Rh2CG124200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014553
Physical Location & Seq
Forward (+)
10952715 .. 10954400
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG124200.1

Sequence Viewer

Length: 597 bp
ATGAAGATGAAGCAAATTGAGCAGGAGAGAGGAAAGTGCTGTGTCGAGAGAAAACAAGTGATTTCATCACCACCGCCACCGCCTCCGCCACCACCATTCCCAAGGTTCTTGGCTAATCAGAGTGTTGTTGAGAGTGTGACAAGGCGAGAAATCGCCAGGTTCTGGACGCAGAAGCGCTTTAATGAGGAGGAGCACCTCCTCGCAGCGATCAAGGCTGCAGCACGCATTAGAGCCCGCAAACTCTCGGAGGAAGACTACAGATCTTTTGAGGAGTCCTTGAATGATGAAGACAACGATGGCAAGGATAATGACGGCGCAGTCAAAACGAATGAGAACAATGATGAAATTCGTGTTGGAATAAAGGACTGGTTAGTTATTTTCTCAATCAATCAAAGCAAGAGAGCCAGGTCATACAGTTTCCTTAACAGTAAACTTTCAAATAACATGTGCAGGTGGACAAAAAGCAAGTATGCATACTTGAACCAGCCAGATATTGATTCCAAGGAGCCTCCAACAAGGCGCAGCTCCACATTTGTTCCTAATTGCTTTGCTTATAAGCCAACTCCTCTGTACCCAACCTCTCTTGGTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.92

Weight (kDa)

