Rmu_sc0003434.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003434.1
OG0014553
Physical Location & Seq
Reverse (-)
3022 .. 4000
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003434.1_g000001.1.cds

Sequence Viewer

Length: 519 bp
atgaagatgaagcaaattgagcaggagagtggaaagtgctgtgtcgagagaaaacaagtgatttcatcaccatcgccaccgccaccgcctccgccaccaccattcccaaggttcttggctaatcagagtgttgttgagagtgtgacaaggcgagaaatcgccaggttctggacgcagaagcgctttaatgaggaggagcacctcctcgcagcgatcaaggctgcagcacgcattagagcccgcaaactctcggaggaagactacagatcttttgaggagtccttgaatgatgaagacaacgatggcaaggatagtgacggcgcagtcaaaaccaatgagaacaatgatgaaattcgtgttggaataaaggactggtggacaaaaagcaagtatgcatacttgaaccagccagatattgattccaaggagcctccaaaaaggcgcagctccacatttgttcctaattgctttgcttataagccaactcctctgtacccaacctctcttggtgtcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.78

Weight (kDa)

8.38

Isoelectric Point (pI)

70.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AasI GACNNNNNNGTC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 168
AciI CCGC 4 cut(s) 80, 86, 92, 241
AcsI RAATTY 1 cut(s) 351
AfaI GTAC 1 cut(s) 494
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 286, 403
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 342, 374
AluBI AGCT 1 cut(s) 447
AluI AGCT 1 cut(s) 447
Alw21I GWGCWC 1 cut(s) 201
AlwNI CAGNNNCTG 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 182
ApeKI GCWGC 4 cut(s) 209, 221, 224, 444
ApoI RAATTY 1 cut(s) 351
AspLEI GCGC 3 cut(s) 183, 323, 444
AsuHPI GGTGA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 264, 300
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 4 cut(s) 208, 221, 236, 456
BccI CCATC 2 cut(s) 79, 296
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 163
BfmI CTRYAG 2 cut(s) 222, 262
BfoI RGCGCY 1 cut(s) 184
BglII AGATCT 1 cut(s) 266
BisI GCNGC 4 cut(s) 210, 222, 225, 445
BlsI GCNGC 4 cut(s) 211, 223, 226, 446
Bme1390I CCNGG 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 264, 300
BsaJI CCNNGG 2 cut(s) 107, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 107, 423
BseLI CCNNNNNNNGG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 5 cut(s) 194, 206, 209, 290, 477
BseXI GCAGC 4 cut(s) 208, 221, 236, 456
BsiHKAI GWGCWC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 201, 241
Bsp143I GATC 2 cut(s) 213, 266
BspACI CCGC 4 cut(s) 80, 86, 92, 241
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 107, 423
BssMI GATC 2 cut(s) 213, 266
BssT1I CCWWGG 2 cut(s) 107, 423
Bst2UI CCWGG 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 229, 241
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 3 cut(s) 183, 323, 444
BstKTI GATC 2 cut(s) 216, 269
BstMBI GATC 2 cut(s) 213, 266
BstMWI GCNNNNNNNGC 2 cut(s) 19, 218
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 2 cut(s) 222, 262
BstV1I GCAGC 4 cut(s) 208, 221, 236, 456
BstV2I GAAGAC 2 cut(s) 264, 300
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 229, 241
CaiI CAGNNNCTG 1 cut(s) 168
CfoI GCGC 3 cut(s) 183, 323, 444
CseI GACGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 493
CviJI RGCY 7 cut(s) 119, 221, 239, 409, 430, 447, 481
CviKI_1 RGCY 7 cut(s) 119, 221, 239, 409, 430, 447, 481
CviQI GTAC 1 cut(s) 493
DpnI GATC 2 cut(s) 215, 268
DpnII GATC 2 cut(s) 213, 266
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 107, 423
Eco24I GRGCYC 1 cut(s) 241
Eco47III AGCGCT 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 2 cut(s) 107, 423
EcoT22I ATGCAT 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 2 cut(s) 107, 423
FaiI YATR 3 cut(s) 393, 397, 477
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 210, 222, 225, 445
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 4 cut(s) 210, 222, 225, 445
GlaI GCGC 3 cut(s) 182, 322, 443
GluI GCNGC 4 cut(s) 210, 222, 225, 445
HaeII RGCGCY 1 cut(s) 184
HgaI GACGC 1 cut(s) 181
HhaI GCGC 3 cut(s) 183, 323, 444
Hin6I GCGC 3 cut(s) 181, 321, 442
HinP1I GCGC 3 cut(s) 181, 321, 442
HinfI GANTC 2 cut(s) 278, 419
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 2 cut(s) 126, 253
Hpy188III TCNNGA 2 cut(s) 46, 169
Hpy8I GTNNAC 1 cut(s) 378
HpyCH4V TGCA 2 cut(s) 224, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 218
HspAI GCGC 3 cut(s) 181, 321, 442
Kzo9I GATC 2 cut(s) 213, 266
LmnI GCTCC 3 cut(s) 196, 427, 452
LpnPI CCDG 7 cut(s) 8, 148, 154, 175, 358, 419, 423
Lsp1109I GCAGC 4 cut(s) 208, 221, 236, 456
MaeIII GTNAC 2 cut(s) 142, 314
MalI GATC 2 cut(s) 215, 268
MboI GATC 2 cut(s) 213, 266
MboII GAAGA 3 cut(s) 16, 269, 305
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 201, 241
MluCI AATT 3 cut(s) 15, 351, 463
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 340
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 2 cut(s) 186, 517
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 19, 218
NdeII GATC 2 cut(s) 213, 266
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 2 cut(s) 142, 314
NsiI ATGCAT 1 cut(s) 397
PfeI GAWTC 1 cut(s) 419
PflMI CCANNNNNTGG 1 cut(s) 168
PkrI GCNGC 4 cut(s) 211, 223, 226, 446
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 429
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 168
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 186, 517
SatI GCNGC 4 cut(s) 210, 222, 225, 445
Sau3AI GATC 2 cut(s) 213, 266
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 2 cut(s) 201, 241
SetI ASST 5 cut(s) 113, 167, 204, 449, 503
SfcI CTRYAG 2 cut(s) 222, 262
Sse9I AATT 3 cut(s) 15, 351, 463
SsiI CCGC 4 cut(s) 80, 86, 92, 241
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 2 cut(s) 107, 423
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 15, 351, 463
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 2 cut(s) 186, 517
Tru9I TTAA 2 cut(s) 186, 517
TseFI GTSAC 2 cut(s) 142, 314
TseI GCWGC 4 cut(s) 209, 221, 224, 444
Tsp45I GTSAC 2 cut(s) 142, 314
TspDTI ATGAA 5 cut(s) 17, 23, 54, 306, 363
Van91I CCANNNNNTGG 1 cut(s) 168
XapI RAATTY 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.