Rorug02G0072300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014553
Physical Location & Seq
Forward (+)
5689506 .. 5691596
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0072300.1

Sequence Viewer

Length: 1251 bp
ATGGCTGCTCTAGCAGAGCCAGCCTTTGTTTCAGAACAGGAAAAGAAGGAGGAGAAGAACAGGAAGAGAGAGGCCAAAAACAAGGAGCACAATGAGAGGATAAAGATGGAGAAAGAGAAGGAAGAAAAGAAGAACAGGGAAAAAGAACTCCAATTGATAGCAAACTTTAGAAATAATGGTCAAAACCATAAGGAACTTCCAAGAATTCCTGTGACTCATGCTGTTGCTTCGGCAAAGCCGCAGTCCCAAGCCCCGAAAGCTCATGTCAAAGCGGCCCAGACTCCTCTTCCTGTTGCTTCTGCGAAGATGACGGTGCCAACTAGTACTACTCATGCCTCCACTGTGCATCCTACTCCTGTTGCCTGGGCAAAGGTGGTGCCAAATAGTACTACCAATGCCTCTAAAAAGACAGATTTTAGTCAGCAGTCCCAGACCCAGAGTGTTGCTCCTGCCAAAGCAGCTGTACCTTCTCTTCCTATTGCTTCTGGGAAGTCGCTGACCGATGCTTCTAAGATGTCTAACATCAATCACTATCAACAACAACCTGCTGCTACTGGCTCCACAGATATGACTTTCTACGTCGGGCAAATCCCTGTAAAGAGTACAGCAATCAATAATCCACCAAAAGCTAATATTTTGTTTGGGAGGAAGGAGACTCAAGCCACTACTGTTGTGGAAAAAACTCAGGCCACTACTGTTGTGATGACTTATGCAAGTGCCTTGCAAAACAAGGCTGCGGATGCTCAGAAAAACCTAGGCACCTACAATGCAGCAGCATCTACATTTGTTCCTATGACTACTTCGGTGACTACTACTCTTCCTGTTGTTCCTCAGACCAATCAACCTGCAAAGGAAGAAGTAGTAGTTCCTGCAATAAAGACTACTAACGGCCAGAATGGTCCTGTAAGACCTATGTCCAGTACTACTACTTCCGTCTCTTCAGAGAGATCCTATTACACTGGTACCCAGAGGAATAGTAATGGACCAGATCAGAAGAACTATGGGAATGGAAGGGTTATTAACGGCGGTGGAAACGGTTCCAGTCAAAAGTACTATGGTAATGGTTCCGGCCAAAGGTACTATGGTAATGGTTCTGGCCAGAGGTACAATGGTAATGGTTATGGCCAGAGGTACTATCGTAATGGAAGGTATACCAATGGGAGTCAAGAGAATCAGAAAAAACAAGCAAAACCAAAGCCTGTTATTGATGCCGAGGGGTGGCAAGTGGTAGAGAATCGAAGGAGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

45.18

Weight (kDa)

9.98

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 553, 853
Acc65I GGTACC 1 cut(s) 962
AccB1I GGYRCC 4 cut(s) 313, 376, 758, 962
AccI GTMKAC 1 cut(s) 1151
AciI CCGC 4 cut(s) 239, 272, 737, 1026
AclWI GGATC 1 cut(s) 942
AcoI YGGCCR 4 cut(s) 889, 1069, 1096, 1123
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 924
AfiI CCNNNNNNNGG 2 cut(s) 1074, 1218
AhlI ACTAGT 1 cut(s) 320
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 3 cut(s) 260, 461, 629
AluI AGCT 3 cut(s) 260, 461, 629
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 647, 940
AlwI GGATC 1 cut(s) 942
AoxI GGCC 7 cut(s) 72, 273, 687, 889, 1069, 1096, 1123
ApeKI GCWGC 6 cut(s) 5, 458, 548, 734, 770, 773
ApoI RAATTY 1 cut(s) 204
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
Asp700I GAANNNNTTC 1 cut(s) 1036
Asp718I GGTACC 1 cut(s) 962
AspA2I CCTAGG 1 cut(s) 754
AspS9I GGNCC 3 cut(s) 274, 899, 983
AsuHPI GGTGA 1 cut(s) 817
AvaII GGWCC 2 cut(s) 899, 983
AvrII CCTAGG 1 cut(s) 754
BaeI ACNNNNGTAYC 8 cut(s) 946, 979, 1069, 1096, 1102, 1123, 1129, 1156
BalI TGGCCA 2 cut(s) 1098, 1125
