pycom02g09630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014553
Physical Location & Seq
Forward (+)
6665011 .. 6665780
770 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09630.2

Sequence Viewer

Length: 489 bp
ATGAAGATGAAGCAAATCGAGCAGGGGAATTCACCCTCGCCGCCACCTCCACCACCGCCACTTCCAAGGTTCTGGGATAAGAAGGCTGTTCCGGAGAGCGTGACAAAGCAAGAAATCGCGAGGTTCTGGTGTCAGAAGCGCATTAACGAAGAGGAGCATCTCCTTGCCGCTATCAAGGCCGCAGCATGTATTCGAGCCCTCAATCTCTCGGAGGAAGATTACAGACGTTTCGAGGAGTCCTTGAACAACGATGGTAAAGACGATAAGGACAGCTCTTCTGCTGCCAACGACAGTAACAAGAACGCGAGTGACAACGAAAATCGTGTTGGAATCAAGGACTGGTGGACGAAAAGCAAGTACGCATACTTGAACCAACCCGCCATAGAGTCCTCCGTGGATCCTCCGAAAAGGATGACTTCCACATTTGTTCCGAATTGTTTCGCTTACACGCCTGCGCGGCTCTACCCTACTTCTGTTGGTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

7.65

Isoelectric Point (pI)

70.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 119, 305, 457
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 6 cut(s) 41, 56, 168, 180, 378, 457
AclWI GGATC 2 cut(s) 392, 405
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 359
AgsI TTSAA 2 cut(s) 244, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
AlwI GGATC 2 cut(s) 392, 405
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 182, 281
ApoI RAATTY 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 2 cut(s) 141, 457
AsuHPI GGTGA 1 cut(s) 24
BamHI GGATCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 194, 268
BccI CCATC 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 457
BisI GCNGC 6 cut(s) 41, 168, 180, 183, 282, 458
BlsI GCNGC 6 cut(s) 42, 169, 181, 184, 283, 459
BmiI GGNNCC 1 cut(s) 399
BmsI GCATC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 65, 393
BsaWI WCCGGW 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 65, 393
BseGI GGATG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 2 cut(s) 167, 248
BseXI GCAGC 2 cut(s) 194, 268
Bsh1236I CGCG 3 cut(s) 119, 305, 457
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 1 cut(s) 397
Bsp68I TCGCGA 1 cut(s) 119
BspACI CCGC 6 cut(s) 41, 56, 168, 180, 378, 457
BspANI GGCC 1 cut(s) 179
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 3 cut(s) 119, 305, 457
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 2 cut(s) 392, 405
BspQI GCTCTTC 1 cut(s) 280
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 65, 393
BssMI GATC 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 144, 280
BstC8I GCNNGC 1 cut(s) 453
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 3 cut(s) 119, 305, 457
BstHHI GCGC 2 cut(s) 141, 457
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 3 cut(s) 19, 176, 457
BstNSI RCATGY 1 cut(s) 189
BstUI CGCG 3 cut(s) 119, 305, 457
BstV1I GCAGC 2 cut(s) 194, 268
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 417
BtuMI TCGCGA 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 453
CfoI GCGC 2 cut(s) 141, 457
Csp6I GTAC 1 cut(s) 358
CviAII CATG 1 cut(s) 186
CviJI RGCY 5 cut(s) 86, 179, 197, 273, 460
CviKI_1 RGCY 5 cut(s) 86, 179, 197, 273, 460
CviQI GTAC 1 cut(s) 358
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 144, 280
EarI CTCTTC 2 cut(s) 144, 280
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 1 cut(s) 189
FaiI YATR 3 cut(s) 187, 364, 383
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FatI CATG 1 cut(s) 185
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 6 cut(s) 41, 168, 180, 183, 282, 458
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 6 cut(s) 41, 168, 180, 183, 282, 458
GlaI GCGC 2 cut(s) 140, 456
GluI GCNGC 6 cut(s) 41, 168, 180, 183, 282, 458
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 92
HhaI GCGC 2 cut(s) 141, 457
Hin1II CATG 1 cut(s) 189
Hin6I GCGC 2 cut(s) 139, 455
HinP1I GCGC 2 cut(s) 139, 455
HinfI GANTC 3 cut(s) 236, 330, 386
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 4 cut(s) 135, 211, 405, 432
Hpy188III TCNNGA 2 cut(s) 92, 118
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 176, 457
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 189
HspAI GCGC 2 cut(s) 139, 455
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 397
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 6 cut(s) 8, 58, 105, 112, 325, 465
Lsp1109I GCAGC 2 cut(s) 194, 268
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 3 cut(s) 100, 293, 308
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 4 cut(s) 16, 161, 227, 267
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 2 cut(s) 28, 433
MlyI GAGTC 2 cut(s) 245, 395
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 9 cut(s) 46, 57, 114, 145, 205, 209, 226, 400, 411
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 144
MspI CCGG 1 cut(s) 92
MvnI CGCG 3 cut(s) 119, 305, 457
MwoI GCNNNNNNNGC 3 cut(s) 19, 176, 457
NdeII GATC 1 cut(s) 397
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 2 cut(s) 100, 308
NruI TCGCGA 1 cut(s) 119
NspI RCATGY 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 6 cut(s) 42, 169, 181, 184, 283, 459
PleI GAGTC 2 cut(s) 244, 394
PpsI GAGTC 2 cut(s) 244, 394
PspN4I GGNNCC 1 cut(s) 399
PsuI RGATCY 1 cut(s) 397
RruI TCGCGA 1 cut(s) 119
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 6 cut(s) 41, 168, 180, 183, 282, 458
Sau3AI GATC 1 cut(s) 397
SchI GAGTC 2 cut(s) 245, 395
SduI GDGCHC 1 cut(s) 199
SetI ASST 5 cut(s) 49, 71, 125, 229, 275
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 2 cut(s) 28, 433
SsiI CCGC 6 cut(s) 41, 56, 168, 180, 378, 457
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 18, 193, 231
TasI AATT 2 cut(s) 28, 433
TauI GCSGC 4 cut(s) 43, 170, 182, 460
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 2 cut(s) 100, 308
TseI GCWGC 2 cut(s) 182, 281
Tsp45I GTSAC 2 cut(s) 100, 308
TspDTI ATGAA 2 cut(s) 17, 23
TspGWI ACGGA 1 cut(s) 382
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.