Rh2AG119400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014553
Physical Location & Seq
Forward (+)
10742440 .. 10743388
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG119400.1

Sequence Viewer

Length: 591 bp
ATGAAGATGAAGCAAATTGAGCAGGAGAGTGGAAAGTGCTGTGTCGAGAGAAAACAAGTGATTTCATCACCACCGCCTCCGCCACCACCATTCCCAAGGTTCTTGGCTAATCAGAGTGTTGTTGAGAGTGTGACAAGGCGAGAAATCGCCAGGTTCTGGACGCAGAAGCGCTTTAATGAGGAGGAGCACCTCCTCGCAGCGATCAAGGCTGCAGCACGCATTAGAGCCCGCAAACTCTCGGAGGAAGACTACAGATCTTTTGAGGAGTCCTTGAATGATGAAGACAACGATGGCAAGGATAGTGACGGCGCAGTCAAAACGAATGAGAACAATGATGAAATTCGTGTTGGAATAAAGGACTGGTTAGTTATTTTCTCAATCAATCAAACAAAGAGAGCCAGGTCATACAGTTTCCTTAACAGTAAACTTTCAAATAACATGTGCAGGTGGACAAAAAGCAAGTATGCATACTTGAACCAGCCAGATATTGATTCCAAGGAGCCTCCAAAAAGGCGCAGCTCCACATTTGTTCCTAATTGCTTTGCTTATAAGCCAACTCCTCTGTACCCAACCTCTCTTGGTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.67

Weight (kDa)

