RLG00000016793

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014553
Physical Location & Seq
Forward (+)
10029989 .. 10030969
981 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016793

Sequence Viewer

Length: 507 bp
ATGAAGCAAATTGAGCAGGAAAGTGGAAAGTGCTGTGTCGAGAGAAAACAAGTGAGTTCATCACCATCGCCACCGCCTCCGCCACCACCATTCCCAAGGTTCTTGGCTAATCAGAGTGTTGTTGAGAGTGTGACAAAGCGAGAAATCACCAGGTTCTGGACGCAGAAGCGCTTTAATGAGGAGGAGCACCTCCTCGCGGCGATCAAGGCTGCAGCACGCATTAGAGCCCGCAAACTCTCGGAGGAAGACTACAGATCTTTTGAGGAGTCCTTGAATGATGAAGAAAACGATGGCAAGGATAGTGACGGCGCAGTCAAAACGAATGAGAACAATGATGAAATTCGTGTTGGAATAAAGGACTGGTGGACAAAAAGCAAGTATGCATACTTGAACCAGCCAGATATTGATTCCAAGGAGCCTCCAAAAAGGCGCAGCTCCACATTTGTTCCTAATTGCTTTGCTTATAAGCCAACTCCTCTGTACCCAACCTCTCTTGGTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.31

Weight (kDa)

7.65

Isoelectric Point (pI)

68.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AasI GACNNNNNNGTC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 156
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 74, 80, 197, 229
AcsI RAATTY 1 cut(s) 339
AfaI GTAC 1 cut(s) 482
AfeI AGCGCT 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 156, 196
AgsI TTSAA 2 cut(s) 274, 391
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 435
AluI AGCT 1 cut(s) 435
Alw21I GWGCWC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 170
ApeKI GCWGC 3 cut(s) 209, 212, 432
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 3 cut(s) 171, 311, 432
AsuHPI GGTGA 2 cut(s) 54, 139
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 196, 224, 444
BccI CCATC 2 cut(s) 73, 284
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 151
BfmI CTRYAG 2 cut(s) 210, 250
BfoI RGCGCY 1 cut(s) 172
BglII AGATCT 1 cut(s) 254
BisI GCNGC 4 cut(s) 198, 210, 213, 433
BlsI GCNGC 4 cut(s) 199, 211, 214, 434
Bme1390I CCNGG 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 95, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 196
Bse1I ACTGG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 95, 411
BseLI CCNNNNNNNGG 2 cut(s) 156, 196
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 5 cut(s) 182, 194, 197, 278, 465
BseXI GCAGC 3 cut(s) 196, 224, 444
Bsh1236I CGCG 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 156, 196
Bsp1286I GDGCHC 2 cut(s) 189, 229
Bsp143I GATC 2 cut(s) 201, 254
BspACI CCGC 4 cut(s) 74, 80, 197, 229
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 417
BspMAI CTGCAG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 95, 411
BssMI GATC 2 cut(s) 201, 254
BssT1I CCWWGG 2 cut(s) 95, 411
Bst2UI CCWGG 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 217, 229
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 3 cut(s) 171, 311, 432
BstKTI GATC 2 cut(s) 204, 257
BstMBI GATC 2 cut(s) 201, 254
BstMWI GCNNNNNNNGC 2 cut(s) 13, 206
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 2 cut(s) 210, 250
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 196, 224, 444
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 217, 229
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 3 cut(s) 171, 311, 432
CseI GACGC 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 149
Csp6I GTAC 1 cut(s) 481
CviJI RGCY 7 cut(s) 107, 209, 227, 397, 418, 435, 469
CviKI_1 RGCY 7 cut(s) 107, 209, 227, 397, 418, 435, 469
CviQI GTAC 1 cut(s) 481
DpnI GATC 2 cut(s) 203, 256
DpnII GATC 2 cut(s) 201, 254
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 95, 411
Eco24I GRGCYC 1 cut(s) 229
Eco47III AGCGCT 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 95, 411
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 95, 411
FaiI YATR 3 cut(s) 381, 385, 465
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 4 cut(s) 198, 210, 213, 433
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 198, 210, 213, 433
GlaI GCGC 3 cut(s) 170, 310, 431
GluI GCNGC 4 cut(s) 198, 210, 213, 433
HaeII RGCGCY 1 cut(s) 172
HgaI GACGC 1 cut(s) 169
HhaI GCGC 3 cut(s) 171, 311, 432
Hin6I GCGC 3 cut(s) 169, 309, 430
HinP1I GCGC 3 cut(s) 169, 309, 430
HinfI GANTC 2 cut(s) 266, 407
HphI GGTGA 2 cut(s) 54, 139
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 2 cut(s) 114, 241
Hpy188III TCNNGA 2 cut(s) 40, 157
Hpy8I GTNNAC 1 cut(s) 366
HpyCH4V TGCA 2 cut(s) 212, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 206
HspAI GCGC 3 cut(s) 169, 309, 430
Kzo9I GATC 2 cut(s) 201, 254
LmnI GCTCC 3 cut(s) 184, 415, 440
LpnPI CCDG 7 cut(s) 2, 136, 142, 163, 346, 407, 411
Lsp1109I GCAGC 3 cut(s) 196, 224, 444
MabI ACCWGGT 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 130, 302
MalI GATC 2 cut(s) 203, 256
MboI GATC 2 cut(s) 201, 254
MboII GAAGA 2 cut(s) 257, 293
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 189, 229
MluCI AATT 3 cut(s) 9, 339, 451
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 328
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 2 cut(s) 174, 505
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 13, 206
NdeII GATC 2 cut(s) 201, 254
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 130, 302
NsiI ATGCAT 1 cut(s) 385
PfeI GAWTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 4 cut(s) 199, 211, 214, 434
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 417
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SaqAI TTAA 2 cut(s) 174, 505
SatI GCNGC 4 cut(s) 198, 210, 213, 433
Sau3AI GATC 2 cut(s) 201, 254
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 2 cut(s) 189, 229
SetI ASST 5 cut(s) 101, 155, 192, 437, 491
SexAI ACCWGGT 1 cut(s) 149
SfcI CTRYAG 2 cut(s) 210, 250
Sse9I AATT 3 cut(s) 9, 339, 451
SsiI CCGC 4 cut(s) 74, 80, 197, 229
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 2 cut(s) 95, 411
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 9, 339, 451
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 2 cut(s) 174, 505
Tru9I TTAA 2 cut(s) 174, 505
TseFI GTSAC 2 cut(s) 130, 302
TseI GCWGC 3 cut(s) 209, 212, 432
Tsp45I GTSAC 2 cut(s) 130, 302
TspDTI ATGAA 4 cut(s) 17, 48, 294, 351
Van91I CCANNNNNTGG 1 cut(s) 156
XapI RAATTY 1 cut(s) 339
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.