Prupe.7G175000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014553
Physical Location & Seq
Reverse (-)
17452955 .. 17454437
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G175000.1

Sequence Viewer

Length: 492 bp
ATGAAGATGAAGCAAATAGAGGAGGCACCGGCGTCACCGCCTCCACCACCACCACCACTTCCAAGGTTCTGGGCTAAGAAGGCTGCGCCGGAGAGTGTGACAAAGCGAGAAATTGCCAGGTTCTGGTTTCAGAAGCGCATTGAGGAAGAGGAGCACCTCCTCGCTGCTATCAAGGCTGCAGCACGTATTAGAGCCCTCAAGCTCTCGGAGGAAGATTACAGACGTTTTGAGGAGTCCTTGGACAACGACGACGACAAAGCCAATGGTAAGGATAGCTCTGCTGCAGCCACTAATGACAGCAACAAGGATGGAAAGAACGACGAAGTTCGTGTTGGGATTAAGGACTGGTGGACAAAGAGCAAGTATGCATACTTGAACCAGCCAGCCATAGAGTCCATGGAGCCTCCGAAAAGGCGCACCTCCGCATATGTTCCCAATTGTTTTGCCTATAAGCCAACCCCTCTCTACCCTACCTCTCTTGGTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.6

Weight (kDa)

8.87

Isoelectric Point (pI)

70.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 123
AciI CCGC 2 cut(s) 38, 423
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 2 cut(s) 202, 276
AluI AGCT 2 cut(s) 202, 276
Alw21I GWGCWC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 123
ApeKI GCWGC 6 cut(s) 83, 164, 176, 179, 281, 284
AspLEI GCGC 3 cut(s) 88, 138, 417
AsuHPI GGTGA 1 cut(s) 27
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 6 cut(s) 70, 151, 163, 191, 268, 296
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 118
BfmI CTRYAG 2 cut(s) 177, 282
BisI GCNGC 6 cut(s) 84, 165, 177, 180, 282, 285
BlsI GCNGC 6 cut(s) 85, 166, 178, 181, 283, 286
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 27, 402
BmrFI CCNGG 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 62, 237, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 62, 237, 396
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 4 cut(s) 35, 149, 164, 245
BseXI GCAGC 6 cut(s) 70, 151, 163, 191, 268, 296
BshNI GGYRCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 29, 89
BslI CCNNNNNNNGG 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 156, 196
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 38, 423
BspLI GGNNCC 2 cut(s) 27, 402
BspMAI CTGCAG 2 cut(s) 181, 286
BspT107I GGYRCC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 62, 237, 396
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 3 cut(s) 62, 237, 396
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 3 cut(s) 88, 138, 417
BstMWI GCNNNNNNNGC 2 cut(s) 80, 173
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 2 cut(s) 177, 282
BstV1I GCAGC 6 cut(s) 70, 151, 163, 191, 268, 296
BstXI CCANNNNNNTGG 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 123
CfoI GCGC 3 cut(s) 88, 138, 417
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 1 cut(s) 21
CviAII CATG 1 cut(s) 397
DdeI CTNAG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 3 cut(s) 62, 237, 396
Eco24I GRGCYC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 3 cut(s) 62, 237, 396
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 3 cut(s) 62, 237, 396
FaeI CATG 1 cut(s) 400
FaiI YATR 7 cut(s) 366, 370, 389, 398, 427, 429, 450
FatI CATG 1 cut(s) 396
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 6 cut(s) 84, 165, 177, 180, 282, 285
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 6 cut(s) 84, 165, 177, 180, 282, 285
GlaI GCGC 3 cut(s) 87, 137, 416
GluI GCNGC 6 cut(s) 84, 165, 177, 180, 282, 285
HapII CCGG 2 cut(s) 29, 89
HgaI GACGC 1 cut(s) 21
HhaI GCGC 3 cut(s) 88, 138, 417
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 3 cut(s) 86, 136, 415
HinP1I GCGC 3 cut(s) 86, 136, 415
HinfI GANTC 2 cut(s) 233, 392
HpaII CCGG 2 cut(s) 29, 89
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 3 cut(s) 132, 208, 408
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 3 cut(s) 251, 254, 323
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 2 cut(s) 184, 223
HpyCH4V TGCA 3 cut(s) 179, 284, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 173
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 184, 223
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 3 cut(s) 86, 136, 415
LmnI GCTCC 2 cut(s) 151, 400
LpnPI CCDG 9 cut(s) 42, 55, 102, 103, 109, 130, 331, 392, 396
Lsp1109I GCAGC 6 cut(s) 70, 151, 163, 191, 268, 296
MaeII ACGT 2 cut(s) 184, 223
MaeIII GTNAC 2 cut(s) 33, 97
MboII GAAGA 3 cut(s) 16, 158, 224
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 156, 196
MluCI AATT 2 cut(s) 111, 436
MlyI GAGTC 2 cut(s) 242, 401
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 1 cut(s) 339
MspI CCGG 2 cut(s) 29, 89
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 80, 173
NcoI CCATGG 1 cut(s) 396
NdeI CATATG 1 cut(s) 427
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 2 cut(s) 27, 402
NmuCI GTSAC 2 cut(s) 33, 97
NsiI ATGCAT 1 cut(s) 370
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 6 cut(s) 85, 166, 178, 181, 283, 286
PleI GAGTC 2 cut(s) 241, 400
PpsI GAGTC 2 cut(s) 241, 400
Ppu21I YACGTR 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 27, 402
PstI CTGCAG 2 cut(s) 181, 286
PstNI CAGNNNCTG 1 cut(s) 123
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 6 cut(s) 84, 165, 177, 180, 282, 285
SchI GAGTC 2 cut(s) 242, 401
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 156, 196
SetI ASST 9 cut(s) 68, 122, 159, 187, 204, 226, 278, 422, 476
SfcI CTRYAG 2 cut(s) 177, 282
SgrAI CRCCGGYG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 111, 436
SsiI CCGC 2 cut(s) 38, 423
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 3 cut(s) 62, 237, 396
TaiI ACGT 2 cut(s) 187, 226
TasI AATT 2 cut(s) 111, 436
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 2 cut(s) 33, 97
TseI GCWGC 6 cut(s) 83, 164, 176, 179, 281, 284
Tsp45I GTSAC 2 cut(s) 33, 97
TspDTI ATGAA 2 cut(s) 17, 23
Van91I CCANNNNNTGG 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.