pycom15g00860
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0005576
Physical Location & Seq
Forward (+)
458397 .. 459931
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00860.6

Sequence Viewer

Length: 444 bp
ATGAGCGCCTCCAGGTTCATAAAGTGCGTGACGGTCGGCGACGGCGCCGTCGGCAAAACCTGCATGCTGATTTCCTACACCAGCAACACCTTTCCCACGGACTACGTACCGACTGTTTTCGACAATTTCAGTGCAAATGTTGTTGTGGATGGGAGCACTGTCAACCTAGCTCTGTGGGATACGGCTGGGCAGGAGGATTACAATAGATTAAGGCCCTTGAGCTATCGAGGGGCGGACGTCTTTATCCTTGCTTTCTCTCTCATAAGCAAAGCCAGCTACGAAAACGTTGCAAAAAAGTGGATTCCCGAACTGCGCCATTATGCACCTGGCGTTCCAATAATTCTGGTTGGAACAAAGCTTGATCTTCGGGATGATAAACAATTTTGTATAGACCATTCTGGTGCAGTTCCCATTACTGAAAGATCGATCAGGGAGAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008064 GO:0008150 GO:0009314 GO:0009416 GO:0009524 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010119 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0031974 GO:0031981 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032794 GO:0032870 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0033993 GO:0035639 GO:0036094 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071365 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090066 GO:0097159 GO:0097305 GO:0097306 GO:0097367 GO:0110053 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1901879 GO:1902903 GO:1903530
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

148

Amino Acids

16.31

Weight (kDa)

6.71

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AatII GACGTC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 1 cut(s) 233
AclI AACGTT 1 cut(s) 285
AcyI GRCGYC 2 cut(s) 45, 237
AfaI GTAC 1 cut(s) 108
AjnI CCWGG 2 cut(s) 11, 325
AluBI AGCT 4 cut(s) 170, 222, 276, 358
AluI AGCT 4 cut(s) 170, 222, 276, 358
Alw21I GWGCWC 1 cut(s) 158
AoxI GGCC 1 cut(s) 212
AspLEI GCGC 3 cut(s) 8, 47, 315
AspS9I GGNCC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 158
BccI CCATC 1 cut(s) 143
BceAI ACGGC 3 cut(s) 32, 58, 198
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 2 cut(s) 13, 327
BciVI GTATCC 1 cut(s) 172
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 2 cut(s) 9, 48
BfuAI ACCTGC 1 cut(s) 68
BfuI GTATCC 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 13, 327
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 13, 327
BpuEI CTTGAG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 106
BsaHI GRCGYC 2 cut(s) 45, 237
BsaJI CCNNGG 1 cut(s) 96
BseBI CCWGG 2 cut(s) 13, 327
BseCI ATCGAT 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 154, 376
BseYI CCCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 158
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 361, 422, 426
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 425
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 361, 422, 426
BssNI GRCGYC 2 cut(s) 45, 237
Bst2UI CCWGG 2 cut(s) 13, 327
Bst4CI ACNGT 3 cut(s) 34, 115, 160
BstACI GRCGYC 2 cut(s) 45, 237
BstAPI GCANNNNNTGC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 65, 274
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 154, 376
BstH2I RGCGCY 2 cut(s) 9, 48
BstHHI GCGC 3 cut(s) 8, 47, 315
BstKTI GATC 3 cut(s) 364, 425, 429
BstMBI GATC 3 cut(s) 361, 422, 426
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 51, 60, 273
BstNI CCWGG 2 cut(s) 13, 327
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 11, 325
BstSNI TACGTA 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 425
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 425
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 154, 376
BtsIMutI CAGTG 2 cut(s) 136, 156
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 65, 274
CfoI GCGC 3 cut(s) 8, 47, 315
Cfr13I GGNCC 1 cut(s) 213
ClaI ATCGAT 1 cut(s) 425
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 170, 185, 214, 222, 272, 276, 358
CviKI_1 RGCY 7 cut(s) 170, 185, 214, 222, 272, 276, 358
CviQI GTAC 1 cut(s) 107
DinI GGCGCC 1 cut(s) 46
DpnI GATC 3 cut(s) 363, 424, 428
DpnII GATC 3 cut(s) 361, 422, 426
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 248
Eco105I TACGTA 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 11, 325
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
FaeI CATG 1 cut(s) 67
FaiI YATR 5 cut(s) 20, 65, 263, 321, 389
FatI CATG 1 cut(s) 63
FokI GGATG 2 cut(s) 161, 383
FspBI CTAG 1 cut(s) 167
GlaI GCGC 3 cut(s) 7, 46, 314
GsaI CCCAGC 1 cut(s) 189
HaeII RGCGCY 2 cut(s) 9, 48
HaeIII GGCC 1 cut(s) 214
HhaI GCGC 3 cut(s) 8, 47, 315
Hin1I GRCGYC 2 cut(s) 45, 237
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 3 cut(s) 6, 45, 313
HinP1I GCGC 3 cut(s) 6, 45, 313
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 305, 368
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 44, 53
HpyCH4III ACNGT 3 cut(s) 34, 115, 160
HpyCH4IV ACGT 3 cut(s) 105, 237, 285
HpyCH4V TGCA 5 cut(s) 63, 134, 290, 323, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 60, 273
HpySE526I ACGT 3 cut(s) 105, 237, 285
Hsp92I GRCGYC 2 cut(s) 45, 237
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 3 cut(s) 6, 45, 313
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 361, 422, 426
LmnI GCTCC 1 cut(s) 153
MaeI CTAG 1 cut(s) 167
MaeII ACGT 3 cut(s) 105, 237, 285
MaeIII GTNAC 1 cut(s) 28
MalI GATC 3 cut(s) 363, 424, 428
MboI GATC 3 cut(s) 361, 422, 426
MboII GAAGA 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 4 cut(s) 124, 339, 380, 439
Mly113I GGCGCC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 19, 187, 221, 429
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 13, 327
MvaI CCWGG 2 cut(s) 13, 327
MwoI GCNNNNNNNGC 3 cut(s) 51, 60, 273
NarI GGCGCC 1 cut(s) 45
NdeII GATC 3 cut(s) 361, 422, 426
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 67
PaeI GCATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 106
Psp1406I AACGTT 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 11, 325
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 11, 325
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 213
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 209
Sau3AI GATC 3 cut(s) 361, 422, 426
Sau96I GGNCC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 13, 327
SduI GDGCHC 1 cut(s) 158
SfoI GGCGCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SnaBI TACGTA 1 cut(s) 106
SphI GCATGC 1 cut(s) 67
Sse9I AATT 4 cut(s) 124, 339, 380, 439
SsiI CCGC 1 cut(s) 233
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 11, 325
TaaI ACNGT 3 cut(s) 34, 115, 160
TaiI ACGT 3 cut(s) 108, 240, 288
TaqI TCGA 3 cut(s) 120, 226, 425
TasI AATT 4 cut(s) 124, 339, 380, 439
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 136, 163
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 136, 163
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XspI CTAG 1 cut(s) 167
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.