9.24

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AarI CACCTGC 1 cut(s) 435
AasI GACNNNNNNGTC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 435
AccB7I CCANNNNNTGG 1 cut(s) 156
AciI CCGC 3 cut(s) 74, 80, 229
AcsI RAATTY 1 cut(s) 339
AfaI GTAC 1 cut(s) 566
AfeI AGCGCT 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 3 cut(s) 274, 432, 475
AjnI CCWGG 2 cut(s) 149, 398
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 519
AluI AGCT 1 cut(s) 519
Alw21I GWGCWC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 197, 209, 212, 516
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 3 cut(s) 171, 311, 516
AsuHPI GGTGA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 252, 288
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 4 cut(s) 196, 209, 224, 528
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 2 cut(s) 151, 400
BfmI CTRYAG 2 cut(s) 210, 250
BfoI RGCGCY 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 435
BglII AGATCT 1 cut(s) 254
BisI GCNGC 4 cut(s) 198, 210, 213, 517
BlsI GCNGC 4 cut(s) 199, 211, 214, 518
Bme1390I CCNGG 2 cut(s) 151, 400
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 2 cut(s) 151, 400
BpiI GAAGAC 2 cut(s) 252, 288
BsaJI CCNNGG 2 cut(s) 95, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 365
BseBI CCWGG 2 cut(s) 151, 400
BseDI CCNNGG 2 cut(s) 95, 495
BseLI CCNNNNNNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 5 cut(s) 182, 194, 197, 278, 549
BseXI GCAGC 4 cut(s) 196, 209, 224, 528
BsgI GTGCAG 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 189, 229
Bsp143I GATC 2 cut(s) 201, 254
BspACI CCGC 3 cut(s) 74, 80, 229
BspLI GGNNCC 1 cut(s) 501
BspMAI CTGCAG 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 435
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 95, 495
BssMI GATC 2 cut(s) 201, 254
BssT1I CCWWGG 2 cut(s) 95, 495
Bst2UI CCWGG 2 cut(s) 151, 400
Bst4CI ACNGT 2 cut(s) 410, 422
BstC8I GCNNGC 2 cut(s) 217, 229
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 3 cut(s) 171, 311, 516
BstKTI GATC 2 cut(s) 204, 257
BstMBI GATC 2 cut(s) 201, 254
BstMWI GCNNNNNNNGC 2 cut(s) 19, 206
BstNI CCWGG 2 cut(s) 151, 400
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 149, 398
BstSFI CTRYAG 2 cut(s) 210, 250
BstV1I GCAGC 4 cut(s) 196, 209, 224, 528
BstV2I GAAGAC 2 cut(s) 252, 288
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 217, 229
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 3 cut(s) 171, 311, 516
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 565
CviAII CATG 1 cut(s) 439
CviJI RGCY 8 cut(s) 107, 209, 227, 398, 481, 502, 519, 553
CviKI_1 RGCY 8 cut(s) 107, 209, 227, 398, 481, 502, 519, 553
CviQI GTAC 1 cut(s) 565
DpnI GATC 2 cut(s) 203, 256
DpnII GATC 2 cut(s) 201, 254
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 95, 495
Eco24I GRGCYC 1 cut(s) 229
Eco47III AGCGCT 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 149, 398
EcoT14I CCWWGG 2 cut(s) 95, 495
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 95, 495
FaeI CATG 1 cut(s) 442
FaiI YATR 5 cut(s) 406, 440, 465, 469, 549
FatI CATG 1 cut(s) 438
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 4 cut(s) 198, 210, 213, 517
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 198, 210, 213, 517
GlaI GCGC 3 cut(s) 170, 310, 515
GluI GCNGC 4 cut(s) 198, 210, 213, 517
HaeII RGCGCY 1 cut(s) 172
HgaI GACGC 1 cut(s) 169
HhaI GCGC 3 cut(s) 171, 311, 516
Hin1II CATG 1 cut(s) 442
Hin6I GCGC 3 cut(s) 169, 309, 514
HinP1I GCGC 3 cut(s) 169, 309, 514
HinfI GANTC 2 cut(s) 266, 491
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 425, 450
Hpy188I TCNGA 2 cut(s) 114, 241
Hpy188III TCNNGA 2 cut(s) 46, 157
Hpy8I GTNNAC 2 cut(s) 425, 450
HpyCH4III ACNGT 2 cut(s) 410, 422
HpyCH4V TGCA 3 cut(s) 212, 444, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 206
Hsp92II CATG 1 cut(s) 442
HspAI GCGC 3 cut(s) 169, 309, 514
Kzo9I GATC 2 cut(s) 201, 254
LmnI GCTCC 3 cut(s) 184, 499, 524
Lsp1109I GCAGC 4 cut(s) 196, 209, 224, 528
MaeIII GTNAC 2 cut(s) 130, 302
MalI GATC 2 cut(s) 203, 256
MboI GATC 2 cut(s) 201, 254
MboII GAAGA 3 cut(s) 16, 257, 293
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 189, 229
MluCI AATT 3 cut(s) 15, 339, 535
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 328
Mph1103I ATGCAT 1 cut(s) 469
MseI TTAA 3 cut(s) 174, 417, 589
MspR9I CCNGG 2 cut(s) 151, 400
MvaI CCWGG 2 cut(s) 151, 400
MwoI GCNNNNNNNGC 2 cut(s) 19, 206
NdeII GATC 2 cut(s) 201, 254
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 2 cut(s) 130, 302
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 435
PciI ACATGT 1 cut(s) 438
PfeI GAWTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 4 cut(s) 199, 211, 214, 518
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 438
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 149, 398
PspGI CCWGG 2 cut(s) 149, 398
PspN4I GGNNCC 1 cut(s) 501
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SaqAI TTAA 3 cut(s) 174, 417, 589
SatI GCNGC 4 cut(s) 198, 210, 213, 517
Sau3AI GATC 2 cut(s) 201, 254
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 151, 400
SduI GDGCHC 2 cut(s) 189, 229
SetI ASST 7 cut(s) 101, 155, 192, 404, 449, 521, 575
SfcI CTRYAG 2 cut(s) 210, 250
Sse9I AATT 3 cut(s) 15, 339, 535
SsiI CCGC 3 cut(s) 74, 80, 229
StyD4I CCNGG 2 cut(s) 149, 398
StyI CCWWGG 2 cut(s) 95, 495
TaaI ACNGT 2 cut(s) 410, 422
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 15, 339, 535
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 3 cut(s) 174, 417, 589
Tru9I TTAA 3 cut(s) 174, 417, 589
TseFI GTSAC 2 cut(s) 130, 302
TseI GCWGC 4 cut(s) 197, 209, 212, 516
Tsp45I GTSAC 2 cut(s) 130, 302
TspDTI ATGAA 5 cut(s) 17, 23, 54, 294, 351
Van91I CCANNNNNTGG 1 cut(s) 156
XapI RAATTY 1 cut(s) 339
XceI RCATGY 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.