RchiOBHm_Chr6g0303291
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005576
Physical Location & Seq
Reverse (-)
63057981 .. 63060245
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27246

Sequence Viewer

Length: 594 bp
ATGAGTGCCTCCAGGTTCATAAAGTGCGTGACGGTCGGCGACGGCGCCGTCGGAAAAACCTGTATGCTGATTTCCTACACCAGCAACACCTTCCCTACGGACTATGTGCCCACTGTGTTCGATAATTTCAGCGCTAATGTTGTGGTGGATGGAAGCACAGTCAACCTTGCACTGTGGGACACTGCAGGGCAGGAGGATTACAATAGATTACGACCCCTGAGCTATCGAGGTGCCGATGTGTTCATACTTGCTTTCTCTCTGATTAGCAAAGCCAGCTATGAAAATGTAGCGAAAAAGTGGATTCCTGAGCTGCGGCATTATGCACCTGGTGTTCCAATTATTCTAGTTGGAACAAAGCTCGATCTTCGTGATGATGAACAATTCTTTATGGACAATGCTGCTGCTGTTCCCATCTCCAGTGCTCAGGGAGAGGAAATGAAGAAACTGATTGGAGCTCCTTCATATATAGAGTGTAGCTCAAAAACACAGCAGAATGTGAAGGCTGTTTTTGACGCAGCCATTAAGGTGGTGCTCCAGCCACCAAAGCAAAAGAAGAAAAAGAGAAGGGCACATAAGGCTTGCTCCATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008064 GO:0008150 GO:0009314 GO:0009416 GO:0009524 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010119 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0031974 GO:0031981 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032794 GO:0032870 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0033993 GO:0035639 GO:0036094 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071365 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090066 GO:0097159 GO:0097305 GO:0097306 GO:0097367 GO:0110053 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1901879 GO:1902903 GO:1903530
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

197

Amino Acids

21.69

Weight (kDa)

