RchiOBHm_Chr2g0098351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014553
Physical Location & Seq
Forward (+)
10760508 .. 10761871
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47315

Sequence Viewer

Length: 516 bp
ATGAAGATGAAGCAAATTGAGCAGGAGAGTGGAAAGTGCTGTGTCGAGAGAAAACAAGTGATTTCATCGCCACCGCCACCGCCTCCGCCACCACCATTCCCAAGGTTCTTGGCAAATCAGAGTGTTGTTGAGAGTGTGACAAGGCGAGAAATCGCCAGGTTCTGGACGCAGAAGCGCTTTAATGAGGAGGAGCACCTCCTCGCAGCGATCAAGGCTGCAGCACGCATTAGAGCCCGCAAACTCTCGGAGGAAGACTACAGATCTTTTGAGGAGTCCTTGAATGATGAAGACAACGATGGCAAAACGAATAGTGAGGGAGCAGTCAAAACGAATGAGAACAATGATGAAATTCGTGTTGGAATAAAGGACTGGTGGACAAAAAGCAAGTATGCATACTTGAACCAGCCAGATATTGATTCCAAGGAGCCTCCAAAAAGGCGCAGCTCCACATTTGTTCCTAATTGCTTTGCTTATAAGCCAACTCCTCTGTACCCAACCTCTCTTGGTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.71

Weight (kDa)

8.72

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 4 cut(s) 74, 80, 86, 235
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 1 cut(s) 491
AfeI AGCGCT 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 280, 400
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 1 cut(s) 444
AluI AGCT 1 cut(s) 444
Alw21I GWGCWC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 162
Aor51HI AGCGCT 1 cut(s) 176
ApeKI GCWGC 4 cut(s) 203, 215, 218, 441
ApoI RAATTY 1 cut(s) 348
AspLEI GCGC 2 cut(s) 177, 441
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 258, 294
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 202, 215, 230, 453
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 157
BfmI CTRYAG 2 cut(s) 216, 256
BfoI RGCGCY 1 cut(s) 178
BglII AGATCT 1 cut(s) 260
BisI GCNGC 4 cut(s) 204, 216, 219, 442
BlsI GCNGC 4 cut(s) 205, 217, 220, 443
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 157
BpiI GAAGAC 2 cut(s) 258, 294
BsaJI CCNNGG 2 cut(s) 101, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 101, 420
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 5 cut(s) 188, 200, 203, 284, 474
BseXI GCAGC 4 cut(s) 202, 215, 230, 453
BsiHKAI GWGCWC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 195, 235
Bsp143I GATC 2 cut(s) 207, 260
BspACI CCGC 4 cut(s) 74, 80, 86, 235
BspLI GGNNCC 1 cut(s) 426
BspMAI CTGCAG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 101, 420
BssMI GATC 2 cut(s) 207, 260
BssT1I CCWWGG 2 cut(s) 101, 420
Bst2UI CCWGG 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 223, 235
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 177, 441
BstKTI GATC 2 cut(s) 210, 263
BstMBI GATC 2 cut(s) 207, 260
BstMWI GCNNNNNNNGC 2 cut(s) 19, 212
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstSFI CTRYAG 2 cut(s) 216, 256
BstV1I GCAGC 4 cut(s) 202, 215, 230, 453
BstV2I GAAGAC 2 cut(s) 258, 294
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 223, 235
CaiI CAGNNNCTG 1 cut(s) 162
CfoI GCGC 2 cut(s) 177, 441
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 490
CviJI RGCY 6 cut(s) 215, 233, 406, 427, 444, 478
CviKI_1 RGCY 6 cut(s) 215, 233, 406, 427, 444, 478
CviQI GTAC 1 cut(s) 490
DpnI GATC 2 cut(s) 209, 262
DpnII GATC 2 cut(s) 207, 260
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 101, 420
Eco24I GRGCYC 1 cut(s) 235
Eco47III AGCGCT 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 101, 420
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 101, 420
FaiI YATR 3 cut(s) 390, 394, 474
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 204, 216, 219, 442
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 204, 216, 219, 442
GlaI GCGC 2 cut(s) 176, 440
GluI GCNGC 4 cut(s) 204, 216, 219, 442
HaeII RGCGCY 1 cut(s) 178
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 177, 441
Hin6I GCGC 2 cut(s) 175, 439
HinP1I GCGC 2 cut(s) 175, 439
HinfI GANTC 2 cut(s) 272, 416
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 120, 247
Hpy188III TCNNGA 2 cut(s) 46, 163
Hpy8I GTNNAC 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 218, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 212
HspAI GCGC 2 cut(s) 175, 439
Kzo9I GATC 2 cut(s) 207, 260
LmnI GCTCC 4 cut(s) 190, 317, 424, 449
LpnPI CCDG 7 cut(s) 8, 142, 148, 169, 355, 416, 420
Lsp1109I GCAGC 4 cut(s) 202, 215, 230, 453
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 209, 262
MboI GATC 2 cut(s) 207, 260
MboII GAAGA 3 cut(s) 16, 263, 299
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 195, 235
MluCI AATT 3 cut(s) 15, 348, 460
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 2 cut(s) 180, 514
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 19, 212
NdeII GATC 2 cut(s) 207, 260
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 394
PfeI GAWTC 1 cut(s) 416
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 4 cut(s) 205, 217, 220, 443
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PsiI TTATAA 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 426
PstI CTGCAG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SaqAI TTAA 2 cut(s) 180, 514
SatI GCNGC 4 cut(s) 204, 216, 219, 442
Sau3AI GATC 2 cut(s) 207, 260
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 2 cut(s) 195, 235
SetI ASST 5 cut(s) 107, 161, 198, 446, 500
SfcI CTRYAG 2 cut(s) 216, 256
Sse9I AATT 3 cut(s) 15, 348, 460
SsiI CCGC 4 cut(s) 74, 80, 86, 235
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 2 cut(s) 101, 420
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 15, 348, 460
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 2 cut(s) 180, 514
Tru9I TTAA 2 cut(s) 180, 514
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 4 cut(s) 203, 215, 218, 441
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 17, 23, 54, 300, 360
Van91I CCANNNNNTGG 1 cut(s) 162
XapI RAATTY 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.