AT4G35950
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005576
Physical Location & Seq
Reverse (-)
17023837 .. 17025866
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35950.1

Sequence Viewer

Length: 594 bp
ATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACGGATTATGTTCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACGGTGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCTGATGTTTTCATTCTTGCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCAAACTAGATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTGTCCCTATTACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATTGGAGCGCCAGCTTACATCGAGTGCAGTTCAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCGATCAGAGTGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAACAAAGCACAAAAGGCCTGCTCCATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000226 GO:0000902 GO:0000904 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008064 GO:0008150 GO:0009314 GO:0009416 GO:0009524 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010119 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0017157 GO:0019001 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0031974 GO:0031981 GO:0032271 GO:0032501 GO:0032502 GO:0032535 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032794 GO:0032870 GO:0032879 GO:0032956 GO:0032970 GO:0032989 GO:0033043 GO:0033993 GO:0035639 GO:0036094 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045177 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0060627 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071365 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090066 GO:0097159 GO:0097305 GO:0097306 GO:0097367 GO:0110053 GO:1901265 GO:1901363 GO:1901700 GO:1901701 GO:1901879 GO:1902903 GO:1903530
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

197

Amino Acids

21.57

Weight (kDa)

9.2

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 8 - 178 1.2e-48 Ras family
Roc PF08477 8 - 121 7.1e-24 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 3 cut(s) 313, 480, 536
AjnI CCWGG 2 cut(s) 325, 397
AluBI AGCT 4 cut(s) 47, 436, 445, 461
AluI AGCT 4 cut(s) 47, 436, 445, 461
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 1 cut(s) 515
AspLEI GCGC 2 cut(s) 8, 457
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 3 cut(s) 22, 50, 172
AvaII GGWCC 1 cut(s) 529
BbvI GCAGC 1 cut(s) 527
BccI CCATC 3 cut(s) 35, 402, 593
BciT130I CCWGG 2 cut(s) 327, 399
BciVI GTATCC 1 cut(s) 172
BfaI CTAG 2 cut(s) 273, 359
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 458
BfuI GTATCC 1 cut(s) 172
BglII AGATCT 1 cut(s) 361
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 2 cut(s) 327, 399
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 2 cut(s) 154, 352
BmrFI CCNGG 2 cut(s) 327, 399
BmsI GCATC 2 cut(s) 17, 502
BsaJI CCNNGG 3 cut(s) 96, 156, 226
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseBI CCWGG 2 cut(s) 327, 399
BseDI CCNNGG 3 cut(s) 96, 156, 226
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 1 cut(s) 578
BslFI GGGAC 2 cut(s) 317, 392
BslI CCNNNNNNNGG 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 317, 392
BsnI GGCC 1 cut(s) 578
Bsp143I GATC 2 cut(s) 361, 519
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 154, 352
BspMAI CTGCAG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 96, 156, 226
BssMI GATC 2 cut(s) 361, 519
Bst2UI CCWGG 2 cut(s) 327, 399
Bst4CI ACNGT 6 cut(s) 34, 115, 160, 227, 381, 421
BstC8I GCNNGC 2 cut(s) 459, 580
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 3 cut(s) 96, 156, 226
BstF5I GGATG 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 2 cut(s) 8, 457
BstKTI GATC 2 cut(s) 364, 522
BstMBI GATC 2 cut(s) 361, 519
BstMWI GCNNNNNNNGC 2 cut(s) 442, 575
BstNI CCWGG 2 cut(s) 327, 399
BstSCI CCNGG 2 cut(s) 325, 397
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 527
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 578
BtgI CCRYGG 3 cut(s) 96, 156, 226
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 459, 580
CfoI GCGC 2 cut(s) 8, 457
Cfr13I GGNCC 1 cut(s) 529
CseI GACGC 1 cut(s) 16
CviJI RGCY 7 cut(s) 47, 155, 272, 436, 445, 461, 578
CviKI_1 RGCY 7 cut(s) 47, 155, 272, 436, 445, 461, 578
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 363, 521
DpnII GATC 2 cut(s) 361, 519
Eco147I AGGCCT 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 325, 397
FaiI YATR 6 cut(s) 20, 78, 105, 201, 279, 321
FaqI GGGAC 2 cut(s) 317, 392
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 2 cut(s) 273, 359
GlaI GCGC 2 cut(s) 7, 456
GluI GCNGC 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 1 cut(s) 578
HgaI GACGC 1 cut(s) 16
HhaI GCGC 2 cut(s) 8, 457
Hin6I GCGC 2 cut(s) 6, 455
HinP1I GCGC 2 cut(s) 6, 455
HinfI GANTC 2 cut(s) 163, 301
HphI GGTGA 3 cut(s) 22, 50, 172
Hpy188I TCNGA 2 cut(s) 111, 524
Hpy188III TCNNGA 2 cut(s) 305, 368
HpyAV CCTTC 3 cut(s) 262, 493, 542
HpyCH4III ACNGT 6 cut(s) 34, 115, 160, 227, 381, 421
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 4 cut(s) 134, 185, 474, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 575
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 495
HspAI GCGC 2 cut(s) 6, 455
Kzo9I GATC 2 cut(s) 361, 519
LmnI GCTCC 6 cut(s) 44, 152, 328, 433, 452, 587
Lsp1109I GCAGC 1 cut(s) 527
LweI GCATC 2 cut(s) 17, 502
MaeI CTAG 2 cut(s) 273, 359
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 28, 221
MalI GATC 2 cut(s) 363, 521
MboI GATC 2 cut(s) 361, 519
MboII GAAGA 4 cut(s) 356, 451, 562, 571
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 361
MluCI AATT 2 cut(s) 336, 447
MmeI TCCRAC 2 cut(s) 134, 328
MnlI CCTC 3 cut(s) 187, 424, 549
MseI TTAA 2 cut(s) 147, 209
MslI CAYNNNNRTG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 327, 399
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 2 cut(s) 327, 399
MwoI GCNNNNNNNGC 2 cut(s) 442, 575
NdeII GATC 2 cut(s) 361, 519
NlaIV GGNNCC 2 cut(s) 154, 352
NmuCI GTSAC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PfeI GAWTC 2 cut(s) 163, 301
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 325, 397
PspGI CCWGG 2 cut(s) 325, 397
PspN4I GGNNCC 2 cut(s) 154, 352
PspPI GGNCC 1 cut(s) 529
PstI CTGCAG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 2 cut(s) 147, 209
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 2 cut(s) 361, 519
Sau96I GGNCC 1 cut(s) 529
ScrFI CCNGG 2 cut(s) 327, 399
SfaNI GCATC 2 cut(s) 17, 502
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 2 cut(s) 336, 447
SseBI AGGCCT 1 cut(s) 578
SspMI CTAG 2 cut(s) 273, 359
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 325, 397
TaaI ACNGT 6 cut(s) 34, 115, 160, 227, 381, 421
TaiI ACGT 1 cut(s) 498
TaqI TCGA 4 cut(s) 120, 367, 390, 468
TasI AATT 2 cut(s) 336, 447
TfiI GAWTC 2 cut(s) 163, 301
Tru1I TTAA 2 cut(s) 147, 209
Tru9I TTAA 2 cut(s) 147, 209
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 7, 232, 376
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 529
XspI CTAG 2 cut(s) 273, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.