9.11

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 2.1e-49 Ras family
Roc PF08477 8 - 121 4.8e-24 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccB1I GGYRCC 2 cut(s) 44, 230
AciI CCGC 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 329
AfeI AGCGCT 1 cut(s) 133
AjnI CCWGG 2 cut(s) 11, 325
AluBI AGCT 6 cut(s) 222, 276, 310, 358, 455, 477
AluI AGCT 6 cut(s) 222, 276, 310, 358, 455, 477
Alw21I GWGCWC 3 cut(s) 424, 457, 534
Aor51HI AGCGCT 1 cut(s) 133
ApeKI GCWGC 4 cut(s) 310, 398, 401, 515
AspLEI GCGC 2 cut(s) 47, 134
BaeGI GKGCMC 2 cut(s) 111, 571
BanI GGYRCC 2 cut(s) 44, 230
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 3 cut(s) 424, 457, 534
BbvI GCAGC 4 cut(s) 297, 385, 388, 527
BccI CCATC 2 cut(s) 143, 419
BceAI ACGGC 2 cut(s) 32, 58
BciT130I CCWGG 2 cut(s) 13, 327
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 2 cut(s) 48, 135
BisI GCNGC 5 cut(s) 311, 314, 399, 402, 516
BlsI GCNGC 5 cut(s) 312, 315, 400, 403, 517
Bme1390I CCNGG 2 cut(s) 13, 327
BmiI GGNNCC 2 cut(s) 46, 232
BmrFI CCNGG 2 cut(s) 13, 327
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 2 cut(s) 400, 518
Bpu10I CCTNAGC 3 cut(s) 218, 306, 423
BsaHI GRCGYC 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 417
BseBI CCWGG 2 cut(s) 13, 327
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 209, 297, 437
BseNI ACTGG 1 cut(s) 417
BseSI GKGCMC 2 cut(s) 111, 571
BseXI GCAGC 4 cut(s) 297, 385, 388, 527
Bsh1285I CGRYCG 1 cut(s) 36
BshNI GGYRCC 2 cut(s) 44, 230
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 3 cut(s) 424, 457, 534
BslFI GGGAC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 191
Bsp1286I GDGCHC 5 cut(s) 111, 424, 457, 534, 571
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 1 cut(s) 313
BspCNI CTCAG 3 cut(s) 210, 298, 436
BspLI GGNNCC 2 cut(s) 46, 232
BspMAI CTGCAG 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 44, 230
BsrI ACTGG 1 cut(s) 417
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 13, 327
Bst4CI ACNGT 4 cut(s) 34, 115, 160, 174
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 274, 580
BstDEI CTNAG 3 cut(s) 218, 306, 423
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 2 cut(s) 48, 135
BstHHI GCGC 2 cut(s) 47, 134
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 273, 544, 575
BstNI CCWGG 2 cut(s) 13, 327
BstSCI CCNGG 2 cut(s) 11, 325
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 2 cut(s) 111, 571
BstV1I GCAGC 4 cut(s) 297, 385, 388, 527
BstXI CCANNNNNNTGG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 4 cut(s) 111, 170, 180, 424
Cac8I GCNNGC 2 cut(s) 274, 580
CfoI GCGC 2 cut(s) 47, 134
CseI GACGC 1 cut(s) 521
CsiI ACCWGGT 1 cut(s) 325
DdeI CTNAG 3 cut(s) 218, 306, 423
DinI GGCGCC 1 cut(s) 46
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
DraIII CACNNNGTG 1 cut(s) 329
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 455
Eco24I GRGCYC 1 cut(s) 457
Eco47III AGCGCT 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 11, 325
EcoT38I GRGCYC 1 cut(s) 457
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
FaqI GGGAC 1 cut(s) 191
Fnu4HI GCNGC 5 cut(s) 311, 314, 399, 402, 516
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 5 cut(s) 311, 314, 399, 402, 516
FspBI CTAG 1 cut(s) 344
GlaI GCGC 2 cut(s) 46, 133
GluI GCNGC 5 cut(s) 311, 314, 399, 402, 516
GsuI CTGGAG 2 cut(s) 400, 518
HaeII RGCGCY 2 cut(s) 48, 135
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 47, 134
Hin1I GRCGYC 1 cut(s) 45
Hin6I GCGC 2 cut(s) 45, 132
HinP1I GCGC 2 cut(s) 45, 132
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 53, 261
Hpy188III TCNNGA 2 cut(s) 305, 368
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 44, 53
HpyAV CCTTC 4 cut(s) 100, 468, 493, 558
HpyCH4III ACNGT 4 cut(s) 34, 115, 160, 174
HpyCH4V TGCA 3 cut(s) 170, 185, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 544, 575
HpyF3I CTNAG 3 cut(s) 218, 306, 423
Hsp92I GRCGYC 1 cut(s) 45
HspAI GCGC 2 cut(s) 45, 132
KasI GGCGCC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 4 cut(s) 452, 460, 537, 587
Lsp1109I GCAGC 4 cut(s) 297, 385, 388, 527
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 356, 451, 565
MhlI GDGCHC 5 cut(s) 111, 424, 457, 534, 571
MluCI AATT 3 cut(s) 124, 336, 380
Mly113I GGCGCC 1 cut(s) 45
MmeI TCCRAC 2 cut(s) 31, 328
MnlI CCTC 4 cut(s) 19, 187, 221, 424
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 524
MspR9I CCNGG 2 cut(s) 13, 327
MvaI CCWGG 2 cut(s) 13, 327
MwoI GCNNNNNNNGC 3 cut(s) 273, 544, 575
NarI GGCGCC 1 cut(s) 45
NdeII GATC 1 cut(s) 361
NlaIV GGNNCC 2 cut(s) 46, 232
NmuCI GTSAC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 5 cut(s) 312, 315, 400, 403, 517
PluTI GGCGCC 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 11, 325
PspGI CCWGG 2 cut(s) 11, 325
PspN4I GGNNCC 2 cut(s) 46, 232
PstI CTGCAG 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 524
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 5 cut(s) 311, 314, 399, 402, 516
Sau3AI GATC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 13, 327
SduI GDGCHC 5 cut(s) 111, 424, 457, 534, 571
SexAI ACCWGGT 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 3 cut(s) 124, 336, 380
SsiI CCGC 1 cut(s) 313
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 2 cut(s) 11, 325
TaaI ACNGT 4 cut(s) 34, 115, 160, 174
TaqI TCGA 3 cut(s) 120, 226, 360
TasI AATT 3 cut(s) 124, 336, 380
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 4 cut(s) 118, 177, 187, 424
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 4 cut(s) 310, 398, 401, 515
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 6 cut(s) 7, 232, 294, 390, 450, 452
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 4 cut(s) 118, 177, 187, 424
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.