Rh2DG124300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014553
Physical Location & Seq
Forward (+)
10351761 .. 10353413
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG124300.1

Sequence Viewer

Length: 600 bp
ATGAAGATGAAGCAAATTGAGCAGGAGAGTGGAAAGTGCTGTGTCGAGAGAAAACAAGTGATTTCATCGCCACCGCCACCGCCTCCGCCACCACCATTCCCAAGGTTCTTGGCAAATCAGAGTGTTGTTGAGAGTGTGACAAGGCGAGAAATCGCCAGGTTCTGGACGCAGAAGCGCTTTAATGAGGAGGAGCACCTCCTCGCAGCGATCAAGGCTGCAGCACGCATTAGAGCCCGCAAACTCTCGGAGGAAGACTACAGATCTTTTGAGGAGTCCTTGAATGATGAAGACAACGATGGCAAAACGAATAGTGAGGGAGCAGTCAAAACGAATGAGAACAATGATGAAATTCGTGTTGGAATAAAGGACTGGTTAGTTATTTTATCAATCAATCAAAGAAAGAGAGCCAGGTCATACAGTTTCCTTAACAGTAAACTTCCAAATAACATGTGCAGGTGGACAAAAAGCAAGTATGCATACTTGAACCAGCCAGATATTGATTCCAAGGAGCCTCCAAAAAGGCGCAGCTCCACATTTGTTCCTAATTGCTTTGCTTATAAGCCAACTCCTCTGTACCCAACCTCTCTTGGTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

23.01

Weight (kDa)

