Rorug02G0072400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014553
Physical Location & Seq
Reverse (-)
5691884 .. 5693856
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0072400.1

Sequence Viewer

Length: 441 bp
ATGTTGGGAGCTCCCGCCGTAACGACGCGTGTCGCCGCCGCATTCGCCGTCGCTGCCATCTTCCTCTCCTCCGTCGCCCTCTGCTCCAACAACAATTCCGAGGAGTTGTGCAGCAGAACCTGCGCAGCAGAGAACTGCAATTCGGTTGGGATTCGATACGGGAAGTACTGCGGAGTAGGGTGGACCGGCTGCCCAGGAGAGAAGCCATGTGATGACGTTGATGCTTGCTGCAAGATTCATGATGACTGTGTTGGCAATACAGGTATTAATGATGTAAAATGCCATGAGAAGTTCAAGAAATGCATAAAGAAAGTACAAAAATCTGGGAAGGTTGGATTTTCAAAGCAGTGCCCTTATGAAACAGTTGTGCCGACTATGGTGCAGGGTATGGATTTGGCCATCATGTTCAGCCAGTTTAGCAATTCAAAACTTGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.6

Weight (kDa)

7.92

Isoelectric Point (pI)

14.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 128
AccII CGCG 1 cut(s) 28
AciI CCGC 4 cut(s) 15, 36, 39, 171
AcoI YGGCCR 1 cut(s) 396
AfaI GTAC 2 cut(s) 167, 315
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 4 cut(s) 295, 342, 426, 434
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw21I GWGCWC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 5 cut(s) 53, 111, 125, 189, 228
AseI ATTAAT 1 cut(s) 267
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 183
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 353
BalI TGGCCA 1 cut(s) 398
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 5 cut(s) 40, 123, 137, 176, 215
BccI CCATC 2 cut(s) 65, 407
BceAI ACGGC 2 cut(s) 2, 32
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 7 cut(s) 36, 39, 54, 112, 126, 190, 229
BlsI GCNGC 7 cut(s) 37, 40, 55, 113, 127, 191, 230
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 211
BoxI GACNNNNGTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 99, 193
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 99, 193
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 2 cut(s) 58, 116
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 5 cut(s) 40, 123, 137, 176, 215
BsgI GTGCAG 2 cut(s) 130, 401
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 186
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 13, 353
BspACI CCGC 4 cut(s) 15, 36, 39, 171
BspANI GGCC 1 cut(s) 398
BspFNI CGCG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 99, 193
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 248, 364
BstAPI GCANNNNNTGC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 226
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 125
BstMWI GCNNNNNNNGC 4 cut(s) 44, 53, 120, 417
BstNI CCWGG 1 cut(s) 195
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 353
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 5 cut(s) 40, 123, 137, 176, 215
BsuRI GGCC 1 cut(s) 398
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 353
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 120
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 166, 314
CviAII CATG 4 cut(s) 207, 239, 284, 403
CviJI RGCY 5 cut(s) 11, 189, 205, 398, 411
CviKI_1 RGCY 5 cut(s) 11, 189, 205, 398, 411
CviQI GTAC 2 cut(s) 166, 314
EaeI YGGCCR 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 4 cut(s) 210, 242, 287, 406
FaiI YATR 9 cut(s) 208, 240, 285, 305, 357, 377, 389, 404, 439
FatI CATG 4 cut(s) 206, 238, 283, 402
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 7 cut(s) 36, 39, 54, 112, 126, 190, 229
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 7 cut(s) 36, 39, 54, 112, 126, 190, 229
FspI TGCGCA 1 cut(s) 124
GlaI GCGC 1 cut(s) 124
GluI GCNGC 7 cut(s) 36, 39, 54, 112, 126, 190, 229
HaeIII GGCC 1 cut(s) 398
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 125
Hin1II CATG 4 cut(s) 210, 242, 287, 406
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 151, 235
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 239, 295
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 3 cut(s) 28, 53, 77
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 2 cut(s) 248, 364
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 5 cut(s) 111, 138, 231, 303, 382
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 53, 120, 417
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 4 cut(s) 210, 242, 287, 406
HspAI GCGC 1 cut(s) 123
LmnI GCTCC 3 cut(s) 8, 16, 89
LpnPI CCDG 8 cut(s) 133, 180, 199, 207, 246, 309, 368, 425
Lsp1109I GCAGC 5 cut(s) 40, 123, 137, 176, 215
LweI GCATC 1 cut(s) 211
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 19
MboII GAAGA 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 13, 353
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 3 cut(s) 94, 139, 421
MluI ACGCGT 1 cut(s) 26
MluNI TGGCCA 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 111, 313
MnlI CCTC 4 cut(s) 74, 79, 89, 94
Mox20I TGGCCA 1 cut(s) 398
Mph1103I ATGCAT 1 cut(s) 305
MscI TGGCCA 1 cut(s) 398
MseI TTAA 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 398
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 4 cut(s) 44, 53, 120, 417
NlaIII CATG 4 cut(s) 210, 242, 287, 406
NsbI TGCGCA 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 305
PagI TCATGA 1 cut(s) 238
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 151, 235
PkrI GCNGC 7 cut(s) 37, 40, 55, 113, 127, 191, 230
PshAI GACNNNNGTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 120
RsaI GTAC 2 cut(s) 167, 315
RsaNI GTAC 2 cut(s) 166, 314
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 7 cut(s) 36, 39, 54, 112, 126, 190, 229
Sau96I GGNCC 1 cut(s) 183
ScaI AGTACT 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 2 cut(s) 13, 353
SetI ASST 5 cut(s) 13, 122, 219, 265, 333
SfaNI GCATC 1 cut(s) 211
SinI GGWCC 1 cut(s) 183
Sse9I AATT 3 cut(s) 94, 139, 421
SsiI CCGC 4 cut(s) 15, 36, 39, 171
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 248, 364
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 154
TasI AATT 3 cut(s) 94, 139, 421
TatI WGTACW 2 cut(s) 165, 313
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 2 cut(s) 151, 235
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 353
TseI GCWGC 5 cut(s) 53, 111, 125, 189, 228
TspDTI ATGAA 2 cut(s) 227, 372
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 183
VspI ATTAAT 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.