BanI GGYRCC 4 cut(s) 313, 376, 758, 962
BarI GAAGNNNNNNTAC 4 cut(s) 456, 488, 913, 945
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 5 cut(s) 470, 535, 721, 782, 785
BccI CCATC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 904, 1039
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 647, 940
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 3 cut(s) 11, 321, 755
BfuAI ACCTGC 2 cut(s) 553, 853
BisI GCNGC 8 cut(s) 6, 239, 273, 459, 549, 735, 771, 774
BlnI CCTAGG 1 cut(s) 754
BlsI GCNGC 8 cut(s) 7, 240, 274, 460, 550, 736, 772, 775
BmcAI AGTACT 4 cut(s) 325, 388, 922, 1052
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 2 cut(s) 899, 983
BmgT120I GGNCC 3 cut(s) 274, 899, 983
BmiI GGNNCC 7 cut(s) 315, 378, 559, 760, 964, 1039, 1066
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 5 cut(s) 355, 493, 730, 785, 1198
BoxI GACNNNNGTC 1 cut(s) 913
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpuEI CTTGAG 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 363, 754, 1212
Bsc4I CCNNNNNNNGG 2 cut(s) 1074, 1218
Bse1I ACTGG 4 cut(s) 559, 918, 964, 1041
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 3 cut(s) 363, 754, 1212
BseGI GGATG 2 cut(s) 346, 745
BseLI CCNNNNNNNGG 2 cut(s) 1074, 1218
BseMII CTCAG 3 cut(s) 698, 758, 845
BseNI ACTGG 4 cut(s) 559, 918, 964, 1041
BseRI GAGGAG 2 cut(s) 65, 273
BseXI GCAGC 5 cut(s) 470, 535, 721, 782, 785
BshFI GGCC 7 cut(s) 74, 275, 689, 891, 1071, 1098, 1125
BshNI GGYRCC 4 cut(s) 313, 376, 758, 962
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 1068
BslFI GGGAC 2 cut(s) 229, 412
BslI CCNNNNNNNGG 2 cut(s) 1074, 1218
BsmAI GTCTC 2 cut(s) 647, 940
BsmBI CGTCTC 1 cut(s) 940
BsmFI GGGAC 2 cut(s) 229, 412
BsnI GGCC 7 cut(s) 74, 275, 689, 891, 1071, 1098, 1125
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 947, 988
BspACI CCGC 4 cut(s) 239, 272, 737, 1026
BspANI GGCC 7 cut(s) 74, 275, 689, 891, 1071, 1098, 1125
BspCNI CTCAG 3 cut(s) 697, 757, 844
BspLI GGNNCC 7 cut(s) 315, 378, 559, 760, 964, 1039, 1066
BspMI ACCTGC 2 cut(s) 553, 853
BspPI GGATC 1 cut(s) 942
BspT107I GGYRCC 4 cut(s) 313, 376, 758, 962
BsrI ACTGG 4 cut(s) 559, 918, 964, 1041
BssECI CCNNGG 3 cut(s) 363, 754, 1212
BssMI GATC 2 cut(s) 947, 988
BssNAI GTATAC 1 cut(s) 1152
BssT1I CCWWGG 1 cut(s) 754
Bst1107I GTATAC 1 cut(s) 1152
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 5 cut(s) 313, 343, 670, 697, 1037
Bst6I CTCTTC 5 cut(s) 59, 291, 477, 822, 943
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 4 cut(s) 510, 684, 744, 831
BstF5I GGATG 2 cut(s) 346, 745
BstKTI GATC 2 cut(s) 950, 991
BstMAI GTCTC 2 cut(s) 647, 940
