AT2G17800
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
7739787 .. 7742280
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17800.1

Sequence Viewer

Length: 594 bp
ATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGTGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACAAACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTACTGCTCAGGGAGAGGAACTGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTTCAAAAACACAAGAGAACGTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTCTTCAACCTCCAAAGCAGAAGAAAAAGAAAAGCAAAGCACAAAAAGCCTGCTCCATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008064 GO:0008150 GO:0009314 GO:0009416 GO:0009524 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010119 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0031974 GO:0031981 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032794 GO:0032870 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0033993 GO:0035639 GO:0036094 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071365 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090066 GO:0097159 GO:0097305 GO:0097306 GO:0097367 GO:0110053 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1901879 GO:1902903 GO:1903530
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

21.53

Weight (kDa)

9.2

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 2.5e-49 Ras family
Roc PF08477 8 - 121 7.1e-24 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 297
AccII CGCG 1 cut(s) 228
AciI CCGC 4 cut(s) 183, 226, 228, 459
AclWI GGATC 3 cut(s) 295, 308, 514
AcuI CTGAAG 2 cut(s) 332, 458
AfaI GTAC 2 cut(s) 108, 408
AfeI AGCGCT 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 2 cut(s) 480, 536
AjnI CCWGG 2 cut(s) 325, 397
AluBI AGCT 3 cut(s) 47, 310, 455
AluI AGCT 3 cut(s) 47, 310, 455
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 3 cut(s) 295, 308, 514
Aor51HI AGCGCT 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 515
AspLEI GCGC 3 cut(s) 8, 134, 404
AsuHPI GGTGA 1 cut(s) 22
BamHI GGATCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 527
BciT130I CCWGG 2 cut(s) 327, 399
BciVI GTATCC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 273, 359
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 2 cut(s) 9, 405
BfuI GTATCC 1 cut(s) 172
BglII AGATCT 1 cut(s) 361
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 2 cut(s) 327, 399
BmiI GGNNCC 3 cut(s) 154, 302, 352
BmrFI CCNGG 2 cut(s) 327, 399
BmsI GCATC 1 cut(s) 502
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu10I CCTNAGC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 226, 325, 397
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 327, 399
BseDI CCNNGG 3 cut(s) 226, 325, 397
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 457
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 3 cut(s) 300, 361, 519
BspACI CCGC 4 cut(s) 183, 226, 228, 459
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 154, 302, 352
BspPI GGATC 3 cut(s) 295, 308, 514
BssECI CCNNGG 3 cut(s) 226, 325, 397
BssMI GATC 3 cut(s) 300, 361, 519
Bst2UI CCWGG 2 cut(s) 327, 399
Bst4CI ACNGT 4 cut(s) 34, 115, 160, 381
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 2 cut(s) 247, 423
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 2 cut(s) 9, 405
BstHHI GCGC 3 cut(s) 8, 134, 404
BstKTI GATC 3 cut(s) 303, 364, 522
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 300, 361, 519
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 2 cut(s) 327, 399
BstSCI CCNGG 2 cut(s) 325, 397
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 527
BstX2I RGATCY 2 cut(s) 300, 361
BstYI RGATCY 2 cut(s) 300, 361
BsuI GTATCC 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 580
CfoI GCGC 3 cut(s) 8, 134, 404
Cfr42I CCGCGG 1 cut(s) 229
Csp6I GTAC 2 cut(s) 107, 407
CviJI RGCY 7 cut(s) 47, 155, 172, 272, 310, 455, 578
CviKI_1 RGCY 7 cut(s) 47, 155, 172, 272, 310, 455, 578
CviQI GTAC 2 cut(s) 107, 407
DdeI CTNAG 2 cut(s) 247, 423
DpnI GATC 3 cut(s) 302, 363, 521
DpnII GATC 3 cut(s) 300, 361, 519
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco47III AGCGCT 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 455
Eco57I CTGAAG 2 cut(s) 332, 458
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 325, 397
EcoT38I GRGCYC 1 cut(s) 457
FaiI YATR 8 cut(s) 20, 105, 175, 201, 279, 321, 338, 463
FaqI GGGAC 1 cut(s) 317
FauI CCCGC 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 2 cut(s) 273, 359
GlaI GCGC 3 cut(s) 7, 133, 403
GluI GCNGC 1 cut(s) 516
HaeII RGCGCY 2 cut(s) 9, 405
HhaI GCGC 3 cut(s) 8, 134, 404
Hin6I GCGC 3 cut(s) 6, 132, 402
HinP1I GCGC 3 cut(s) 6, 132, 402
HinfI GANTC 1 cut(s) 163
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 524
Hpy188III TCNNGA 1 cut(s) 368
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 4 cut(s) 34, 115, 160, 381
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 2 cut(s) 474, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 2 cut(s) 247, 423
HpySE526I ACGT 1 cut(s) 495
HspAI GCGC 3 cut(s) 6, 132, 402
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 3 cut(s) 300, 361, 519
LmnI GCTCC 5 cut(s) 44, 152, 452, 460, 587
Lsp1109I GCAGC 1 cut(s) 527
LweI GCATC 1 cut(s) 502
MaeI CTAG 2 cut(s) 273, 359
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 28, 221
MalI GATC 3 cut(s) 302, 363, 521
MboI GATC 3 cut(s) 300, 361, 519
MboII GAAGA 5 cut(s) 356, 376, 451, 524, 562
MflI RGATCY 2 cut(s) 300, 361
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 2 cut(s) 411, 447
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 6, 187, 424, 549
MseI TTAA 2 cut(s) 147, 209
MspA1I CMGCKG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 327, 399
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 2 cut(s) 327, 399
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 575
NdeII GATC 3 cut(s) 300, 361, 519
NlaIV GGNNCC 3 cut(s) 154, 302, 352
NmuCI GTSAC 1 cut(s) 28
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 1 cut(s) 517
PsiI TTATAA 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 325, 397
PspGI CCWGG 2 cut(s) 325, 397
PspN4I GGNNCC 3 cut(s) 154, 302, 352
PsuI RGATCY 2 cut(s) 300, 361
RsaI GTAC 2 cut(s) 108, 408
RsaNI GTAC 2 cut(s) 107, 407
SacI GAGCTC 1 cut(s) 457
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 2 cut(s) 147, 209
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 3 cut(s) 300, 361, 519
ScrFI CCNGG 2 cut(s) 327, 399
SduI GDGCHC 1 cut(s) 457
SetI ASST 8 cut(s) 17, 49, 62, 217, 312, 457, 498, 541
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 336
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
Sse9I AATT 2 cut(s) 411, 447
SsiI CCGC 4 cut(s) 183, 226, 228, 459
SspMI CTAG 2 cut(s) 273, 359
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 2 cut(s) 325, 397
TaaI ACNGT 4 cut(s) 34, 115, 160, 381
TaiI ACGT 1 cut(s) 498
TaqI TCGA 3 cut(s) 11, 120, 468
TasI AATT 2 cut(s) 411, 447
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 147, 209
Tru9I TTAA 2 cut(s) 147, 209
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 7, 232, 376
TspGWI ACGGA 2 cut(s) 57, 113
TspRI CASTG 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 297
XspI CTAG 2 cut(s) 273, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.