AT2G17710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014553
Physical Location & Seq
Forward (+)
7693596 .. 7694746
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17710.1

Sequence Viewer

Length: 459 bp
ATGAATATGAAGAAACAGATTATGGATGAGTCTGTAAAGTCATTGATGCTGCCTCCTCCTCCACCGCTTCTTCCTCCATCTCAGGGATATGGATCAAGAAAGATCGATGGAGACAGCATAACCAATAAACAGATCAAGAAGTTCTGGAGACAGAAGCAGATCATTGAAGAGGATCATCTCTATTCTGCTATTAAGGCTGCAGCTCGTGTCAGAGCTCGTAATCTCTCTGATGAGGACTACAAACGCTTTGAAGAAAGCTTGGACATGGAGGACCTGGAAACCGAAGATCATCAGGGATTGAAAGACTGGTGGACAAAGAGCAAATACGCGTACTTGAACCAGCCGGCTCTTGGATCTGCAGATTCACTGAAGAGAAAGAGGTTTTCGACTTATACACCAAACTGTTTCTCGTTCAAGCCTTGCAATCCTCTCTACGCAACTTCGCTCAATGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.65

Weight (kDa)

8.98

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 65
AclWI GGATC 3 cut(s) 100, 180, 361
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 83, 350
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 5 cut(s) 167, 251, 301, 337, 415
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 203, 215, 258
AluI AGCT 3 cut(s) 203, 215, 258
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 105, 142
AlwI GGATC 3 cut(s) 100, 180, 361
ApeKI GCWGC 3 cut(s) 49, 197, 200
AspS9I GGNCC 1 cut(s) 271
AvaII GGWCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 217
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 3 cut(s) 36, 184, 212
BccI CCATC 2 cut(s) 85, 101
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 105, 142
BfmI CTRYAG 2 cut(s) 198, 357
BisI GCNGC 3 cut(s) 50, 198, 201
BlsI GCNGC 3 cut(s) 51, 199, 202
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 350
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 91
BseBI CCWGG 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 105
BseGI GGATG 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 83, 350
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 45, 48
BseXI GCAGC 3 cut(s) 36, 184, 212
Bsh1236I CGCG 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 83, 350
BsmAI GTCTC 2 cut(s) 105, 142
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 329
BspMAI CTGCAG 2 cut(s) 202, 361
BspPI GGATC 3 cut(s) 100, 180, 361
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 2 cut(s) 162, 365
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 7 cut(s) 95, 105, 135, 162, 175, 289, 356
BstMAI GTCTC 2 cut(s) 105, 142
BstMBI GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 2 cut(s) 198, 357
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 3 cut(s) 36, 184, 212
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 265
CviJI RGCY 7 cut(s) 197, 203, 215, 258, 343, 347, 418
CviKI_1 RGCY 7 cut(s) 197, 203, 215, 258, 343, 347, 418
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 81
DpnI GATC 7 cut(s) 94, 104, 134, 161, 174, 288, 355
DpnII GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
Eam1104I CTCTTC 2 cut(s) 162, 365
EarI CTCTTC 2 cut(s) 162, 365
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 1 cut(s) 268
FaiI YATR 6 cut(s) 8, 23, 90, 119, 266, 393
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 50, 198, 201
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 3 cut(s) 50, 198, 201
GluI GCNGC 3 cut(s) 50, 198, 201
GsuI CTGGAG 1 cut(s) 166
HapII CCGG 1 cut(s) 344
Hin1II CATG 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 2 cut(s) 29, 362
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 212, 229
Hpy188III TCNNGA 3 cut(s) 96, 136, 145
Hpy8I GTNNAC 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4V TGCA 3 cut(s) 200, 359, 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 268
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Kzo9I GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
LpnPI CCDG 8 cut(s) 68, 130, 260, 278, 287, 292, 353, 357
Lsp1109I GCAGC 3 cut(s) 36, 184, 212
LweI GCATC 1 cut(s) 36
MalI GATC 7 cut(s) 94, 104, 134, 161, 174, 288, 355
MboI GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
MboII GAAGA 6 cut(s) 22, 62, 179, 263, 296, 382
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 217
MluI ACGCGT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 9 cut(s) 63, 66, 69, 84, 163, 226, 262, 372, 438
MroNI GCCGGC 1 cut(s) 343
MseI TTAA 1 cut(s) 192
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 194
NaeI GCCGGC 1 cut(s) 345
NdeII GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
NgoMIV GCCGGC 1 cut(s) 343
NlaIII CATG 1 cut(s) 268
PdiI GCCGGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 3 cut(s) 51, 199, 202
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 2 cut(s) 202, 361
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 50, 198, 201
Sau3AI GATC 7 cut(s) 92, 102, 132, 159, 172, 286, 353
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 217
SetI ASST 5 cut(s) 205, 217, 260, 276, 383
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 2 cut(s) 198, 357
SinI GGWCC 1 cut(s) 271
SsiI CCGC 1 cut(s) 65
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 404
TaqI TCGA 2 cut(s) 105, 386
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 372
TseI GCWGC 3 cut(s) 49, 197, 200
TspDTI ATGAA 2 cut(s) 17, 23
TspRI CASTG 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.