9.45

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AarI CACCTGC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 4 cut(s) 74, 80, 86, 235
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 1 cut(s) 575
AfeI AGCGCT 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 2 cut(s) 280, 484
AjnI CCWGG 2 cut(s) 155, 407
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 1 cut(s) 528
AluI AGCT 1 cut(s) 528
Alw21I GWGCWC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 162
Aor51HI AGCGCT 1 cut(s) 176
ApeKI GCWGC 4 cut(s) 203, 215, 218, 525
ApoI RAATTY 1 cut(s) 348
AspLEI GCGC 2 cut(s) 177, 525
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 258, 294
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 202, 215, 230, 537
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 2 cut(s) 157, 409
BfmI CTRYAG 2 cut(s) 216, 256
BfoI RGCGCY 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 444
BglII AGATCT 1 cut(s) 260
BisI GCNGC 4 cut(s) 204, 216, 219, 526
BlsI GCNGC 4 cut(s) 205, 217, 220, 527
Bme1390I CCNGG 2 cut(s) 157, 409
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 157, 409
BpiI GAAGAC 2 cut(s) 258, 294
BsaJI CCNNGG 2 cut(s) 101, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 374
BseBI CCWGG 2 cut(s) 157, 409
BseDI CCNNGG 2 cut(s) 101, 504
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 5 cut(s) 188, 200, 203, 284, 558
BseXI GCAGC 4 cut(s) 202, 215, 230, 537
BsgI GTGCAG 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 195, 235
Bsp143I GATC 2 cut(s) 207, 260
BspACI CCGC 4 cut(s) 74, 80, 86, 235
BspLI GGNNCC 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 444
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 101, 504
BssMI GATC 2 cut(s) 207, 260
BssT1I CCWWGG 2 cut(s) 101, 504
Bst2UI CCWGG 2 cut(s) 157, 409
Bst4CI ACNGT 2 cut(s) 419, 431
BstC8I GCNNGC 2 cut(s) 223, 235
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 177, 525
BstKTI GATC 2 cut(s) 210, 263
BstMBI GATC 2 cut(s) 207, 260
BstMWI GCNNNNNNNGC 2 cut(s) 19, 212
BstNI CCWGG 2 cut(s) 157, 409
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 2 cut(s) 155, 407
BstSFI CTRYAG 2 cut(s) 216, 256
BstV1I GCAGC 4 cut(s) 202, 215, 230, 537
BstV2I GAAGAC 2 cut(s) 258, 294
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 51
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 223, 235
CaiI CAGNNNCTG 1 cut(s) 162
CfoI GCGC 2 cut(s) 177, 525
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 574
CviAII CATG 1 cut(s) 448
CviJI RGCY 7 cut(s) 215, 233, 407, 490, 511, 528, 562
CviKI_1 RGCY 7 cut(s) 215, 233, 407, 490, 511, 528, 562
CviQI GTAC 1 cut(s) 574
DpnI GATC 2 cut(s) 209, 262
DpnII GATC 2 cut(s) 207, 260
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 101, 504
Eco24I GRGCYC 1 cut(s) 235
Eco47III AGCGCT 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 155, 407
EcoT14I CCWWGG 2 cut(s) 101, 504
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 101, 504
FaeI CATG 1 cut(s) 451
FaiI YATR 5 cut(s) 415, 449, 474, 478, 558
FatI CATG 1 cut(s) 447
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 204, 216, 219, 526
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 204, 216, 219, 526
GlaI GCGC 2 cut(s) 176, 524
GluI GCNGC 4 cut(s) 204, 216, 219, 526
HaeII RGCGCY 1 cut(s) 178
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 177, 525
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 2 cut(s) 175, 523
HinP1I GCGC 2 cut(s) 175, 523
HinfI GANTC 2 cut(s) 272, 500
Hpy166II GTNNAC 2 cut(s) 434, 459
Hpy188I TCNGA 2 cut(s) 120, 247
Hpy188III TCNNGA 2 cut(s) 46, 163
Hpy8I GTNNAC 2 cut(s) 434, 459
HpyCH4III ACNGT 2 cut(s) 419, 431
HpyCH4V TGCA 3 cut(s) 218, 453, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 212
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 2 cut(s) 175, 523
Kzo9I GATC 2 cut(s) 207, 260
LmnI GCTCC 4 cut(s) 190, 317, 508, 533
Lsp1109I GCAGC 4 cut(s) 202, 215, 230, 537
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 209, 262
MboI GATC 2 cut(s) 207, 260
MboII GAAGA 3 cut(s) 16, 263, 299
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 195, 235
MluCI AATT 3 cut(s) 15, 348, 544
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 3 cut(s) 180, 426, 598
MspR9I CCNGG 2 cut(s) 157, 409
MvaI CCWGG 2 cut(s) 157, 409
MwoI GCNNNNNNNGC 2 cut(s) 19, 212
NdeII GATC 2 cut(s) 207, 260
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 1 cut(s) 451
PaqCI CACCTGC 1 cut(s) 444
PciI ACATGT 1 cut(s) 447
PfeI GAWTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 4 cut(s) 205, 217, 220, 527
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PscI ACATGT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 558
Psp6I CCWGG 2 cut(s) 155, 407
PspGI CCWGG 2 cut(s) 155, 407
PspN4I GGNNCC 1 cut(s) 510
PstI CTGCAG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SaqAI TTAA 3 cut(s) 180, 426, 598
SatI GCNGC 4 cut(s) 204, 216, 219, 526
Sau3AI GATC 2 cut(s) 207, 260
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 157, 409
SduI GDGCHC 2 cut(s) 195, 235
SetI ASST 7 cut(s) 107, 161, 198, 413, 458, 530, 584
SfcI CTRYAG 2 cut(s) 216, 256
Sse9I AATT 3 cut(s) 15, 348, 544
SsiI CCGC 4 cut(s) 74, 80, 86, 235
StyD4I CCNGG 2 cut(s) 155, 407
StyI CCWWGG 2 cut(s) 101, 504
TaaI ACNGT 2 cut(s) 419, 431
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 15, 348, 544
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 3 cut(s) 180, 426, 598
Tru9I TTAA 3 cut(s) 180, 426, 598
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 4 cut(s) 203, 215, 218, 525
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 17, 23, 54, 300, 360
Van91I CCANNNNNTGG 1 cut(s) 162
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 451
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.