9.26

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AarI CACCTGC 1 cut(s) 441
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 441
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 4 cut(s) 74, 80, 86, 235
AcsI RAATTY 1 cut(s) 345
AfaI GTAC 1 cut(s) 572
AfeI AGCGCT 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 3 cut(s) 280, 438, 481
AjnI CCWGG 2 cut(s) 155, 404
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 1 cut(s) 525
AluI AGCT 1 cut(s) 525
Alw21I GWGCWC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 162
Aor51HI AGCGCT 1 cut(s) 176
ApeKI GCWGC 4 cut(s) 203, 215, 218, 522
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 3 cut(s) 177, 317, 522
AsuHPI GGTGA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 258, 294
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 202, 215, 230, 534
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 2 cut(s) 157, 406
BfmI CTRYAG 2 cut(s) 216, 256
BfoI RGCGCY 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 441
BglII AGATCT 1 cut(s) 260
BisI GCNGC 4 cut(s) 204, 216, 219, 523
BlsI GCNGC 4 cut(s) 205, 217, 220, 524
Bme1390I CCNGG 2 cut(s) 157, 406
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 2 cut(s) 157, 406
BpiI GAAGAC 2 cut(s) 258, 294
BsaJI CCNNGG 2 cut(s) 101, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 371
BseBI CCWGG 2 cut(s) 157, 406
BseDI CCNNGG 2 cut(s) 101, 501
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 5 cut(s) 188, 200, 203, 284, 555
BseXI GCAGC 4 cut(s) 202, 215, 230, 534
BsgI GTGCAG 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 195, 235
Bsp143I GATC 2 cut(s) 207, 260
BspACI CCGC 4 cut(s) 74, 80, 86, 235
BspLI GGNNCC 1 cut(s) 507
BspMAI CTGCAG 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 441
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 101, 501
BssMI GATC 2 cut(s) 207, 260
BssT1I CCWWGG 2 cut(s) 101, 501
Bst2UI CCWGG 2 cut(s) 157, 406
Bst4CI ACNGT 2 cut(s) 416, 428
BstC8I GCNNGC 2 cut(s) 223, 235
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 3 cut(s) 177, 317, 522
BstKTI GATC 2 cut(s) 210, 263
BstMBI GATC 2 cut(s) 207, 260
BstMWI GCNNNNNNNGC 2 cut(s) 19, 212
BstNI CCWGG 2 cut(s) 157, 406
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 155, 404
BstSFI CTRYAG 2 cut(s) 216, 256
BstV1I GCAGC 4 cut(s) 202, 215, 230, 534
BstV2I GAAGAC 2 cut(s) 258, 294
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 223, 235
CaiI CAGNNNCTG 1 cut(s) 162
CfoI GCGC 3 cut(s) 177, 317, 522
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 571
CviAII CATG 1 cut(s) 445
CviJI RGCY 8 cut(s) 113, 215, 233, 404, 487, 508, 525, 559
CviKI_1 RGCY 8 cut(s) 113, 215, 233, 404, 487, 508, 525, 559
CviQI GTAC 1 cut(s) 571
DpnI GATC 2 cut(s) 209, 262
DpnII GATC 2 cut(s) 207, 260
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 101, 501
Eco24I GRGCYC 1 cut(s) 235
Eco47III AGCGCT 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 155, 404
EcoT14I CCWWGG 2 cut(s) 101, 501
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 101, 501
FaeI CATG 1 cut(s) 448
FaiI YATR 5 cut(s) 412, 446, 471, 475, 555
FatI CATG 1 cut(s) 444
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 204, 216, 219, 523
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 204, 216, 219, 523
GlaI GCGC 3 cut(s) 176, 316, 521
GluI GCNGC 4 cut(s) 204, 216, 219, 523
HaeII RGCGCY 1 cut(s) 178
HgaI GACGC 1 cut(s) 175
HhaI GCGC 3 cut(s) 177, 317, 522
Hin1II CATG 1 cut(s) 448
Hin6I GCGC 3 cut(s) 175, 315, 520
HinP1I GCGC 3 cut(s) 175, 315, 520
HinfI GANTC 2 cut(s) 272, 497
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 431, 456
Hpy188I TCNGA 2 cut(s) 120, 247
Hpy188III TCNNGA 2 cut(s) 46, 163
Hpy8I GTNNAC 2 cut(s) 431, 456
HpyCH4III ACNGT 2 cut(s) 416, 428
HpyCH4V TGCA 3 cut(s) 218, 450, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 212
Hsp92II CATG 1 cut(s) 448
HspAI GCGC 3 cut(s) 175, 315, 520
Kzo9I GATC 2 cut(s) 207, 260
LmnI GCTCC 3 cut(s) 190, 505, 530
Lsp1109I GCAGC 4 cut(s) 202, 215, 230, 534
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 209, 262
MboI GATC 2 cut(s) 207, 260
MboII GAAGA 3 cut(s) 16, 263, 299
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 195, 235
MluCI AATT 3 cut(s) 15, 345, 541
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 334, 536
Mph1103I ATGCAT 1 cut(s) 475
MseI TTAA 3 cut(s) 180, 423, 595
MspR9I CCNGG 2 cut(s) 157, 406
MvaI CCWGG 2 cut(s) 157, 406
MwoI GCNNNNNNNGC 2 cut(s) 19, 212
NdeII GATC 2 cut(s) 207, 260
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 448
PaqCI CACCTGC 1 cut(s) 441
PciI ACATGT 1 cut(s) 444
PfeI GAWTC 1 cut(s) 497
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 4 cut(s) 205, 217, 220, 524
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PscI ACATGT 1 cut(s) 444
PsiI TTATAA 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 155, 404
PspGI CCWGG 2 cut(s) 155, 404
PspN4I GGNNCC 1 cut(s) 507
PstI CTGCAG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SaqAI TTAA 3 cut(s) 180, 423, 595
SatI GCNGC 4 cut(s) 204, 216, 219, 523
Sau3AI GATC 2 cut(s) 207, 260
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 157, 406
SduI GDGCHC 2 cut(s) 195, 235
SetI ASST 7 cut(s) 107, 161, 198, 410, 455, 527, 581
SfcI CTRYAG 2 cut(s) 216, 256
Sse9I AATT 3 cut(s) 15, 345, 541
SsiI CCGC 4 cut(s) 74, 80, 86, 235
StyD4I CCNGG 2 cut(s) 155, 404
StyI CCWWGG 2 cut(s) 101, 501
TaaI ACNGT 2 cut(s) 416, 428
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 15, 345, 541
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 3 cut(s) 180, 423, 595
Tru9I TTAA 3 cut(s) 180, 423, 595
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 4 cut(s) 203, 215, 218, 522
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 17, 23, 54, 300, 357
Van91I CCANNNNNTGG 1 cut(s) 162
XapI RAATTY 1 cut(s) 345
XceI RCATGY 1 cut(s) 448
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.