BstMBI GATC 2 cut(s) 947, 988
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 257, 458, 740
BstNI CCWGG 1 cut(s) 364
BstPAI GACNNNNGTC 1 cut(s) 913
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 5 cut(s) 470, 535, 721, 782, 785
BstX2I RGATCY 1 cut(s) 947
BstYI RGATCY 1 cut(s) 947
BstZ17I GTATAC 1 cut(s) 1152
BsuRI GGCC 7 cut(s) 74, 275, 689, 891, 1071, 1098, 1125
BtsCI GGATG 2 cut(s) 346, 745
BtsIMutI CAGTG 2 cut(s) 339, 957
BveI ACCTGC 2 cut(s) 553, 853
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 3 cut(s) 274, 899, 983
CspCI CAANNNNNGTGG 4 cut(s) 652, 679, 687, 714
CviAII CATG 3 cut(s) 218, 263, 332
DdeI CTNAG 4 cut(s) 510, 684, 744, 831
DpnI GATC 2 cut(s) 949, 990
DpnII GATC 2 cut(s) 947, 988
EaeI YGGCCR 4 cut(s) 889, 1069, 1096, 1123
Eam1104I CTCTTC 5 cut(s) 59, 291, 477, 822, 943
EarI CTCTTC 5 cut(s) 59, 291, 477, 822, 943
Eco130I CCWWGG 1 cut(s) 754
Eco47I GGWCC 2 cut(s) 899, 983
Eco57I CTGAAG 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 754
ErhI CCWWGG 1 cut(s) 754
Esp3I CGTCTC 1 cut(s) 940
FaeI CATG 3 cut(s) 221, 266, 335
FaqI GGGAC 2 cut(s) 229, 412
FatI CATG 3 cut(s) 217, 262, 331
FblI GTMKAC 1 cut(s) 1151
Fnu4HI GCNGC 8 cut(s) 6, 239, 273, 459, 549, 735, 771, 774
FokI GGATG 2 cut(s) 333, 752
Fsp4HI GCNGC 8 cut(s) 6, 239, 273, 459, 549, 735, 771, 774
FspBI CTAG 3 cut(s) 11, 321, 755
GluI GCNGC 8 cut(s) 6, 239, 273, 459, 549, 735, 771, 774
HaeIII GGCC 7 cut(s) 74, 275, 689, 891, 1071, 1098, 1125
HapII CCGG 1 cut(s) 1068
Hin1II CATG 3 cut(s) 221, 266, 335
HinfI GANTC 6 cut(s) 214, 280, 655, 1162, 1171, 1234
HpaII CCGG 1 cut(s) 1068
HphI GGTGA 1 cut(s) 817
Hpy166II GTNNAC 1 cut(s) 1152
Hpy188I TCNGA 7 cut(s) 34, 747, 834, 943, 993, 1176, 1250
Hpy188III TCNNGA 1 cut(s) 1166
Hpy8I GTNNAC 1 cut(s) 1152
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 7 cut(s) 40, 112, 477, 643, 1005, 1140, 1233
HpyCH4III ACNGT 5 cut(s) 313, 343, 670, 697, 1037
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 6 cut(s) 346, 713, 724, 770, 848, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 257, 458, 740
HpyF3I CTNAG 4 cut(s) 510, 684, 744, 831
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 3 cut(s) 221, 266, 335
KpnI GGTACC 1 cut(s) 966
Kzo9I GATC 2 cut(s) 947, 988
LmnI GCTCC 3 cut(s) 85, 451, 563
Lsp1109I GCAGC 5 cut(s) 470, 535, 721, 782, 785
LweI GCATC 5 cut(s) 355, 493, 730, 785, 1198
MaeI CTAG 3 cut(s) 11, 321, 755
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 2 cut(s) 211, 805
MalI GATC 2 cut(s) 949, 990
MboI GATC 2 cut(s) 947, 988
MfeI CAATTG 1 cut(s) 152
MflI RGATCY 1 cut(s) 947
