FvH4_1g11080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014553
Physical Location & Seq
Forward (+)
6046915 .. 6048614
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11080.t1

Sequence Viewer

Length: 513 bp
ATGAACATGAAGCTAAAGGAGCAGGAAAGTGGAAAGTGCTGTGTCAAGAGAAAACAGATGAGTTCATCACCATCGCCGCCACCTCCGCCGCCACCGTTTCCAAGGTTCTTGGCTAAGAAGAGTGTTGTTGAGAGTGTGACAAAGAGAGAAATCGACAGGTTCTGGACGCTGAAGCGTATTAATGAGGAGGAGCACCTCCTCGCAGCGATCAAGGCTGCAGCACGCATTAGAGCTCGAAAACTCTCGGAGGAAGACTACAGATCTTTTGAGGAGTCCTTGAATGATGAAGACAACGATGGCAAGGATAGAGACGCCGCAGTCAAAACAAATGAGAACAATGATGTGATTCGTGTTGGAATTAAGGACTGGTGGACAAAGAGCAAGTATGCATACTTGAACCAGCCAGATATGGATTCCAAGGAGCCTCCAAAAAGGCGTAGCTCCACATTTATTCCTAATTGCTTTGCTTATAAGCCAACGCCTCTGTACCCAACCTCTCTTGGTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.64

Weight (kDa)

9.3

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AasI GACNNNNNNGTC 1 cut(s) 317
AciI CCGC 4 cut(s) 77, 86, 89, 315
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 1 cut(s) 488
AgsI TTSAA 2 cut(s) 280, 397
AluBI AGCT 3 cut(s) 13, 233, 441
AluI AGCT 3 cut(s) 13, 233, 441
Alw21I GWGCWC 2 cut(s) 195, 235
Alw26I GTCTC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 203, 215, 218
AseI ATTAAT 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 258, 294
Bbv12I GWGCWC 2 cut(s) 195, 235
BbvI GCAGC 3 cut(s) 202, 215, 230
BccI CCATC 2 cut(s) 79, 290
BcoDI GTCTC 1 cut(s) 303
BfmI CTRYAG 2 cut(s) 216, 256
BglII AGATCT 1 cut(s) 260
BisI GCNGC 6 cut(s) 77, 89, 204, 216, 219, 315
BlsI GCNGC 6 cut(s) 78, 90, 205, 217, 220, 316
BmiI GGNNCC 1 cut(s) 423
BpiI GAAGAC 2 cut(s) 258, 294
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 101, 417
Bse1I ACTGG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 101, 417
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 4 cut(s) 188, 200, 203, 284
BseXI GCAGC 3 cut(s) 202, 215, 230
BsiHKAI GWGCWC 2 cut(s) 195, 235
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 195, 235
Bsp143I GATC 2 cut(s) 207, 260
BspACI CCGC 4 cut(s) 77, 86, 89, 315
BspLI GGNNCC 1 cut(s) 423
BspMAI CTGCAG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 101, 417
BssMI GATC 2 cut(s) 207, 260
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 101, 417
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 2 cut(s) 210, 263
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 2 cut(s) 207, 260
BstMWI GCNNNNNNNGC 3 cut(s) 19, 85, 212
BstSFI CTRYAG 2 cut(s) 216, 256
BstV1I GCAGC 3 cut(s) 202, 215, 230
BstV2I GAAGAC 2 cut(s) 258, 294
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 162
CseI GACGC 2 cut(s) 175, 320
Csp6I GTAC 1 cut(s) 487
CviAII CATG 1 cut(s) 7
CviJI RGCY 8 cut(s) 13, 113, 215, 233, 403, 424, 441, 475
CviKI_1 RGCY 8 cut(s) 13, 113, 215, 233, 403, 424, 441, 475
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 209, 262
DpnII GATC 2 cut(s) 207, 260
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 101, 417
Eco24I GRGCYC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 101, 417
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 101, 417
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 1 cut(s) 10
FaiI YATR 5 cut(s) 8, 387, 391, 410, 471
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 6 cut(s) 77, 89, 204, 216, 219, 315
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 6 cut(s) 77, 89, 204, 216, 219, 315
GluI GCNGC 6 cut(s) 77, 89, 204, 216, 219, 315
HgaI GACGC 2 cut(s) 175, 320
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 10
HinfI GANTC 3 cut(s) 272, 346, 413
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 46, 163
Hpy8I GTNNAC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 218, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 85, 212
HpyF3I CTNAG 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 2 cut(s) 207, 260
LmnI GCTCC 4 cut(s) 19, 190, 421, 446
LpnPI CCDG 6 cut(s) 8, 142, 148, 352, 413, 417
Lsp1109I GCAGC 3 cut(s) 202, 215, 230
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 209, 262
MboI GATC 2 cut(s) 207, 260
MboII GAAGA 3 cut(s) 130, 263, 299
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 195, 235
MluCI AATT 2 cut(s) 357, 457
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 334
Mph1103I ATGCAT 1 cut(s) 391
MseI TTAA 3 cut(s) 180, 360, 511
MwoI GCNNNNNNNGC 3 cut(s) 19, 85, 212
NdeII GATC 2 cut(s) 207, 260
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 391
PfeI GAWTC 2 cut(s) 346, 413
PkrI GCNGC 6 cut(s) 78, 90, 205, 217, 220, 316
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 180
PsiI TTATAA 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 423
PstI CTGCAG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SacI GAGCTC 1 cut(s) 235
SaqAI TTAA 3 cut(s) 180, 360, 511
SatI GCNGC 6 cut(s) 77, 89, 204, 216, 219, 315
Sau3AI GATC 2 cut(s) 207, 260
SchI GAGTC 1 cut(s) 281
SduI GDGCHC 2 cut(s) 195, 235
SetI ASST 8 cut(s) 15, 85, 107, 161, 198, 235, 443, 497
SfcI CTRYAG 2 cut(s) 216, 256
Sse9I AATT 2 cut(s) 357, 457
SsiI CCGC 4 cut(s) 77, 86, 89, 315
SstI GAGCTC 1 cut(s) 235
StyI CCWWGG 2 cut(s) 101, 417
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 153, 235
TasI AATT 2 cut(s) 357, 457
TauI GCSGC 3 cut(s) 79, 91, 317
TfiI GAWTC 2 cut(s) 346, 413
Tru1I TTAA 3 cut(s) 180, 360, 511
Tru9I TTAA 3 cut(s) 180, 360, 511
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 3 cut(s) 203, 215, 218
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 4 cut(s) 17, 23, 54, 300
VspI ATTAAT 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.