861, 985, 1012
FalI	AAGNNNNNCTT	8 cut(s)	245, 277, 1206, 1238, 1304, 1336, 1337, 1369
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	6 cut(s)	274, 465, 846, 857, 981, 1008
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	6 cut(s)	336, 565, 1029, 1128, 1146, 1266
FokI	GGATG	2 cut(s)	151, 1294
FriOI	GRGCYC	2 cut(s)	465, 1080
Fsp4HI	GCNGC	6 cut(s)	336, 565, 1029, 1128, 1146, 1266
FspBI	CTAG	2 cut(s)	584, 1131
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	6 cut(s)	336, 565, 1029, 1128, 1146, 1266
GsaI	CCCAGC	1 cut(s)	802
HapII	CCGG	1 cut(s)	305
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	6 cut(s)	278, 469, 850, 861, 985, 1012
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	1046
HinfI	GANTC	2 cut(s)	214, 364
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	68, 426
Hpy166II	GTNNAC	7 cut(s)	100, 250, 553, 730, 1141, 1155, 1337
Hpy188I	TCNGA	7 cut(s)	13, 38, 213, 391, 913, 1039, 1213
Hpy188III	TCNNGA	4 cut(s)	368, 665, 1009, 1069
Hpy8I	GTNNAC	7 cut(s)	100, 250, 553, 730, 1141, 1155, 1337
HpyAV	CCTTC	4 cut(s)	183, 505, 925, 1072
HpyCH4III	ACNGT	6 cut(s)	23, 97, 490, 772, 808, 999
HpyCH4V	TGCA	5 cut(s)	338, 730, 861, 973, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 1133, 1142
HpyF3I	CTNAG	5 cut(s)	228, 354, 388, 472, 1149
Hsp92II	CATG	6 cut(s)	278, 469, 850, 861, 985, 1012
HspAI	GCGC	1 cut(s)	308
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
LmnI	GCTCC	2 cut(s)	224, 541
Lsp1109I	GCAGC	6 cut(s)	322, 576, 1015, 1114, 1132, 1277
LweI	GCATC	1 cut(s)	1089
MaeI	CTAG	2 cut(s)	584, 1131
MaeIII	GTNAC	2 cut(s)	164, 432
MalI	GATC	6 cut(s)	281, 303, 609, 959, 1073, 1218
MboI	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
MboII	GAAGA	5 cut(s)	184, 452, 703, 1057, 1226
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	3 cut(s)	279, 301, 607
MhlI	GDGCHC	4 cut(s)	71, 465, 732, 1080
MlyI	GAGTC	2 cut(s)	223, 373
MmeI	TCCRAC	1 cut(s)	1016
MroXI	GAANNNNTTC	1 cut(s)	1016
MseI	TTAA	8 cut(s)	207, 249, 378, 572, 774, 899, 978, 1104
MspCI	CTTAAG	1 cut(s)	1103
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	4 cut(s)	267, 446, 749, 941
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	4 cut(s)	267, 446, 749, 941
MwoI	GCNNNNNNNGC	3 cut(s)	305, 1133, 1142
NdeII	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
NlaIII	CATG	6 cut(s)	278, 469, 850, 861, 985, 1012
NlaIV	GGNNCC	3 cut(s)	68, 543, 1019
NmuCI	GTSAC	1 cut(s)	432
NspI	RCATGY	2 cut(s)	861, 985
NspV	TTCGAA	1 cut(s)	741
PaeI	GCATGC	1 cut(s)	861
PagI	TCATGA	1 cut(s)	1008
PciI	ACATGT	1 cut(s)	981
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	1016
PfoI	TCCNGGA	3 cut(s)	265, 747, 939
PkrI	GCNGC	6 cut(s)	337, 566, 1030, 1129, 1147, 1267
PleI	GAGTC	2 cut(s)	222, 372
PpsI	GAGTC	2 cut(s)	222, 372
PscI	ACATGT	1 cut(s)	981
PshBI	ATTAAT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	1080
Psp6I	CCWGG	4 cut(s)	265, 444, 747, 939
PspFI	CCCAGC	1 cut(s)	798
PspGI	CCWGG	4 cut(s)	265, 444, 747, 939
PspN4I	GGNNCC	3 cut(s)	68, 543, 1019
PsuI	RGATCY	3 cut(s)	279, 301, 607
RsaI	GTAC	4 cut(s)	1156, 1234, 1290, 1306
RsaNI	GTAC	4 cut(s)	1155, 1233, 1289, 1305
SacI	GAGCTC	1 cut(s)	1080
SaqAI	TTAA	8 cut(s)	207, 249, 378, 572, 774, 899, 978, 1104
SatI	GCNGC	6 cut(s)	336, 565, 1029, 1128, 1146, 1266
Sau3AI	GATC	6 cut(s)	279, 301, 607, 957, 1071, 1216
SchI	GAGTC	2 cut(s)	223, 373
ScrFI	CCNGG	4 cut(s)	267, 446, 749, 941
SduI	GDGCHC	4 cut(s)	71, 465, 732, 1080
SfaNI	GCATC	1 cut(s)	1089
SfcI	CTRYAG	1 cut(s)	1367
SfuI	TTCGAA	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	1022, 1103
SmoI	CTYRAG	2 cut(s)	1022, 1103
SphI	GCATGC	1 cut(s)	861
SsiI	CCGC	1 cut(s)	587
SspMI	CTAG	2 cut(s)	584, 1131
SstI	GAGCTC	1 cut(s)	1080
StyD4I	CCNGG	4 cut(s)	265, 444, 747, 939
TaaI	ACNGT	6 cut(s)	23, 97, 490, 772, 808, 999
TaqI	TCGA	3 cut(s)	85, 741, 1074
TaqII	GACCGA	1 cut(s)	331
TatI	WGTACW	3 cut(s)	1154, 1232, 1304
Tru1I	TTAA	8 cut(s)	207, 249, 378, 572, 774, 899, 978, 1104
Tru9I	TTAA	8 cut(s)	207, 249, 378, 572, 774, 899, 978, 1104
TscAI	CASTG	4 cut(s)	495, 813, 1157, 1181
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	6 cut(s)	335, 564, 1028, 1127, 1145, 1265
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	6 cut(s)	155, 403, 513, 997, 1025, 1312
TspRI	CASTG	4 cut(s)	495, 813, 1157, 1181
Vha464I	CTTAAG	1 cut(s)	1103
VneI	GTGCAC	1 cut(s)	728
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	2 cut(s)	861, 985
XmiI	GTMKAC	1 cut(s)	1140
XmnI	GAANNNNTTC	1 cut(s)	1016
XspI	CTAG	2 cut(s)	584, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.