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 2 cut(s) 1098, 1125
MluCI AATT 2 cut(s) 152, 204
MluNI TGGCCA 2 cut(s) 1098, 1125
MlyI GAGTC 4 cut(s) 208, 274, 649, 1171
Mox20I TGGCCA 2 cut(s) 1098, 1125
MroXI GAANNNNTTC 1 cut(s) 1036
MscI TGGCCA 2 cut(s) 1098, 1125
MseI TTAA 1 cut(s) 1020
MslI CAYNNNNRTG 1 cut(s) 566
Msp20I TGGCCA 2 cut(s) 1098, 1125
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 1 cut(s) 1068
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 257, 458, 740
NdeII GATC 2 cut(s) 947, 988
NlaIII CATG 3 cut(s) 221, 266, 335
NlaIV GGNNCC 7 cut(s) 315, 378, 559, 760, 964, 1039, 1066
NmeAIII GCCGAG 1 cut(s) 1237
NmuCI GTSAC 2 cut(s) 211, 805
PdmI GAANNNNTTC 1 cut(s) 1036
PfeI GAWTC 2 cut(s) 1171, 1234
PkrI GCNGC 8 cut(s) 7, 240, 274, 460, 550, 736, 772, 775
PleI GAGTC 4 cut(s) 208, 274, 649, 1170
PpsI GAGTC 4 cut(s) 208, 274, 649, 1170
PshAI GACNNNNGTC 1 cut(s) 913
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 7 cut(s) 315, 378, 559, 760, 964, 1039, 1066
PspPI GGNCC 3 cut(s) 274, 899, 983
PsuI RGATCY 1 cut(s) 947
PvuII CAGCTG 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 1 cut(s) 1020
SatI GCNGC 8 cut(s) 6, 239, 273, 459, 549, 735, 771, 774
Sau3AI GATC 2 cut(s) 947, 988
Sau96I GGNCC 3 cut(s) 274, 899, 983
ScaI AGTACT 4 cut(s) 325, 388, 922, 1052
SchI GAGTC 4 cut(s) 208, 274, 649, 1171
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 5 cut(s) 355, 493, 730, 785, 1198
SinI GGWCC 2 cut(s) 899, 983
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 657
SmoI CTYRAG 1 cut(s) 657
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 2 cut(s) 152, 204
SsiI CCGC 4 cut(s) 239, 272, 737, 1026
SspI AATATT 1 cut(s) 634
SspMI CTAG 3 cut(s) 11, 321, 755
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 754
TaaI ACNGT 5 cut(s) 313, 343, 670, 697, 1037
TaiI ACGT 1 cut(s) 582
TaqI TCGA 1 cut(s) 1237
TaqII GACCGA 1 cut(s) 515
TasI AATT 2 cut(s) 152, 204
TatI WGTACW 5 cut(s) 323, 386, 602, 920, 1050
TauI GCSGC 2 cut(s) 241, 275
TfiI GAWTC 2 cut(s) 1171, 1234
Tru1I TTAA 1 cut(s) 1020
Tru9I TTAA 1 cut(s) 1020
TscAI CASTG 2 cut(s) 346, 964
TseFI GTSAC 2 cut(s) 211, 805
TseI GCWGC 6 cut(s) 5, 458, 548, 734, 770, 773
Tsp45I GTSAC 2 cut(s) 211, 805
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 2 cut(s) 346, 964
VpaK11BI GGWCC 2 cut(s) 899, 983
XapI RAATTY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 3 cut(s) 670, 1079, 1106
XmaJI CCTAGG 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 1151
XmnI GAANNNNTTC 1 cut(s) 1036
XspI CTAG 3 cut(s) 11, 321, 755
ZrmI AGTACT 4 cut(s) 325, 388, 922, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.